Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g066780.3 Solanum lycopersicum HOM05M007334 ORTHO05M009308 1.2e-217 758.8 385 100.0
Potri.001G178100 Populus trichocarpa HOM05M007334 ORTHO05M009308 4.6e-97 358.2 369 52.6
Glyma.13G360800 Glycine max HOM05M007334 ORTHO05M009308 1.5e-92 343.2 377 50.7
GWHGAZTO085776 Oryza alta HOM05M007334 ORTHO05M009308 1.9e-90 336.3 375 50.7
AT1G80420 Arabidopsis thaliana HOM05M007334 ORTHO05M009308 2.7e-89 332.4 370 51.4
OsKitaake06g030800 Oryza sativa Kitaake HOM05M007334 ORTHO05M009308 1.0e-88 330.5 369 49.1
OsR498G0611613700.01 Oryza sativa ssp. indica HOM05M007334 ORTHO05M009308 1.0e-88 330.5 369 49.1
Os06g0144000 Oryza sativa ssp. japonica HOM05M007334 ORTHO05M009308 1.0e-88 330.5 369 49.1
GWHGAORA017417 Cenchrus purpureus HOM05M007334 ORTHO05M009308 5.1e-88 328.2 359 49.0
Sevir.4G031100 Setaria viridis HOM05M007334 ORTHO05M009308 5.1e-88 328.2 359 49.3
MBI04_g26647_MAGBIO Magnolia biondii HOM05M007334 ORTHO05M009308 6.6e-88 327.8 355 50.7
Seita.4G032300 Setaria italica HOM05M007334 ORTHO05M009308 3.3e-87 325.5 358 49.2
Pahal.4G329900 Panicum hallii HOM05M007334 ORTHO05M009308 4.3e-87 325.1 359 49.3
PH02Gene20256 Phyllostachys edulis HOM05M007334 ORTHO05M009308 4.3e-87 325.1 380 48.4
Bradi1g51220 Brachypodium distachyon HOM05M007334 ORTHO05M009308 5.6e-87 324.7 370 47.6
GWHGAORA053661 Cenchrus purpureus HOM05M007334 ORTHO05M009308 5.6e-87 324.7 360 49.4
GWHGAZTO036890 Oryza alta HOM05M007334 ORTHO05M009308 9.6e-87 323.9 369 48.5
OB06G12650 Oryza brachyantha HOM05M007334 ORTHO05M009308 1.4e-85 320.1 369 47.2
EJB05_46331 Eragrostis curvula HOM05M007334 ORTHO05M009308 9.0e-85 317.4 359 47.9
Sobic.010G033600 Sorghum bicolor HOM05M007334 ORTHO05M009308 1.2e-84 317.0 362 48.3
V3.Lp_chr7_0.1G798 Lolium perenne HOM05M007334 ORTHO05M009308 2.0e-84 316.2 370 48.1
Ot_Chr10_g24958 Oropetium thomaeum HOM05M007334 ORTHO05M009308 2.6e-84 315.8 371 48.5
Misin19G031700 Miscanthus sinensis HOM05M007334 ORTHO05M009308 7.6e-84 314.3 362 48.1
TraesCS7D03G0192200 Triticum aestivum HOM05M007334 ORTHO05M009308 9.9e-84 313.9 369 48.2
EJB05_57228 Eragrostis curvula HOM05M007334 ORTHO05M009308 1.7e-83 313.2 359 47.6
Horvu_MOREX_7H01G091300 Hordeum vulgare HOM05M007334 ORTHO05M009308 2.9e-83 312.4 371 48.0
Sspon.08G0015390-1A Saccharum spontaneum HOM05M007334 ORTHO05M009308 2.9e-83 312.4 362 47.8
evm.TU.AsparagusV1_06.958.V1.1 Asparagus officinalis HOM05M007334 ORTHO05M009308 1.4e-82 310.1 374 47.3
TraesCS7A03G0212000 Triticum aestivum HOM05M007334 ORTHO05M009308 5.4e-82 308.1 371 47.7
TraesCS4A03G0970100 Triticum aestivum HOM05M007334 ORTHO05M009308 7.1e-82 307.8 369 48.0
TRITD7Av1G025710 Triticum turgidum HOM05M007334 ORTHO05M009308 1.2e-81 307.0 371 47.7
Misin18G034700 Miscanthus sinensis HOM05M007334 ORTHO05M009308 3.5e-81 305.4 360 47.5
TRIDC7AG010060 Triticum dicoccoides HOM05M007334 ORTHO05M009308 3.5e-81 305.4 369 47.7
Dexi4B01G0003250 Digitaria exilis HOM05M007334 ORTHO05M009308 4.6e-81 305.1 324 48.5
DDU556G1088 Dioscorea dumetorum HOM05M007334 ORTHO05M009308 1.7e-80 303.1 376 46.5
GWHGASIY021984 Secale cereale HOM05M007334 ORTHO05M009308 2.3e-80 302.8 369 46.9
TRITD4Av1G234320 Triticum turgidum HOM05M007334 ORTHO05M009308 7.4e-79 297.7 392 45.7
Zm00007a00025563 Zea mays B104 HOM05M007334 ORTHO05M009308 2.1e-78 296.2 365 46.3
p5.00_sc00039_p0056 Elaeis guineensis HOM05M007334 ORTHO05M009308 6.2e-78 294.7 387 46.0
Sspon.08G0015390-2D Saccharum spontaneum HOM05M007334 ORTHO05M009308 6.2e-78 294.7 362 45.9
Zosma01g08440 Zostera marina HOM05M007334 ORTHO05M009308 2.4e-77 292.7 305 51.8
CALSI_Maker00010532 Calamus simplicifolius HOM05M007334 ORTHO05M009308 1.5e-76 290.0 369 46.6
Ma06_g19620 Musa acuminata HOM05M007334 ORTHO05M009308 9.9e-76 287.3 311 48.9
Spipo21G0011800 Spirodela polyrhiza HOM05M007334 ORTHO05M009308 8.4e-75 284.3 356 47.2
Aco000447 Ananas comosus HOM05M007334 ORTHO05M009308 1.9e-74 283.1 268 57.1
ATR0037G063 Amborella trichopoda HOM05M007334 ORTHO05M009308 2.1e-73 279.6 404 42.3
CDE02G4373 Ceratophyllum demersum HOM05M005444 ORTHO05M006906 1.0e-72 277.3 407 41.5
Asa0G01012 Allium sativum HOM05M007334 ORTHO05M009308 1.8e-72 276.6 366 45.4
Dexi4A01G0003030 Digitaria exilis HOM05M007334 ORTHO05M009308 7.6e-68 261.2 355 43.4
Zjn_sc00049.1.g00340.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M007334 ORTHO05M009308 1.1e-66 257.3 371 42.6
SEGI_14605 Sequoiadendron giganteum HOM05M007334 ORTHO05M009308 2.7e-65 252.7 331 42.0
AET7Gv20230300 Aegilops tauschii HOM05M007334 ORTHO05M009308 5.9e-60 235.0 258 50.8
HPP92_000676 Vanilla planifolia HOM05M007334 ORTHO05M009308 8.5e-59 231.1 270 47.0
Glyma.15G013100 Glycine max HOM05M007334 ORTHO05M009308 2.5e-55 219.5 240 51.2
Pp3c15_20480 Physcomitrium patens HOM05M007334 ORTHO05M009308 1.3e-51 207.2 311 36.7
TRIDC4AG058520 Triticum dicoccoides HOM05M007334 ORTHO05M009308 6.5e-51 204.9 173 56.6
Mapoly0044s0047 Marchantia polymorpha HOM05M007334 ORTHO05M009308 1.8e-45 186.8 373 35.1
SEGI_13111 Sequoiadendron giganteum HOM05M007334 ORTHO05M009308 2.2e-35 153.3 198 44.9
Zm00001eb377280 Zea mays B73 HOM05M007334 ORTHO05M009308 2.6e-31 139.8 190 41.1
CBR_g23739 Chara braunii HOM05M007334 ORTHO05M009308 7.7e-28 128.3 142 43.0
Pp3c21_18730 Physcomitrium patens HOM05M007334 ORTHO05M009308 6.6e-11 72.0 102 36.3
AET3Gv20886700 Aegilops tauschii HOM05M007334 ORTHO05M009308 3.7e-06 56.2 42 52.4


User provided reference genes

Program Settings