Gene: Solyc06g066780.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc06g066780.3
  • Transcript Identifier Solyc06g066780.3.1
  • Gene Type Coding gene
  • Location SL4.0ch06 : 39595482-39600201 : positive

Gene Family Information

Gene Duplication Information

Labels

Identifiers

  • tid Solyc06g066780.3.1

Descriptions

  • Description DNA repair protein XRCC1 (AHRD V3.3 *** A0A2G2VAW6_CAPBA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000012
IEA
InterProsingle strand break repair
GO:0006284
IEA
InterProbase-excision repair
GO:0006303
IEA
InterProdouble-strand break repair via nonhomologous end joining
GO:1901969
ISO
PLAZA Integrative Orthologypositive regulation of polynucleotide 3'-phosphatase activity AT1G80420
GO:0080111
ISO
PLAZA Integrative OrthologyDNA demethylation AT1G80420
GO:0006266
ISO
PLAZA Integrative OrthologyDNA ligation AT1G80420
GO:1901972
ISO
PLAZA Integrative Orthologypositive regulation of DNA-5-methylcytosine glycosylase activity AT1G80420

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003684
IEA
InterProdamaged DNA binding
GO:0010385
ISO
PLAZA Integrative Orthologydouble-stranded methylated DNA binding AT1G80420
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G80420

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036420 BRCT domain superfamily
IPR001357 BRCT domain
IPR045080 XRCC1, first (central) BRCT domain
Mapman id Description
14.5.7 DNA damage response.base excision repair (BER).DNA repair protein (XRCC1)