Anchorpoints

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicumAa31LG5G2100LG-5-View
Aethionema arabicumAa31LG11G9470LG-11+View
Acer truncatumAtru.chr5.1170chr5-View
Actinidia chinensisActinidia24339Lachesis_group24+View
Actinidia chinensisActinidia32227Lachesis_group19+View
Actinidia chinensisActinidia24830Lachesis_group15+View
Arabidopsis lyrataAL6G39230scaffold_6-View
Arabidopsis lyrataAL6G50600scaffold_6+View
Avicennia marinaMSTRG.18164ScioBoG_22153_HRSCAF_22259-View
Avicennia marinaMSTRG.21624ScioBoG_26769_HRSCAF_26899+View
Aquilegia oxysepalaAqoxy2G02974CHR02-View
Aquilegia oxysepalaAqoxy5G00738CHR05+View
Arachis hypogaeaarahy.Tifrunner.gnm1.ann1.9JI5AAPTHR10073:SF12 - MISMATCH REPAIR ENDONUCLEASE PMS2arahy.Tifrunner.gnm1.Arahy.02+View
Arabidopsis thalianaAT4G02460DNA mismatch repair protein Encodes a protein similar to PMS1 in yeast%2C a member of the family of eukaryotic MutL homologs. The protein appears to play a role in DNA mismatch repair and in the suppression of somatic homeologous recombination. POSTMEIOTIC SEGREGATION 1 (PMS1)%3B FUNCTIONS IN: mismatched DNA binding%2C ATP binding%3B INVOLVED IN: mismatch repair%2C fruit development%2C seed development%2C DNA recombination%2C pollen development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA mismatch repair%2C conserved site (InterPro:IPR014762)%2C ATPase-like%2C ATP-binding domain (InterPro:IPR003594)%2C DNA mismatch repair protein%2C C-terminal (InterPro:IPR013507)%2C MutL%2C C-terminal%2C dimerisation (InterPro:IPR014790)%2C DNA mismatch repair protein%2C N-terminal (InterPro:IPR014763)%2C Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568)%2C DNA mismatch repair protein (InterPro:IPR002099)%2C Post Meiotic Segregation 2 (InterPro:IPR015434)%2C Ribosomal protein S5 domain 2-type fold%2C subgroup (InterPro:IPR014721)%3B BEST Arabidopsis thaliana protein match is: MUTL-homologue 1 (TAIR:AT4G09140.1)%3B Has 10471 Blast hits to 7086 proteins in 2377 species: Archae - 138%3B Bacteria - 7516%3B Metazoa - 568%3B Fungi - 666%3B Plants - 148%3B Viruses - 0%3B Other Eukaryotes - 1435 (source: NCBI BLink).Chr4-View
Brassica napusA09p05420A09+View
Brassica rapaBraA02t07461ZA02-View
Brassica rapaBraA09t36180ZA09+View
Camellia sinensis var. sinensisCSS0020039RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4; AltName: Full=Glycine-rich protein 10; Short=GRP 10 [Nicotiana tabacum]Chr13+View
Camellia sinensis var. sinensisCSS0027670PREDICTED: DNA mismatch repair protein PMS1 isoform X2 [Vitis vinifera]Chr11-View
Camellia sinensis var. sinensisCSS0029265PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Vitis vinifera]Chr6+View
Capsicum annuumCAN.G339.22PGAv.1.6.scaffold339-View
Cannabis sativaCANSAT25G0223NC_044370.1+View
Cicer arietinum L.Ca_09150_v3Ca_LG3_v3+View
Cicer arietinum L.Ca_10348_v3Ca_LG4_v3-View
Corylus avellanaHaze_04909Similar to PMS1: DNA mismatch repair protein PMS1 (Arabidopsis thaliana OX%3D3702)2+View
Coffea canephoraCc01_g20720DNA mismatch repair protein, putativechr1+View
Citrus clementinaCiclev10018899m.gscaffold_3+View
Carpinus fangianaCfa005938Cfa02-View
Cardamine hirsutaCARHR250730MutL DNA mismatch repair proteinChr8-View
Carya illinoinensisCiPaw.07G107000K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4)Chr07+View
Carya illinoinensisCiPaw.08G096800K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4)Chr08-View
Citrullus lanatusClCG09G005970MutL DNA mismatch repair proteinCG_Chr09-View
Cucumis meloMELO3C016013.2DNA mismatch repair protein PMS1chr01-View
Corchorus olitoriusCOL.COLO4_23366hypothetical proteinAWUE01018187.1-View
Carica papayaCpa.g.sc9.220supercontig_9+View
Chenopodium quinoaAUR62008655Probable U6 snRNA-associated Sm-like protein LSm4C_Quinoa_Scaffold_1710+View
Capsella rubellaCarub.0006s2485K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4)scaffold_6-View
Capsella rubellaCarub.0006s3467K10858 - DNA mismatch repair protein PMS2 (PMS2)scaffold_6+View
Cucumis sativus L.CsaV3_7G029150DNA mismatch repair protein PMS1chr7+View
Davidia involucrataDinv19707GWHABJS00000007-View
Davidia involucrataDinv33041GWHABJS00000010+View
Davidia involucrataDinv40337GWHABJS00000005+View
Durio zibethinusDuzib138G0111NW_019167893.1-View
Durio zibethinusDuzib211G0610NW_019168049.1-View
Durio zibethinusDuzib133G1030NW_019167938.1-View
Erigeron canadensisECA248G0237Conyza_canadensis_scaffold:9+View
Eucalyptus grandisEucgr.K03466Chr11+View
Erythranthe guttataMigut.D00202scaffold_4+View
Erythranthe guttataMigut.D00124scaffold_4+View
Eutrema salsugineumThhalv10021732m.gK12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4)scaffold_13-View
Eutrema salsugineumThhalv10028404m.gK10858 - DNA mismatch repair protein PMS2 (PMS2)scaffold_3-View
Fragaria x ananassaFAN20G0797K10858 - DNA mismatch repair protein PMS2 (PMS2)Fvb2-3-View
Fragaria x ananassaFAN27G3300K10858 - DNA mismatch repair protein PMS2 (PMS2)Fvb2-1+View
Fragaria x ananassaFAN15G0019PTHR10073//PTHR10073:SF12 - DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL // MISMATCH REPAIR ENDONUCLEASE PMS2Fvb2-4+View
Fragaria x ananassaFAN24G1953PTHR23338//PTHR23338:SF24 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM // SUBFAMILY NOT NAMEDFvb2-2-View
Fragaria vescaFvH4_2g25510K10858 - DNA mismatch repair protein PMS2 (PMS2)Fvb2+View
Gossypium hirsutumGohir.D12G135200K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4)D12-View
Gossypium hirsutumGohir.D08G052400KOG3428//KOG3448//KOG3482 - Small nuclear ribonucleoprotein SMD1 and related snRNPs // Predicted snRNP core protein // Small nuclear ribonucleoprotein (snRNP) SMFD08-View
Gossypium hirsutumGohir.A08G042600K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4)A08-View
Gossypium hirsutumGohir.A12G131300K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4)A12-View
Glycine maxGlyma.02G155200K10858 - DNA mismatch repair protein PMS2 (PMS2)Gm02+View
Glycine maxGlyma.10G019100K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4)Gm10-View
Glycine maxGlyma.19G210402K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4)Gm19+View
Glycine maxGlyma.03G213600K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4)Gm03+View
Gossypium raimondiiGorai.008G146200Chr08-View
Gossypium raimondiiGorai.004G052500Chr04-View
Lupinus albusLalb_Chr06g0163421K10858 - DNA mismatch repair protein PMS2 (PMS2)Lalb_Chr06+View
Lupinus albusLalb_Chr02g0143231K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4)Lalb_Chr02+View
Lotus japonicusLj5g0020775K10858 - DNA mismatch repair protein PMS2 (PMS2)chr5+View
Lotus japonicusLj1g0003572K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4)chr1+View
Lonicera japonicaLj2C1191T9GWHAAZE00000002+View
Lactuca sativaLsat_1_v5_gn_8_19721Lsat_1_v8_lg_8-View
Lactuca sativaLsat_1_v5_gn_5_190620Lsat_1_v8_lg_5-View
Magnolia biondiiMBI18_g08110_MAGBIOAED:0.15Chr18-View
Malus domesticaMD11G1305800DNA mismatch repair proteinChr11+View
Malus domesticaMD03G1286000Small nuclear ribonucleoprotein family proteinChr03+View
Manihot esculentaManes.09G170401Chromosome09+View
Manihot esculentaManes.05G063400Chromosome05-View
Manihot esculentaManes.01G217500Chromosome01+View
Medicago truncatulaMedtr7g108700u6 snRNA-associated-like-Smproteinchr7+View
Medicago truncatulaMedtr1g088710u6 snRNA-associated-like-Smproteinchr1-View
Nelumbo nuciferaNn3g21455chr3+View
Olea europaeaOeu011450.1scaffold1435+View
Olea europaeaOeu054129.1chr20+View
Olea europaeaOeu048345.1chr1-View
Petunia axillarisPeaxi162Scf00001ggene001DNA mismatch repair protein, putativePeaxi162Scf00001-View
Punica granatumPGR044G1196NC_045134.1+View
Prunus persicaPrupe.8G259200Pp08+View
Papaver somniferumPSO170G1601NC_039360.1-View
Populus trichocarpaPotri.014G130700K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4)Chr14-View
Populus trichocarpaPotri.002G205700K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4)Chr02-View
Phaseolus vulgarisPhvul.001G206200K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4)Chr01+View
Quercus lobataQL03p0201773-View
Quercus lobataQL12p02726712+View
Rosa chinensisRcHm_v2.0_Chr6g0293721RcHm_v2.0_Chr6+View
Rhododendron simsiiRhsim13G0011500chr13-View
Rhododendron simsiiRhsim01G0284100chr01+View
Salvia bowleyanaSalBow3G3296GWHASIU00000006+View
Salix brachistaSabra02G0153600GWHAAZH00000002+View
Salix brachistaSabra14G0097300GWHAAZH00000014-View
Simmondsia chinensisSc05g0004040GWHAASQ00000005-View
Sechium eduleSed0008302LG07-View
Solanum lycopersicumSolyc09g074990.4DNA mismatch repair protein PMS1 (AHRD V3.3 *** A0A1U8FBY8_CAPAN)SL4.0ch09+View
Solanum lycopersicumSolyc01g099740.4U6 snRNA-associated Sm-like protein LSm4 (AHRD V3.3 *-* A0A328E599_9ASTE)SL4.0ch01+View
Schrenkiella parvulaSp2g20890K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4)ch2-4+View
Schrenkiella parvulaSp3g04360K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4)ch3-1+View
Schrenkiella parvulaSp6g02370K10858 - DNA mismatch repair protein PMS2 (PMS2)ch6-1-View
Solanum pennelliiSopen01g043260Probable U6 snRNA-associated Sm-like protein LSm4 (Glycine-rich protein 10) (GRP 10) - Nicotiana tabacum (Common tobacco), embryo defective 1644 (emb1644) | CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain , Like-Sm ribonucleoprotein (LSM)-related domain , Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type | BEST Arabidopsis thaliana protein match is: snRNP core protein SMD3Spenn-ch01+View
Solanum pennelliiSopen09g029810Encodes a protein similar to PMS1 in yeast, a member of the family of eukaryotic MutL homologs. The protein appears to play a role in DNA mismatch repair and in the suppression of somatic homeologous recombination. | POSTMEIOTIC SEGREGATION 1 (PMS1) | FUNCTIONS IN: mismatched DNA binding, ATP binding | INVOLVED IN: mismatch repair, fruit development, seed development, DNA recombination, pollen development | LOCATED IN: nucleus | EXPRESSED IN: 17 plant structures | EXPRESSED DURING: 9 growth stages | CONTAINS InterPro DOMAIN/s: DNA mismatch repair, conserved site , ATPase-like, ATP-binding domain , DNA mismatch repair protein, C-terminal , MutL, C-terminal, dimerisation , DNA mismatch repair protein, N-terminal , Ribosomal protein S5 domain 2-type fold , DNA mismatch repair protein , Post Meiotic Segregation 2 , Ribosomal protein S5 domain 2-type fold, subgroup | BEST Arabidopsis thaliana protein match is: MUTL-homologue 1Spenn-ch09+View
Selenicereus undatusHund05415Scaffold_19641+View
Trochodendron aralioidesTAR362G0065group17-View
Trochodendron aralioidesTAR365G1115group16+View
Theobroma cacaoThecc.01G298000DNA mismatch repair proteinChromosome_1+View
Tarenaya hasslerianaTHA.LOC104801271DNA mismatch repair protein PMS1NW_010969548.1+View
Trifolium pratenseTPR.G34004Tp57577_TGAC_v2_LG1-View
Trifolium pratenseTPR.G9614Tp57577_TGAC_v2_LG6-View
Tripterygium wilfordiiTWI14G0261NC_052249.1+View
Tripterygium wilfordiiTWI59G0539NC_052248.1-View
Utricularia gibbaunitig_0.g657unitig_0+View
Vaccinium macrocarponvmacro02462Similar to PMS1: DNA mismatch repair protein PMS1 (Arabidopsis thaliana OX%3D3702)chr9_Vaccinium_macrocarpon_Stevens_v1-View
Vaccinium macrocarponvmacro14997Similar to Probable U6 snRNA-associated Sm-like protein LSm4 (Nicotiana tabacum OX%3D4097)chr7_Vaccinium_macrocarpon_Stevens_v1+View
Vigna mungoVMungo0720G1966CM024071.1-View
Vitis viniferaGSVIVG01027985001chr7+View