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Dicots PLAZA 5.0
Data
Overview
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Analyze
Gene families
Expansion plot
Gene family finder
Synteny plot
Colinearity
Ks-graphs
WGDotplot
Colinear region finder
Localization
Functional clusters
WGMapping
Pan-Genome
Pan and core families
Synteny scores overview
Synteny score chart
HOT-Region
Other
Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/Interpro description
Gene family
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BLAST page
Program
blastn
blastp
blastx
tblastx
tblastn
Database
PLAZA Protein Sequences
PLAZA Transcript Sequences
Acer truncatum Genome Sequence
Actinidia chinensis Genome Sequence
Aethionema arabicum Genome Sequence
Amaranthus hybridus Genome Sequence
Amborella trichopoda Genome Sequence
Anthoceros agrestis Genome Sequence
Aquilegia oxysepala Genome Sequence
Arabidopsis lyrata Genome Sequence
Arabidopsis thaliana Genome Sequence
Arachis hypogaea Genome Sequence
Avicennia marina Genome Sequence
Beta vulgaris Genome Sequence
Brassica carinata Genome Sequence
Brassica napus Genome Sequence
Brassica oleracea Genome Sequence
Brassica rapa Genome Sequence
Camellia sinensis var. sinensis Genome Sequence
Cannabis sativa Genome Sequence
Capsella rubella Genome Sequence
Capsicum annuum Genome Sequence
Cardamine hirsuta Genome Sequence
Carica papaya Genome Sequence
Carpinus fangiana Genome Sequence
Carya illinoinensis Genome Sequence
Ceratophyllum demersum Genome Sequence
Chara braunii Genome Sequence
Chenopodium quinoa Genome Sequence
Chlamydomonas reinhardtii Genome Sequence
Cicer arietinum L. Genome Sequence
Citrullus lanatus Genome Sequence
Citrus clementina Genome Sequence
Coffea canephora Genome Sequence
Corchorus olitorius Genome Sequence
Corylus avellana Genome Sequence
Cucumis melo Genome Sequence
Cucumis sativus L. Genome Sequence
Daucus carota Genome Sequence
Davidia involucrata Genome Sequence
Durio zibethinus Genome Sequence
Erigeron canadensis Genome Sequence
Erythranthe guttata Genome Sequence
Eucalyptus grandis Genome Sequence
Eutrema salsugineum Genome Sequence
Fragaria vesca Genome Sequence
Fragaria x ananassa Genome Sequence
Glycine max Genome Sequence
Gossypium hirsutum Genome Sequence
Gossypium raimondii Genome Sequence
Helianthus annuus Genome Sequence
Hydrangea macrophylla Genome Sequence
Lactuca sativa Genome Sequence
Lonicera japonica Genome Sequence
Lotus japonicus Genome Sequence
Lupinus albus Genome Sequence
Magnolia biondii Genome Sequence
Malus domestica Genome Sequence
Manihot esculenta Genome Sequence
Marchantia polymorpha Genome Sequence
Medicago truncatula Genome Sequence
Micromonas commoda Genome Sequence
Nelumbo nucifera Genome Sequence
Nicotiana tabacum Genome Sequence
Olea europaea Genome Sequence
Oryza sativa ssp. japonica Genome Sequence
Papaver somniferum Genome Sequence
Petunia axillaris Genome Sequence
Phaseolus vulgaris Genome Sequence
Physcomitrium patens Genome Sequence
Pisum sativum Genome Sequence
Populus trichocarpa Genome Sequence
Prasinoderma coloniale Genome Sequence
Prunus persica Genome Sequence
Punica granatum Genome Sequence
Quercus lobata Genome Sequence
Rhododendron simsii Genome Sequence
Rosa chinensis Genome Sequence
Salix brachista Genome Sequence
Salvia bowleyana Genome Sequence
Sapria himalayana Genome Sequence
Schrenkiella parvula Genome Sequence
Sechium edule Genome Sequence
Selaginella moellendorffii Genome Sequence
Selenicereus undatus Genome Sequence
Sequoiadendron giganteum Genome Sequence
Simmondsia chinensis Genome Sequence
Solanum lycopersicum Genome Sequence
Solanum pennellii Genome Sequence
Solanum tuberosum Genome Sequence
Striga asiatica Genome Sequence
Tarenaya hassleriana Genome Sequence
Theobroma cacao Genome Sequence
Trifolium pratense Genome Sequence
Tripterygium wilfordii Genome Sequence
Trochodendron aralioides Genome Sequence
Utricularia gibba Genome Sequence
Vaccinium macrocarpon Genome Sequence
Vanilla planifolia Genome Sequence
Vigna mungo Genome Sequence
Vitis vinifera Genome Sequence
Zea mays Genome Sequence
Enter sequence below in
FASTA
format
Advanced options
Filter low complexity
Expect
1e-10
1e-5
0.001
0.1
1
10
Matrix
PAM30
PAM70
BLOSUM45
BLOSUM62
BLOSUM80
Perform gapped alignment
Query Genetic codes - (T)Blastx only
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Output format
Pairwise
query-anchored showing identities
query-anchored no identities
flat query-anchored, show identities
flat query-anchored, no identities
XML BLAST output
tabular
tabular with comment lines
Text ASN.1
Binary ASN.1
Comma-seperated values
BLAST archive format (ASN.1)
Descriptions
0
1
10
50
100
250
500
Alignments
0
1
10
50
100
250
500