Gene: Solyc09g074990.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc09g074990.4
  • Transcript Identifier Solyc09g074990.4.1
  • Gene Type Coding gene
  • Location SL4.0ch09 : 62997599-63004157 : positive

Gene Family Information

Gene Duplication Information

Labels

Identifiers

  • tid Solyc09g074990.4.1
  • uniprot A0A3Q7I7B5
  • gene_id Solyc09g074990

Descriptions

  • Description DNA mismatch repair protein PMS1 (AHRD V3.3 *** A0A1U8FBY8_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006772
IEA
GOA Databasethiamine metabolic process
GO:0000398
ISO
PLAZA Homology (enrichment)mRNA splicing, via spliceosome HOM05D002199
GO:0006396
ISO
PLAZA Homology (enrichment)RNA processing HOM05D002199
GO:0048316
ISO
PLAZA Integrative Orthologyseed development AT4G02460
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT4G02460
GO:0006310
ISO
PLAZA Integrative OrthologyDNA recombination AT4G02460
GO:0000956
ISO
PLAZA Homology (enrichment)nuclear-transcribed mRNA catabolic process HOM05D002199
GO:0010154
ISO
PLAZA Integrative Orthologyfruit development AT4G02460
GO:0006298
IBA
IEA
GOA Databasemismatch repair
GO:0006298
IEA
InterPromismatch repair
GO:0009229
IEA
GOA Databasethiamine diphosphate biosynthetic process
GO:0016310
IEA
GOA Databasephosphorylation
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030975
IEA
GOA Databasethiamine binding
GO:0030983
IEA
GOA Databasemismatched DNA binding
GO:0030983
IEA
InterPromismatched DNA binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0016301
IEA
GOA Databasekinase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0004788
IEA
GOA Databasethiamine diphosphokinase activity
GO:0016887
IEA
InterProATP hydrolysis activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G02460
GO:0032300
IBA
IEA
GOA Databasemismatch repair complex
GO:0032300
IEA
InterPromismatch repair complex
GO:0032389
IBA
GOA DatabaseMutLalpha complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR037198 MutL, C-terminal domain superfamily
IPR042121 MutL, C-terminal domain, regulatory subdomain
IPR014790 MutL, C-terminal, dimerisation
IPR042120 MutL, C-terminal domain, dimerisation subdomain
IPR013507 DNA mismatch repair protein, S5 domain 2-like
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
IPR038973 DNA mismatch repair protein MutL/Mlh/Pms
Mapman id Description
14.7.2.2 DNA damage response.mismatch repair (MMR).MLH1-PMS1 heterodimer.component PMS1