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Dicots PLAZA 5.0
Data
Overview
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Gene families
Expansion plot
Gene family finder
Synteny plot
Colinearity
Ks-graphs
WGDotplot
Colinear region finder
Localization
Functional clusters
WGMapping
Pan-Genome
Pan and core families
Synteny scores overview
Synteny score chart
HOT-Region
Other
Interactive Phylogenetics Module
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Gene
GO/Interpro description
Gene family
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Colinear Region Finder
Find specific colinear regions
Find enriched colinear regions
Results
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Species Selection
Viridiplantae
Chlorophyta
Micromonas commoda
Chlamydomonas reinhardtii
Prasinoderma coloniale
Streptophytina
Chara braunii
Embryophyta
Bryophyta
MossesLiverworts
Physcomitrium patens
Marchantia polymorpha
Anthoceros agrestis
Tracheophyta
Selaginella moellendorffii
Spermatophyta
Sequoiadendron giganteum
Magnoliopsida
Amborella trichopoda
Mesangiospermae
Liliopsida
Vanilla planifolia
Poaceae
Zea mays
Oryza sativa ssp. japonica
Magnolia biondii
Ceratophyllum demersum
Ranunculales
Papaver somniferum
Aquilegia oxysepala
Nelumbo nucifera
Trochodendron aralioides
Pentapetalae
Caryophyllales
Simmondsia chinensis
Selenicereus undatus
Amaranthus hybridus
Chenopodiaceae
Chenopodium quinoa
Beta vulgaris
Asterids
Campanulids
Lonicera japonica
Daucus carota
Asteraceae
Lactuca sativa
Asteroideae
Helianthus annuus
Erigeron canadensis
Lamiids
Coffea canephora
Solanaceae
Petunia axillaris
Nicotiana tabacum
Solanoideae
Solanum
Solanum tuberosum
Solanum pennellii
Solanum lycopersicum
Capsicum annuum
Lamiales
Olea europaea
Avicennia marina
Utricularia gibba
Salvia bowleyana
Striga asiatica
Erythranthe guttata
Cornales
Hydrangea macrophylla
Davidia involucrata
Ericales
Camellia sinensis var. sinensis
Actinidia chinensis
Ericaceae
Vaccinium macrocarpon
Rhododendron simsii
Rosids
Vitis vinifera
Fabids
Tripterygium wilfordii
Malpighiales
Saliceae
Salix brachista
Populus trichocarpa
Sapria himalayana
Manihot esculenta
Arachis hypogaea
Lupinus albus
NPAAA_clade
Phaseoleae
Vigna mungo
Phaseolus vulgaris
Glycine max
Hologalegina
Lotus japonicus
IRL_clade
Cicer arietinum L.
Pisum sativum
Trifolieae
Trifolium pratense
Medicago truncatula
Rosales
Cannabis sativa
Rosaceae
Amygdaloideae
Prunus persica
Malus domestica
Rosoideae
Rosa chinensis
Fragaria
Fragaria vesca
Fragaria x ananassa
Cucurbitaceae
Sechium edule
Benincaseae
Citrullus lanatus
Cucumis
Cucumis sativus L.
Cucumis melo
Fagales
Quercus lobata
Carya illinoinensis
Betulaceae
Carpinus fangiana
Corylus avellana
Malvids
Myrtales
Punica granatum
Eucalyptus grandis
Sapindales
Citrus clementina
Acer truncatum
Malvaceae
Durio zibethinus
Gossypium
Gossypium raimondii
Gossypium hirsutum
Theobroma cacao
Corchorus olitorius
Brassicales
Carica papaya
Tarenaya hassleriana
Brassicaceae
Aethionema arabicum
Eutrema salsugineum
Schrenkiella parvula
Brassica
Brassica napus
Brassica rapa
Brassica oleracea
Brassica carinata
Cardamine hirsuta
Camelineae
Capsella rubella
Arabidopsis
Arabidopsis thaliana
Arabidopsis lyrata
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Ignore Species
Include Species
Clades Quick Selection
Clade selection
No clade selected
Arabidopsis (2)
Camelineae (3)
Brassica (4)
Brassicaceae (11)
Brassicales (13)
Gossypium (2)
Malvaceae (5)
Sapindales (2)
Myrtales (2)
Malvids (22)
Betulaceae (2)
Fagales (4)
Cucumis (2)
Benincaseae (3)
Cucurbitaceae (4)
Fragaria (2)
Rosoideae (3)
Amygdaloideae (2)
Rosaceae (5)
Rosales (6)
Trifolieae (2)
IRL_clade (4)
Hologalegina (5)
Phaseoleae (3)
NPAAA_clade (8)
Saliceae (2)
Malpighiales (4)
Fabids (29)
Rosids (52)
Ericaceae (2)
Ericales (4)
Cornales (2)
Lamiales (6)
Solanum (3)
Solanoideae (4)
Solanaceae (6)
Lamiids (13)
Asteroideae (2)
Asteraceae (3)
Campanulids (5)
Asterids (24)
Chenopodiaceae (2)
Caryophyllales (5)
Pentapetalae (81)
Ranunculales (2)
Poaceae (2)
Liliopsida (3)
Mesangiospermae (90)
Magnoliopsida (91)
Spermatophyta (92)
Tracheophyta (93)
MossesLiverworts (2)
Bryophyta (3)
Embryophyta (96)
Streptophytina (97)
Chlorophyta (2)
Viridiplantae (100)
Species selection
Ignore all
Exclude all
Include all
Parameters
Minimum number of segments within the colinear region
2
Maximum number of segments within the colinear region
2
i-ADHoRe colinearity run
default experiment, lvl2 only, without ks dating
Your selection is not compatible with your
'Maximum number of segments' selection
Species selection
Organism(s)
Anthoceros agrestis
Aethionema arabicum
Acer truncatum
Actinidia chinensis
Arabidopsis lyrata
Avicennia marina
Amaranthus hybridus
Aquilegia oxysepala
Arachis hypogaea
Arabidopsis thaliana
Amborella trichopoda
Brassica carinata
Brassica napus
Brassica oleracea
Brassica rapa
Beta vulgaris
Camellia sinensis var. sinensis
Capsicum annuum
Cannabis sativa
Cicer arietinum L.
Corylus avellana
Chara braunii
Coffea canephora
Citrus clementina
Ceratophyllum demersum
Carpinus fangiana
Cardamine hirsuta
Carya illinoinensis
Citrullus lanatus
Cucumis melo
Corchorus olitorius
Carica papaya
Chenopodium quinoa
Chlamydomonas reinhardtii
Capsella rubella
Cucumis sativus L.
Daucus carota
Davidia involucrata
Durio zibethinus
Erigeron canadensis
Eucalyptus grandis
Erythranthe guttata
Eutrema salsugineum
Fragaria x ananassa
Fragaria vesca
Gossypium hirsutum
Glycine max
Gossypium raimondii
Helianthus annuus
Hydrangea macrophylla
Lupinus albus
Lotus japonicus
Lonicera japonica
Lactuca sativa
Magnolia biondii
Micromonas commoda
Malus domestica
Manihot esculenta
Marchantia polymorpha
Medicago truncatula
Nelumbo nucifera
Nicotiana tabacum
Olea europaea
Oryza sativa ssp. japonica
Petunia axillaris
Prasinoderma coloniale
Punica granatum
Physcomitrium patens
Prunus persica
Pisum sativum
Papaver somniferum
Populus trichocarpa
Phaseolus vulgaris
Quercus lobata
Rosa chinensis
Rhododendron simsii
Striga asiatica
Salvia bowleyana
Salix brachista
Simmondsia chinensis
Sechium edule
Sequoiadendron giganteum
Sapria himalayana
Solanum lycopersicum
Selaginella moellendorffii
Schrenkiella parvula
Solanum pennellii
Solanum tuberosum
Selenicereus undatus
Trochodendron aralioides
Theobroma cacao
Tarenaya hassleriana
Trifolium pratense
Tripterygium wilfordii
Utricularia gibba
Vaccinium macrocarpon
Vigna mungo
Vanilla planifolia
Vitis vinifera
Zea mays
None selected
Select all
Anthoceros agrestis
Aethionema arabicum
Acer truncatum
Actinidia chinensis
Arabidopsis lyrata
Avicennia marina
Amaranthus hybridus
Aquilegia oxysepala
Arachis hypogaea
Arabidopsis thaliana
Amborella trichopoda
Brassica carinata
Brassica napus
Brassica oleracea
Brassica rapa
Beta vulgaris
Camellia sinensis var. sinensis
Capsicum annuum
Cannabis sativa
Cicer arietinum L.
Corylus avellana
Chara braunii
Coffea canephora
Citrus clementina
Ceratophyllum demersum
Carpinus fangiana
Cardamine hirsuta
Carya illinoinensis
Citrullus lanatus
Cucumis melo
Corchorus olitorius
Carica papaya
Chenopodium quinoa
Chlamydomonas reinhardtii
Capsella rubella
Cucumis sativus L.
Daucus carota
Davidia involucrata
Durio zibethinus
Erigeron canadensis
Eucalyptus grandis
Erythranthe guttata
Eutrema salsugineum
Fragaria x ananassa
Fragaria vesca
Gossypium hirsutum
Glycine max
Gossypium raimondii
Helianthus annuus
Hydrangea macrophylla
Lupinus albus
Lotus japonicus
Lonicera japonica
Lactuca sativa
Magnolia biondii
Micromonas commoda
Malus domestica
Manihot esculenta
Marchantia polymorpha
Medicago truncatula
Nelumbo nucifera
Nicotiana tabacum
Olea europaea
Oryza sativa ssp. japonica
Petunia axillaris
Prasinoderma coloniale
Punica granatum
Physcomitrium patens
Prunus persica
Pisum sativum
Papaver somniferum
Populus trichocarpa
Phaseolus vulgaris
Quercus lobata
Rosa chinensis
Rhododendron simsii
Striga asiatica
Salvia bowleyana
Salix brachista
Simmondsia chinensis
Sechium edule
Sequoiadendron giganteum
Sapria himalayana
Solanum lycopersicum
Selaginella moellendorffii
Schrenkiella parvula
Solanum pennellii
Solanum tuberosum
Selenicereus undatus
Trochodendron aralioides
Theobroma cacao
Tarenaya hassleriana
Trifolium pratense
Tripterygium wilfordii
Utricularia gibba
Vaccinium macrocarpon
Vigna mungo
Vanilla planifolia
Vitis vinifera
Zea mays
Settings
Minimum overrepresentation ratio of the species within the colinear region
2x
5x
10x
20x
Minimum size of the colinear region
2
Maximum size of the colinear region
2
i-ADHoRe colinearity run
default experiment, lvl2 only, without ks dating