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Dicots PLAZA 5.0
Data
Overview
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Gene families
Expansion plot
Gene family finder
Synteny plot
Colinearity
Ks-graphs
WGDotplot
Colinear region finder
Localization
Functional clusters
WGMapping
Pan-Genome
Pan and core families
Synteny scores overview
Synteny score chart
HOT-Region
Other
Interactive Phylogenetics Module
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GO/Interpro description
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WGDotplot
Tool that reports in a pairwise manner all colinear regions between and/or within species.
JS WGDotplot
Circleplot
Parameters
Organism 1
Organism 2
Comparing
Dating method
mean ks
ks
kn
mean 4dtv
4dtv
Show multiplicons
Canvas rendering
SVG rendering
Draw
Reset
Clear
Build Parameters
Organism
Acer truncatum
Actinidia chinensis
Aethionema arabicum
Amaranthus hybridus
Amborella trichopoda
Anthoceros agrestis
Aquilegia oxysepala
Arabidopsis lyrata
Arabidopsis thaliana
Arachis hypogaea
Avicennia marina
Beta vulgaris
Brassica carinata
Brassica napus
Brassica oleracea
Brassica rapa
Camellia sinensis var. sinensis
Cannabis sativa
Capsella rubella
Capsicum annuum
Cardamine hirsuta
Carica papaya
Carpinus fangiana
Carya illinoinensis
Ceratophyllum demersum
Chara braunii
Chenopodium quinoa
Chlamydomonas reinhardtii
Cicer arietinum L.
Citrullus lanatus
Citrus clementina
Coffea canephora
Corchorus olitorius
Corylus avellana
Cucumis melo
Cucumis sativus L.
Daucus carota
Davidia involucrata
Durio zibethinus
Erigeron canadensis
Erythranthe guttata
Eucalyptus grandis
Eutrema salsugineum
Fragaria vesca
Fragaria x ananassa
Glycine max
Gossypium hirsutum
Gossypium raimondii
Helianthus annuus
Hydrangea macrophylla
Lactuca sativa
Lonicera japonica
Lotus japonicus
Lupinus albus
Magnolia biondii
Malus domestica
Manihot esculenta
Marchantia polymorpha
Medicago truncatula
Micromonas commoda
Nelumbo nucifera
Nicotiana tabacum
Olea europaea
Oryza sativa ssp. japonica
Papaver somniferum
Petunia axillaris
Phaseolus vulgaris
Physcomitrium patens
Pisum sativum
Populus trichocarpa
Prasinoderma coloniale
Prunus persica
Punica granatum
Quercus lobata
Rhododendron simsii
Rosa chinensis
Salix brachista
Salvia bowleyana
Sapria himalayana
Schrenkiella parvula
Sechium edule
Selaginella moellendorffii
Selenicereus undatus
Sequoiadendron giganteum
Simmondsia chinensis
Solanum lycopersicum
Solanum pennellii
Solanum tuberosum
Striga asiatica
Tarenaya hassleriana
Theobroma cacao
Trifolium pratense
Tripterygium wilfordii
Trochodendron aralioides
Utricularia gibba
Vaccinium macrocarpon
Vanilla planifolia
Vigna mungo
Vitis vinifera
Zea mays
Comparing
default experiment, lvl2 only, without ks dating
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