Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism Homologous gene familyOrthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr0c11g0499371 Rosa chinensis HOM05D004863 ORTHO05D005802 5.8e-283 976.9 487 100.0
RcHm_v2.0_Chr7g0236141 Rosa chinensis HOM05D004863 ORTHO05D005802 5.3e-268 927.2 467 99.4
FvH4_5g35270 Fragaria vesca HOM05D004863 ORTHO05D005802 3.2e-212 741.9 467 81.6
FAN13G2483 Fragaria x ananassa HOM05D004863 ORTHO05D005802 3.5e-211 738.4 466 81.1
FAN18G0869 Fragaria x ananassa HOM05D004863 ORTHO05D005802 4.3e-209 731.5 489 77.9
FAN04G1688 Fragaria x ananassa HOM05D004863 ORTHO05D005802 9.5e-209 730.3 475 79.8
FAN08G0290 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.9e-196 689.5 475 76.0
RcHm_v2.0_Chr7g0236461 Rosa chinensis HOM05D004863 ORTHO05D005802 6.9e-175 617.8 318 98.4
RcHm_v2.0_Chr7g0236501 Rosa chinensis HOM05D004863 ORTHO05D005802 6.9e-175 617.8 318 98.4
RcHm_v2.0_Chr5g0049691 Rosa chinensis HOM05D004863 ORTHO05D005802 2.2e-128 463.4 264 89.4
RcHm_v2.0_Chr7g0230601 Rosa chinensis HOM05D004863 ORTHO05D005802 2.5e-124 449.9 249 91.2
Cfa001286 Carpinus fangiana HOM05D004863 ORTHO05D005802 4.0e-106 389.4 484 51.0
QL08p063631 Quercus lobata HOM05D004863 ORTHO05D005802 1.2e-105 387.9 480 50.6
CiPaw.01G301000 Carya illinoinensis HOM05D004863 ORTHO05D005802 1.3e-101 374.4 476 49.8
Dinv21763 Davidia involucrata HOM05D004863 ORTHO05D005802 1.7e-101 374.0 521 48.2
RcHm_v2.0_Chr0c11g0499581 Rosa chinensis HOM05D004863 ORTHO05D005802 1.7e-101 374.0 188 100.0
TWI09G1305 Tripterygium wilfordii HOM05D004863 ORTHO05D005802 6.6e-101 372.1 487 49.7
Migut.F00644 Erythranthe guttata HOM05D004863 ORTHO05D005802 9.5e-100 368.2 504 48.0
Potri.008G072300 Populus trichocarpa HOM05D004863 ORTHO05D005802 2.3e-98 363.6 484 47.7
Ciclev10031002m.g Citrus clementina HOM05D004863 ORTHO05D005802 1.3e-96 357.8 490 47.3
CANSAT56G0816 Cannabis sativa HOM05D004863 ORTHO05D005802 1.7e-96 357.5 485 48.0
Haze_17264 Corylus avellana HOM05D000087 ORTHO05D000793 1.2e-94 351.3 458 50.4
Manes.10G009400 Manihot esculenta HOM05D004863 ORTHO05D005802 3.5e-94 349.7 483 47.0
Prupe.2G254800 Prunus persica HOM05D004863 ORTHO05D005802 1.7e-93 347.4 489 47.6
CANSAT32G0002 Cannabis sativa HOM05D004863 ORTHO05D005802 3.9e-93 346.3 483 47.0
Actinidia00665 Actinidia chinensis HOM05D004863 ORTHO05D005802 7.3e-92 342.0 462 48.7
Hma1.2p1_3100F.1_g332690 Hydrangea macrophylla HOM05D004863 ORTHO05D005802 1.2e-91 341.3 489 48.3
SalBow3G1147 Salvia bowleyana HOM05D004863 ORTHO05D005802 4.7e-91 339.3 507 45.8
Sopen06g031290 Solanum pennellii HOM05D004863 ORTHO05D005802 1.4e-90 337.8 494 45.1
SGA_v2.0_scaffold60G20969 Striga asiatica HOM05D004863 ORTHO05D005802 7.6e-89 332.0 505 44.8
MSTRG.8933 Avicennia marina HOM05D004863 ORTHO05D005802 1.1e-87 328.2 497 45.9
Sabra08G0053500 Salix brachista HOM05D004863 ORTHO05D005802 3.0e-85 320.1 486 45.5
Nitab4.5_0001163g0110 Nicotiana tabacum HOM05D004863 ORTHO05D005802 5.1e-85 319.3 527 41.6
Nitab4.5_0012306g0020 Nicotiana tabacum HOM05D004863 ORTHO05D005802 1.9e-84 317.4 535 40.9
CsaV3_5G010370 Cucumis sativus L. HOM05D004863 ORTHO05D005802 1.1e-82 311.6 498 45.0
PGR142G2246 Punica granatum HOM05D004863 ORTHO05D005802 1.8e-82 310.8 491 44.8
MELO3C018373.2 Cucumis melo HOM05D004863 ORTHO05D005802 5.8e-81 305.8 494 44.5
MD12G1179600 Malus domestica HOM05D004863 ORTHO05D005802 9.9e-81 305.1 437 47.8
LjContig00357g0010590 Lotus japonicus HOM05D004863 ORTHO05D005802 6.4e-80 302.4 492 42.5
Eucgr.G03083 Eucalyptus grandis HOM05D004863 ORTHO05D005802 4.6e-78 296.2 479 43.4
GSVIVG01032766001 Vitis vinifera HOM05D004863 ORTHO05D005802 4.6e-78 296.2 488 44.7
Sed0025167 Sechium edule HOM05D004863 ORTHO05D005802 1.3e-77 294.7 435 46.0
Cc02_g05730 Coffea canephora HOM05D004863 ORTHO05D005802 2.3e-77 293.9 491 45.2
THA.LOC104816534 Tarenaya hassleriana HOM05D004863 ORTHO05D005802 1.9e-76 290.8 474 42.6
CAN.G1432.18 Capsicum annuum HOM05D004863 ORTHO05D005802 9.6e-76 288.5 497 41.2
Atru.chr12.77 Acer truncatum HOM05D004863 ORTHO05D005802 2.4e-74 283.9 496 42.5
Ca_05985_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 2.9e-72 276.9 486 43.2
Cpa.g.sc19.141 Carica papaya HOM05D004863 ORTHO05D005802 8.4e-72 275.4 531 39.4
Rhsim09G0179600 Rhododendron simsii HOM05D004863 ORTHO05D005802 1.4e-71 274.6 535 39.4
Glyma.14G057200 Glycine max HOM05D004863 ORTHO05D005802 1.0e-69 268.5 481 41.2
VMungo0647G0293 Vigna mungo HOM05D004863 ORTHO05D005802 1.0e-69 268.5 465 42.6
TAR357G0004 Trochodendron aralioides HOM05D004863 ORTHO05D005802 1.9e-68 264.2 476 39.7
CARHR207780 Cardamine hirsuta HOM05D004863 ORTHO05D005802 3.3e-68 263.5 487 39.8
ECA233G5735 Erigeron canadensis HOM05D000718 ORTHO05D005802 7.4e-68 262.3 487 39.8
Phvul.007G217900 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 1.6e-67 261.2 480 40.6
Aa31LG11G6560 Aethionema arabicum HOM05D004863 ORTHO05D005802 6.2e-67 259.2 548 38.7
Aqoxy1G01634 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 1.2e-65 255.0 493 39.1
Phvul.008G221700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 1.2e-65 255.0 459 42.0
Aqoxy5G04144 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 1.5e-65 254.6 492 38.8
BcaC06g32260 Brassica carinata HOM05D004863 ORTHO05D005297 2.6e-65 253.8 478 39.5
Sc10g0002560 Simmondsia chinensis HOM05D004863 ORTHO05D005802 5.8e-65 252.7 498 40.4
Thhalv10013002m.g Eutrema salsugineum HOM05D004863 ORTHO05D005802 2.9e-64 250.4 479 39.2
Phvul.001G192700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 4.9e-64 249.6 484 40.1
AL6G15380 Arabidopsis lyrata HOM05D004863 ORTHO05D005802 3.5e-62 243.4 478 38.3
AUR62012290 Chenopodium quinoa HOM05D004863 ORTHO05D005802 6.0e-62 242.7 504 37.7
arahy.Tifrunner.gnm1.ann1.U87T4F Arachis hypogaea HOM05D004863 ORTHO05D005802 1.0e-61 241.9 509 37.7
Lalb_Chr10g0105231 Lupinus albus HOM05D004863 ORTHO05D005802 1.0e-61 241.9 340 45.3
RcHm_v2.0_Chr7g0231181 Rosa chinensis HOM05D004863 ORTHO05D005802 1.0e-61 241.9 127 94.5
Duzib128G0112 Durio zibethinus HOM05D004863 ORTHO05D005802 1.3e-61 241.5 517 38.9
arahy.Tifrunner.gnm1.ann1.SVWC8K Arachis hypogaea HOM05D004863 ORTHO05D005802 1.8e-61 241.1 516 37.6
COL.COLO4_25779 Corchorus olitorius HOM05D007663 ORTHO05D009455 1.9e-60 237.7 486 39.5
ECA234G2111 Erigeron canadensis HOM05D004863 ORTHO05D005802 1.9e-60 237.7 474 38.0
Nn2g10959 Nelumbo nucifera HOM05D004863 ORTHO05D005802 7.4e-60 235.7 495 37.8
AT5G05490 Arabidopsis thaliana HOM05D004863 ORTHO05D005802 9.6e-60 235.3 478 37.9
A10p30780 Brassica napus HOM05D004863 ORTHO05D005297 2.1e-59 234.2 466 37.6
Ah.16g103820 Amaranthus hybridus HOM05D004863 ORTHO05D005802 4.8e-59 233.0 509 37.1
PSO017G6293 Papaver somniferum HOM05D004863 ORTHO05D005802 4.8e-59 233.0 507 37.1
Sp6g37360 Schrenkiella parvula HOM05D004863 ORTHO05D005802 4.8e-59 233.0 481 37.8
BraA10t45119Z Brassica rapa HOM05D004863 ORTHO05D005297 8.2e-59 232.3 473 37.4
C09p71270 Brassica napus HOM05D004863 ORTHO05D005297 1.4e-58 231.5 476 39.1
BolC9t59888H Brassica oleracea HOM05D004863 ORTHO05D005802 1.4e-58 231.5 476 39.1
Psat2g030120 Pisum sativum HOM05D004863 ORTHO05D005802 1.4e-58 231.5 488 37.9
Ca_05983_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 1.8e-58 231.1 398 43.7
EL10Ac2g04883 Beta vulgaris HOM05D004863 ORTHO05D005802 6.9e-58 229.2 509 35.6
Sed0002460 Sechium edule HOM05D004863 ORTHO05D005802 9.0e-58 228.8 429 41.0
PSO170G5836 Papaver somniferum HOM05D004863 ORTHO05D005802 1.2e-57 228.4 513 36.8
RcHm_v2.0_Chr7g0236431 Rosa chinensis HOM05D004863 ORTHO05D005802 1.5e-57 228.0 374 42.8
Carub.0006s0439 Capsella rubella HOM05D004863 ORTHO05D005802 3.4e-57 226.9 479 37.2
Ah.16g108070 Amaranthus hybridus HOM05D004863 ORTHO05D005802 7.6e-57 225.7 505 37.0
Lj4g0013997 Lotus japonicus HOM05D004863 ORTHO05D005802 1.2e-54 218.4 483 36.9
RcHm_v2.0_Chr7g0231171 Rosa chinensis HOM05D004863 ORTHO05D005802 3.0e-53 213.8 136 82.4
Solyc06g074870.3 Solanum lycopersicum HOM05D004863 ORTHO05D005802 1.5e-52 211.5 397 40.1
ClCG07G004460 Citrullus lanatus HOM05D004863 ORTHO05D005802 1.9e-52 211.1 454 39.6
Medtr5g083120 Medicago truncatula HOM05D004863 ORTHO05D005802 1.9e-52 211.1 486 37.9
Gorai.012G078600 Gossypium raimondii HOM05D004863 ORTHO05D005802 7.4e-52 209.1 450 36.0
EL10Ac8g19300 Beta vulgaris HOM05D004863 ORTHO05D005802 9.7e-52 208.8 553 33.1
Gohir.D04G070101 Gossypium hirsutum HOM05D004863 ORTHO05D005802 9.7e-52 208.8 450 36.0
Actinidia00966 Actinidia chinensis HOM05D004863 ORTHO05D005802 1.3e-51 208.4 357 44.5
Peaxi162Scf00114g01014 Petunia axillaris HOM05D004863 ORTHO05D005802 2.4e-50 204.1 397 40.3
Gohir.A05G331501 Gossypium hirsutum HOM05D004863 ORTHO05D005802 4.1e-50 203.4 453 36.4
TPR.G38454 Trifolium pratense HOM05D004863 ORTHO05D005802 1.9e-47 194.5 522 35.8
TPR.G25338 Trifolium pratense HOM05D004863 ORTHO05D005802 2.5e-47 194.1 367 39.5
FAN18G1063 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.2e-46 191.8 164 64.0
AUR62022930 Chenopodium quinoa HOM05D004863 ORTHO05D005802 1.0e-45 188.7 488 35.7
RcHm_v2.0_Chr7g0230591 Rosa chinensis HOM05D004863 ORTHO05D005802 1.7e-40 171.4 91 92.3
Medtr5g081260 Medicago truncatula HOM05D004863 ORTHO05D005802 5.0e-40 169.9 358 38.3
MBI03_g10782_MAGBIO Magnolia biondii HOM05D004863 ORTHO05D005802 8.5e-40 169.1 354 39.5
RcHm_v2.0_Chr7g0231161 Rosa chinensis HOM05D004863 ORTHO05D005802 4.7e-38 163.3 104 79.8
FAN18G1445 Fragaria x ananassa HOM05D004863 ORTHO05D005802 7.9e-38 162.5 202 52.5
DCAR_011837 Daucus carota HOM05D004863 ORTHO05D001062 1.8e-37 161.4 477 32.7
RcHm_v2.0_Chr0c11g0499571 Rosa chinensis HOM05D004863 ORTHO05D005802 2.8e-35 154.1 74 100.0
CAN.G1001.50 Capsicum annuum HOM05D004863 ORTHO05D005802 8.2e-35 152.5 144 54.2
unitig_46.g18609 Utricularia gibba HOM05D004863 ORTHO05D005802 1.8e-34 151.4 263 41.4
Glyma.02G263700 Glycine max HOM05D004863 ORTHO05D005802 3.1e-34 150.6 391 35.8
TAR362G0045 Trochodendron aralioides HOM05D004863 ORTHO05D005802 9.4e-31 139.0 170 48.8
HPP92_003692 Vanilla planifolia HOM05D004863 ORTHO05D005802 9.4e-31 139.0 485 28.7
FvH4_5g27761 Fragaria vesca HOM05D004863 ORTHO05D005802 4.7e-30 136.7 136 60.3
PSO170G1093 Papaver somniferum HOM05D004863 ORTHO05D005802 1.0e-29 135.6 481 31.6
CDE09G0264 Ceratophyllum demersum HOM05D004863 ORTHO05D005802 3.7e-27 127.1 253 38.7
FvH4_5g31060 Fragaria vesca HOM05D004863 ORTHO05D005802 3.7e-27 127.1 92 70.7
RcHm_v2.0_Chr5g0049701 Rosa chinensis HOM05D004863 ORTHO05D005802 3.1e-26 124.0 65 90.8
PSO063G7659 Papaver somniferum HOM05D004863 ORTHO05D005802 3.0e-21 107.5 114 50.0
CSS0049037 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 2.0e-20 104.8 234 38.0
CSS0008249 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 2.6e-20 104.4 228 39.0
Thecc.10G012000 Theobroma cacao HOM05D004863 ORTHO05D005802 8.2e-19 99.4 79 57.0
SEGI_17620 Sequoiadendron giganteum HOM05D004863 ORTHO05D005802 3.1e-18 97.4 393 27.5
HanXRQChr08g0221801 Helianthus annuus HOM05D004863 ORTHO05D005802 4.1e-18 97.1 122 44.3
ATR0174G036 Amborella trichopoda HOM05D004863 ORTHO05D005802 4.5e-17 93.6 506 27.1
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 5.5e-15 86.7 444 29.1
Pp3c3_26738 Physcomitrium patens HOM05D004863 ORTHO05D005802 1.3e-11 75.5 427 25.5
Oeu041939.1 Olea europaea HOM05D004863 ORTHO05D005802 1.0e-08 65.9 56 58.9
PSO063G5055 Papaver somniferum HOM05D003057 ORTHO05D003904 1.9e-07 61.6 109 36.7
PSO478G0733 Papaver somniferum HOM05D000294 ORTHO05D000177 5.5e-07 60.1 111 39.6
FvH4_5g31180 Fragaria vesca HOM05D000076 ORTHO05D005802 1.6e-06 58.5 53 56.6
Ca_05986_v3 Cicer arietinum L. HOM05D001661 ORTHO05D001575 2.1e-06 58.2 102 42.2

Acer truncatum (1 genes)
Actinidia chinensis (2 genes)
Aethionema arabicum (1 genes)
Amaranthus hybridus (2 genes)
Amborella trichopoda (1 genes)
Anthoceros agrestis (0 genes)
Aquilegia oxysepala (2 genes)
Arabidopsis lyrata (1 genes)
Arabidopsis thaliana (1 genes)
Arachis hypogaea (2 genes)
Avicennia marina (1 genes)
Beta vulgaris (2 genes)
Brassica carinata (1 genes)
Brassica napus (2 genes)
Brassica oleracea (1 genes)
Brassica rapa (1 genes)
Camellia sinensis var. sinensis (2 genes)
Cannabis sativa (2 genes)
Capsella rubella (1 genes)
Capsicum annuum (2 genes)
Cardamine hirsuta (1 genes)
Carica papaya (1 genes)
Carpinus fangiana (1 genes)
Carya illinoinensis (1 genes)
Ceratophyllum demersum (1 genes)
Chara braunii (0 genes)
Chenopodium quinoa (2 genes)
Chlamydomonas reinhardtii (0 genes)
Cicer arietinum L. (3 genes)
Citrullus lanatus (1 genes)
Citrus clementina (1 genes)
Coffea canephora (1 genes)
Corchorus olitorius (1 genes)
Corylus avellana (1 genes)
Cucumis melo (1 genes)
Cucumis sativus L. (1 genes)
Daucus carota (1 genes)
Davidia involucrata (1 genes)
Durio zibethinus (1 genes)
Erigeron canadensis (2 genes)
Erythranthe guttata (1 genes)
Eucalyptus grandis (1 genes)
Eutrema salsugineum (1 genes)
Fragaria vesca (4 genes)
Fragaria x ananassa (6 genes)
Glycine max (2 genes)
Gossypium hirsutum (2 genes)
Gossypium raimondii (1 genes)
Helianthus annuus (1 genes)
Hydrangea macrophylla (1 genes)
Lactuca sativa (0 genes)
Lonicera japonica (0 genes)
Lotus japonicus (2 genes)
Lupinus albus (1 genes)
Magnolia biondii (1 genes)
Malus domestica (1 genes)
Manihot esculenta (1 genes)
Marchantia polymorpha (0 genes)
Medicago truncatula (2 genes)
Micromonas commoda (0 genes)
Nelumbo nucifera (1 genes)
Nicotiana tabacum (2 genes)
Olea europaea (1 genes)
Oryza sativa ssp. japonica (0 genes)
Papaver somniferum (7 genes)
Petunia axillaris (1 genes)
Phaseolus vulgaris (3 genes)
Physcomitrium patens (1 genes)
Pisum sativum (1 genes)
Populus trichocarpa (1 genes)
Prasinoderma coloniale (0 genes)
Prunus persica (1 genes)
Punica granatum (1 genes)
Quercus lobata (1 genes)
Rhododendron simsii (1 genes)
Rosa chinensis (14 genes)
Salix brachista (1 genes)
Salvia bowleyana (1 genes)
Sapria himalayana (0 genes)
Schrenkiella parvula (1 genes)
Sechium edule (2 genes)
Selaginella moellendorffii (0 genes)
Selenicereus undatus (0 genes)
Sequoiadendron giganteum (1 genes)
Simmondsia chinensis (1 genes)
Solanum lycopersicum (1 genes)
Solanum pennellii (1 genes)
Solanum tuberosum (0 genes)
Striga asiatica (1 genes)
Tarenaya hassleriana (1 genes)
Theobroma cacao (1 genes)
Trifolium pratense (2 genes)
Tripterygium wilfordii (1 genes)
Trochodendron aralioides (2 genes)
Utricularia gibba (1 genes)
Vaccinium macrocarpon (0 genes)
Vanilla planifolia (1 genes)
Vigna mungo (1 genes)
Vitis vinifera (1 genes)
Zea mays (0 genes)

Program Settings