Gene: Zm00001eb202980

General Information

Structural Information

  • Species Zea mays
  • Gene Identifier Zm00001eb202980
  • Transcript Identifier Zm00001eb202980_T002
  • Gene Type Coding gene
  • Location 4 : 225215868-225227646 : negative

Gene Family Information

  • ID HOM05D001201
  • #Genes/#Species 520/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Zm00001eb202980_T002
  • pid Zm00001eb202980_P002
  • uniprot K7V4U5
  • uniprot A0A3L6F5D9
  • uniprot A0A1D6QNC7
  • uniprot A0A1D6QN91
  • uniprot A0A1D6QNA9
  • uniprot A0A1D6QN83
  • uniprot A0A1D6QN94
  • uniprot A0A1D6QN73
  • uniprot A0A1D6QN40
  • uniprot A0A1D6QN84
  • uniprot A0A1D6QN30
  • uniprot A0A1D6QN96
  • uniprot A0A1D6QN87
  • uniprot A0A1D6QN77
  • uniprot A0A1D6QN79
  • uniprot A0A1D6QN35
  • uniprot K7U9K6
  • uniprot A0A1D6QN38
  • uniprot A0A1D6QN28
  • uniprot A0A1D6QNA0
  • V4_identifier Zm00001d053251

Descriptions

  • Description Zm00001e024712
  • Description Protein ROS1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006306
ISO
PLAZA Integrative OrthologyDNA methylation Solyc09g009080.4
GO:0010154
ISO
PLAZA Integrative Orthologyfruit development Solyc09g009080.4
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT5G04560
GO:0010150
ISO
PLAZA Integrative Orthologyleaf senescence AT4G34060
GO:0048229
ISO
PLAZA Integrative Orthologygametophyte development Os01g0218032
GO:0006342
ISO
PLAZA Integrative Orthologychromatin silencing AT2G36490
GO:0006349
ISO
PLAZA Integrative Orthologyregulation of gene expression by genetic imprinting AT5G04560
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair
GO:0009836
ISO
PLAZA Integrative Orthologyfruit ripening, climacteric Solyc09g009080.4
GO:0031936
ISO
PLAZA Integrative Orthologynegative regulation of chromatin silencing AT2G36490
GO:0010216
ISO
PLAZA Integrative Orthologymaintenance of DNA methylation AT4G34060
GO:0050832
ISO
PLAZA Integrative Orthologydefense response to fungus AT2G36490
GO:0080111
IEA
GOA DatabaseDNA demethylation
GO:0080111
IEA
InterProDNA demethylation
GO:0006284
IEA
GOA Databasebase-excision repair
GO:0006284
IEA
InterProbase-excision repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G36490
GO:0003906
ISO
PLAZA Integrative OrthologyDNA-(apurinic or apyrimidinic site) endonuclease activity AT2G36490
GO:0051747
ISO
PLAZA Integrative Orthologycytosine C-5 DNA demethylase activity AT4G34060
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0035514
IEA
GOA DatabaseDNA demethylase activity
GO:0035514
IEA
InterProDNA demethylase activity
GO:0019104
IEA
GOA DatabaseDNA N-glycosylase activity
GO:0019104
IEA
InterProDNA N-glycosylase activity
GO:0051539
IEA
GOA Database4 iron, 4 sulfur cluster binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0051536
IEA
GOA Databaseiron-sulfur cluster binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043078
ISO
PLAZA Integrative Orthologypolar nucleus AT5G04560
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003265 HhH-GPD domain
IPR044811 DNA glycosylase, plant
IPR011257 DNA glycosylase
IPR017956 AT hook, DNA-binding motif
Mapman id Description
12.5.3.1 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.methylcytosine-specific DNA glycosylase (ROS1)