Gene: Sopen11g027520
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen11g027520
- Transcript Identifier Sopen11g027520.1
- Gene Type Coding gene
- Location Spenn-ch11 : 63190559-63195174 : negative
Gene Family Information
- ID HOM05D001423
- #Genes/#Species 441/100
- Phylogenetic origin
- ID ORTHO05D001412
- #Genes/#Species 412/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen11g027520.1
Descriptions
- Description Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway. Binds DPA and RBR1 proteins. Expressed throughout the cell cycle. Abundance increased by auxin through stabilization of the protein. Elevates CDK levels and activity, even under hormone-free conditions. Promotes cell division and shortens cell doubling time, inhibits cell growth. Transgenic plants overexpressing AtE2Fa contained an increased level of AtE2Fb transcripts that is paralleled by an increase in the amount of the AtE2Fb protein, suggesting that AtE2Fb expression might actually be up-regulated by the AtE2Fa transcription factor. | E2F transcription factor 1 (E2F1) | CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding , Transcription factor E2F/dimerisation partner (TDP) , E2F Family | BEST Arabidopsis thaliana protein match is: E2F transcription factor 3
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0051301 | ISO | PLAZA Integrative Orthology | cell division | AT1G47870 |
GO:0051446 | ISO | PLAZA Integrative Orthology | positive regulation of meiotic cell cycle | AT5G22220 |
GO:0010767 | ISO | PLAZA Integrative Orthology | regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage | AT1G47870 |
GO:0019760 | ISO | PLAZA Integrative Orthology | glucosinolate metabolic process | AT1G47870 |
GO:0051782 | ISO | PLAZA Integrative Orthology | negative regulation of cell division | AT1G47870 |
GO:0045893 | ISO | PLAZA Integrative Orthology | positive regulation of transcription, DNA-templated | AT5G22220 |
GO:0051302 | ISO | PLAZA Integrative Orthology | regulation of cell division | AT5G22220 |
GO:0009733 | ISO | PLAZA Integrative Orthology | response to auxin | AT5G22220 |
GO:0010090 | ISO | PLAZA Integrative Orthology | trichome morphogenesis | AT5G22220 |
GO:0042023 | ISO | PLAZA Integrative Orthology | DNA endoreduplication | AT1G47870 |
GO:0043068 | ISO | PLAZA Integrative Orthology | positive regulation of programmed cell death | AT1G47870 |
GO:0008284 | ISO | PLAZA Integrative Orthology | positive regulation of cell population proliferation | AT5G22220 |
GO:0000902 | ISO | PLAZA Integrative Orthology | cell morphogenesis | AT1G47870 |
GO:0006357 | IEA | InterPro | regulation of transcription by RNA polymerase II | |
GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0046982 | ISO | PLAZA Integrative Orthology | protein heterodimerization activity | AT1G47870 |
GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G22220 |
GO:0003700 | ISO | PLAZA Integrative Orthology | DNA-binding transcription factor activity | AT5G22220 |
GO:0003677 | ISO | PLAZA Integrative Orthology | DNA binding | AT5G22220 |
GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | AT1G47870 |
GO:0046983 | IEA | InterPro | protein dimerization activity | |
GO:0000978 | IEA | InterPro | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT5G22220 |
GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G22220 |
GO:0005667 | IEA | InterPro | transcription regulator complex | |
GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT1G47870 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
IPR036390 | Winged helix DNA-binding domain superfamily |
IPR015633 | E2F Family |
IPR037241 | E2F-DP heterodimerization region |
IPR036388 | Winged helix-like DNA-binding domain superfamily |
IPR032198 | E2F transcription factor, CC-MB domain |
Mapman id | Description |
---|---|
13.1.2.1.4.1 | Cell cycle organisation.cell cycle control.regulation.MuvB/DREAM regulatory complexes.E2F-DP dimer.component E2F |
15.5.10 | RNA biosynthesis.transcriptional regulation.transcription factor (E2F) |