Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen06g030420 Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway. Binds DPA and RBR1 proteins. Expressed throughout the cell cycle. Abundance increased by auxin through stabilization of the protein. Elevates CDK levels and activity, even under hormone-free conditions. Promotes cell division and shortens cell doubling time, inhibits cell growth. Transgenic plants overexpressing AtE2Fa contained an increased level of AtE2Fb transcripts that is paralleled by an increase in the amount of the AtE2Fb protein, suggesting that AtE2Fb expression might actually be up-regulated by the AtE2Fa transcription factor. | E2F transcription factor 1 (E2F1) | CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding , Transcription factor E2F/dimerisation partner (TDP) , E2F Family | BEST Arabidopsis thaliana protein match is: E2F transcription factor 3 Spenn-ch06 + View
Sopen01g003300 Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway. | E2F transcription factor 3 (E2F3) | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: regulation of transcription, DNA-dependent | LOCATED IN: transcription factor complex, chloroplast | EXPRESSED IN: 19 plant structures | EXPRESSED DURING: 11 growth stages | CONTAINS InterPro DOMAIN/s: Transcription factor E2F/dimerisation partner (TDP) , Winged helix-turn-helix transcription repressor DNA-binding , E2F Family | BEST Arabidopsis thaliana protein match is: E2F transcription factor 1 Spenn-ch01 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G13290 LG-1 - View
Aethionema arabicum Aa31LG5G21150 LG-5 + View
Acer truncatum Atru.chr3.3142 chr3 + View
Acer truncatum Atru.chr8.1394 chr8 + View
Actinidia chinensis Actinidia07270 Lachesis_group13 - View
Actinidia chinensis Actinidia24238 Lachesis_group24 - View
Arabidopsis lyrata AL6G33220 scaffold_6 + View
Arabidopsis lyrata AL4G32110 scaffold_4 + View
Avicennia marina MSTRG.18784 ScioBoG_22153_HRSCAF_22259 - View
Avicennia marina MSTRG.17687 ScioBoG_19834_HRSCAF_19925 + View
Avicennia marina MSTRG.12382 ScioBoG_17730_HRSCAF_17811 - View
Aquilegia oxysepala Aqoxy4G02680 CHR04 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.Y4QQE4 K06620 - transcription factor E2F3 (E2F3) arahy.Tifrunner.gnm1.Arahy.12 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.1J1N84 PTHR12081//PTHR12081:SF47 - TRANSCRIPTION FACTOR E2F // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.08 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.UJH38K PTHR12081//PTHR12081:SF47 - TRANSCRIPTION FACTOR E2F // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.13 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.4U64XY PTHR12081//PTHR12081:SF47 - TRANSCRIPTION FACTOR E2F // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.18 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.U6ZQZC K06620 - transcription factor E2F3 (E2F3) arahy.Tifrunner.gnm1.Arahy.02 + View
Arabidopsis thaliana AT2G36010 E2F transcription factor 3 Member of the E2F transcription factors%2C (cell cycle genes)%2C key components of the cyclin D/retinoblastoma/E2F pathway. E2F transcription factor 3 (E2F3)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: transcription factor complex%2C chloroplast%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316)%2C E2F Family (InterPro:IPR015633)%3B BEST Arabidopsis thaliana protein match is: E2F transcription factor 1 (TAIR:AT5G22220.2)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). E2F transcription factor 3 (E2F3)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: transcription factor complex%2C chloroplast%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316)%2C Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C E2F Family (InterPro:IPR015633)%3B BEST Arabidopsis thaliana protein match is: E2F transcription factor 1 (TAIR:AT5G22220.2)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr2 + View
Arabidopsis thaliana AT5G22220 E2F transcription factor 1 Member of the E2F transcription factors%2C (cell cycle genes)%2C key components of the cyclin D/retinoblastoma/E2F pathway. Binds DPA and RBR1 proteins. Expressed throughout the cell cycle. Abundance increased by auxin through stabilization of the protein. Elevates CDK levels and activity%2C even under hormone-free conditions. Promotes cell division and shortens cell doubling time%2C inhibits cell growth. Transgenic plants overexpressing AtE2Fa contained an increased level of AtE2Fb transcripts that is paralleled by an increase in the amount of the AtE2Fb protein%2C suggesting that AtE2Fb expression might actually be up-regulated by the AtE2Fa transcription factor. E2F transcription factor 1 (E2F1)%3B CONTAINS InterPro DOMAIN/s: Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316)%2C Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C E2F Family (InterPro:IPR015633)%3B BEST Arabidopsis thaliana protein match is: E2F transcription factor 3 (TAIR:AT2G36010.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr5 + View
Amborella trichopoda ATR0772G011 AmTr_v1.0_scaffold00030 + View
Brassica carinata BcaC01g06597 ChrC01 - View
Brassica carinata BcaB02g09391 ChrB02 - View
Brassica carinata BcaB08g36447 ChrB08 - View
Brassica carinata BcaB01g04721 ChrB01 - View
Brassica carinata BcaC04g19559 ChrC04 + View
Brassica napus C09p54420 C09 - View
Brassica napus A10p18570 A10 - View
Brassica oleracea BolC9t58311H C9 - View
Brassica rapa BraA05t19933Z A05 - View
Brassica rapa BraA10t43937Z A10 - View
Beta vulgaris EL10Ac7g16319 K06620 - transcription factor E2F3 (E2F3) Chr7_EL10_PGA_scaffold5 + View
Camellia sinensis var. sinensis CSS0008429 PREDICTED: transcription factor E2FA isoform X2 [Vitis vinifera] Chr13 + View
Camellia sinensis var. sinensis CSS0041866 unnamed protein product [Vitis vinifera] Chr11 - View
Capsicum annuum CAN.G745.32 PGAv.1.6.scaffold745 - View
Cannabis sativa CANSAT54G1815 NC_044375.1 - View
Cannabis sativa CANSAT64G1345 NC_044379.1 - View
Cicer arietinum L. Ca_19459_v3 Ca_LG6_v3 - View
Cicer arietinum L. Ca_11718_v3 Ca_LG4_v3 + View
Corylus avellana Haze_23329 Similar to E2FB: Transcription factor E2FB (Arabidopsis thaliana OX%3D3702) 6 + View
Corylus avellana Haze_19682 Similar to E2FA: Transcription factor E2FA (Arabidopsis thaliana OX%3D3702) 10 - View
Coffea canephora Cc01_g08610 Transcription factor E2FB chr1 + View
Citrus clementina Ciclev10028409m.g scaffold_8 + View
Citrus clementina Ciclev10011632m.g scaffold_6 + View
Ceratophyllum demersum CDE02G1876 1 + View
Carpinus fangiana Cfa016670 Cfa07 - View
Carpinus fangiana Cfa009968 Cfa04 + View
Cardamine hirsuta CARHR191330 E2F transcription factor 1 Chr6 - View
Carya illinoinensis CiPaw.13G131500 Chr13 + View
Carya illinoinensis CiPaw.09G019100 K06620 - transcription factor E2F3 (E2F3) Chr09 - View
Carya illinoinensis CiPaw.10G015500 PTHR12081//PTHR12081:SF47 - TRANSCRIPTION FACTOR E2F // SUBFAMILY NOT NAMED Chr10 - View
Citrullus lanatus ClCG02G022380 Transcription factor (E2F) CG_Chr02 - View
Citrullus lanatus ClCG04G010370 Transcription factor E2F CG_Chr04 - View
Cucumis melo MELO3C014514.2 Transcription factor chr05 + View
Cucumis melo MELO3C024578.2 transcription factor E2FA-like isoform X2 chr08 + View
Corchorus olitorius COL.COLO4_22655 hypothetical protein AWUE01018017.1 - View
Carica papaya Cpa.g.sc195.40 supercontig_195 - View
Chenopodium quinoa AUR62020244 E2f2: Transcription factor E2F2 C_Quinoa_Scaffold_2465 + View
Chenopodium quinoa AUR62001537 E2FB: Transcription factor E2FB C_Quinoa_Scaffold_2716 - View
Capsella rubella Carub.0006s1996 K06620 - transcription factor E2F3 (E2F3) scaffold_6 + View
Cucumis sativus L. CsaV3_6G038510 Transcription factor chr6 - View
Cucumis sativus L. CsaV3_6G041000 Transcription factor chr6 - View
Daucus carota DCAR_010316 hypothetical protein DCARv2_Chr3 + View
Daucus carota DCAR_020719 hypothetical protein DCARv2_Chr6 - View
Daucus carota DCAR_006178 hypothetical protein DCARv2_Chr2 - View
Davidia involucrata Dinv31746 GWHABJS00000015 - View
Davidia involucrata Dinv12323 GWHABJS00000021 + View
Davidia involucrata Dinv08129 GWHABJS00000010 + View
Davidia involucrata Dinv17084 GWHABJS00000007 + View
Durio zibethinus Duzib168G1069 NW_019168159.1 - View
Durio zibethinus Duzib106G1077 NW_019168492.1 + View
Durio zibethinus Duzib128G0810 NW_019168481.1 + View
Durio zibethinus Duzib170G0364 NW_019167871.1 + View
Durio zibethinus Duzib093G1221 NW_019167937.1 + View
Durio zibethinus Duzib150G0449 NW_019167882.1 - View
Erigeron canadensis ECA238G2343 Conyza_canadensis_scaffold:6 + View
Erigeron canadensis ECA233G2821 Conyza_canadensis_scaffold:1 + View
Eucalyptus grandis Eucgr.J00539 Chr10 - View
Eucalyptus grandis Eucgr.A02602 Chr01 + View
Erythranthe guttata Migut.N02463 scaffold_14 + View
Eutrema salsugineum Thhalv10015650m.g K06620 - transcription factor E2F3 (E2F3) scaffold_2 + View
Fragaria x ananassa FAN16G3660 K06620 - transcription factor E2F3 (E2F3) Fvb3-3 - View
Fragaria x ananassa FAN05G1580 K06620 - transcription factor E2F3 (E2F3) Fvb6-3 - View
Fragaria x ananassa FAN05G1363 K06620 - transcription factor E2F3 (E2F3) Fvb6-3 - View
Fragaria x ananassa FAN21G3546 K06620 - transcription factor E2F3 (E2F3) Fvb3-2 - View
Fragaria x ananassa FAN14G5667 K06620 - transcription factor E2F3 (E2F3) Fvb6-1 + View
Fragaria x ananassa FAN25G1475 K06620 - transcription factor E2F3 (E2F3) Fvb3-1 - View
Fragaria x ananassa FAN11G1515 K06620 - transcription factor E2F3 (E2F3) Fvb3-4 - View
Fragaria x ananassa FAN02G3843 K06620 - transcription factor E2F3 (E2F3) Fvb6-4 - View
Fragaria vesca FvH4_3g25990 K06620 - transcription factor E2F3 (E2F3) Fvb3 - View
Fragaria vesca FvH4_6g19970 K06620 - transcription factor E2F3 (E2F3) Fvb6 - View
Gossypium hirsutum Gohir.D07G115600 K06620 - transcription factor E2F3 (E2F3) D07 - View
Gossypium hirsutum Gohir.D09G097600 K06620 - transcription factor E2F3 (E2F3) D09 - View
Gossypium hirsutum Gohir.A07G112100 K06620 - transcription factor E2F3 (E2F3) A07 - View
Gossypium hirsutum Gohir.A09G097800 KOG2577 - Transcription factor E2F/dimerization partner (TDP) A09 - View
Glycine max Glyma.10G078200 K06620 - transcription factor E2F3 (E2F3) Gm10 - View
Glycine max Glyma.02G198700 K06620 - transcription factor E2F3 (E2F3) Gm02 + View
Glycine max Glyma.12G093400 K06620 - transcription factor E2F3 (E2F3) Gm12 - View
Glycine max Glyma.11G180100 K06620 - transcription factor E2F3 (E2F3) Gm11 + View
Gossypium raimondii Gorai.001G123900 Chr01 - View
Gossypium raimondii Gorai.006G114300 Chr06 - View
Lupinus albus Lalb_Chr19g0136301 PTHR12081//PTHR12081:SF47 - TRANSCRIPTION FACTOR E2F // SUBFAMILY NOT NAMED Lalb_Chr19 + View
Lupinus albus Lalb_Chr25g0288081 K06620 - transcription factor E2F3 (E2F3) Lalb_Chr25 + View
Lupinus albus Lalb_Chr01g0004971 K06620 - transcription factor E2F3 (E2F3) Lalb_Chr01 - View
Lupinus albus Lalb_Chr03g0028341 K06620 - transcription factor E2F3 (E2F3) Lalb_Chr03 - View
Lotus japonicus Lj5g0016133 K06620 - transcription factor E2F3 (E2F3) chr5 + View
Lotus japonicus Lj3g0021599 K06620 - transcription factor E2F3 (E2F3) chr3 - View
Lotus japonicus Lj3g0011053 PTHR12081//PTHR12081:SF47 - TRANSCRIPTION FACTOR E2F // SUBFAMILY NOT NAMED chr3 + View
Lonicera japonica Lj1A261G28 GWHAAZE00000001 - View
Lactuca sativa Lsat_1_v5_gn_6_35080 K06620 - transcription factor E2F3 (E2F3) Lsat_1_v8_lg_6 + View
Lactuca sativa Lsat_1_v5_gn_2_55341 Lsat_1_v8_lg_2 + View
Magnolia biondii MBI17_g18934_MAGBIO AED:0.17 Chr17 - View
Malus domestica MD14G1036100 E2F transcription factor 1 Chr14 - View
Malus domestica MD03G1152700 E2F transcription factor 1 Chr03 - View
Malus domestica MD12G1037100 E2F transcription factor 1 Chr12 - View
Manihot esculenta Manes.04G000400 Chromosome04 + View
Manihot esculenta Manes.08G031600 Chromosome08 - View
Manihot esculenta Manes.11G165300 Chromosome11 - View
Medicago truncatula Medtr4g052000 E2F transcription factor chr4 + View
Nelumbo nucifera Nn6g34753 chr6 + View
Nicotiana tabacum Nitab4.5_0001135g0200 Transcription factor E2F/dimerisation partner (TDP), E2F Family, Winged helix-turn-helix DNA-binding domain Nitab4.5_0001135 - View
Nicotiana tabacum Nitab4.5_0000893g0030 Transcription factor E2F/dimerisation partner (TDP), Winged helix-turn-helix DNA-binding domain, E2F Family Nitab4.5_0000893 - View
Olea europaea Oeu051598.2 chr1 + View
Olea europaea Oeu009054.1 chr16 + View
Oryza sativa ssp. japonica Os02g0537500 E2F transcription factor chr02 - View
Oryza sativa ssp. japonica Os12g0158800 Similar to E2F homolog (Fragment). chr12 - View
Oryza sativa ssp. japonica Os04g0416100 Similar to Transcription factor E2F1 (E2F-1) (Fragment). chr04 - View
Petunia axillaris Peaxi162Scf00224g00820 E2F transcription factor 1 Peaxi162Scf00224 - View
Punica granatum PGR119G0771 NC_045132.1 + View
Punica granatum PGR102G1471 NC_045129.1 + View
Prunus persica Prupe.7G098100 K06620 - transcription factor E2F3 (E2F3) Pp07 + View
Prunus persica Prupe.6G139100 PTHR11246//PTHR11246:SF14 - PRE-MRNA SPLICING FACTOR // SUBFAMILY NOT NAMED Pp06 - View
Pisum sativum Psat7g187080 E2F transcription factor CC-MB domain chr7LG7 - View
Papaver somniferum PSO339G3478 NC_039366.1 + View
Papaver somniferum PSO384G4180 NC_039368.1 - View
Populus trichocarpa Potri.016G072300 K06620 - transcription factor E2F3 (E2F3) Chr16 + View
Populus trichocarpa Potri.006G205100 K06620 - transcription factor E2F3 (E2F3) Chr06 + View
Populus trichocarpa Potri.004G200800 K06620 - transcription factor E2F3 (E2F3) Chr04 - View
Populus trichocarpa Potri.009G161900 K06620 - transcription factor E2F3 (E2F3) Chr09 - View
Phaseolus vulgaris Phvul.011G097700 K06620 - transcription factor E2F3 (E2F3) Chr11 - View
Phaseolus vulgaris Phvul.007G269500 K06620 - transcription factor E2F3 (E2F3) Chr07 + View
Quercus lobata QL07p037461 7 + View
Quercus lobata QL01p011359 1 + View
Rosa chinensis RcHm_v2.0_Chr5g0047281 RcHm_v2.0_Chr5 - View
Rosa chinensis RcHm_v2.0_Chr3g0475421 RcHm_v2.0_Chr3 - View
Rhododendron simsii Rhsim03G0066900 chr03 + View
Rhododendron simsii Rhsim01G0202000 chr01 + View
Striga asiatica SGA_v2.0_scaffold177G39470 scaffold177 - View
Striga asiatica SGA_v2.0_scaffold7G03982 scaffold7 + View
Salvia bowleyana SalBow6G4159 GWHASIU00000002 + View
Salix brachista Sabra09G0126600 GWHAAZH00000009 - View
Salix brachista Sabra04G0135900 GWHAAZH00000004 - View
Salix brachista Sabra16G0075200 GWHAAZH00000016 + View
Salix brachista Sabra06G0158100 GWHAAZH00000006 + View
Simmondsia chinensis Sc21g0006880 GWHAASQ00000021 + View
Simmondsia chinensis Sc12g0004780 GWHAASQ00000012 - View
Sechium edule Sed0010210 LG14 + View
Sechium edule Sed0009146 LG01 - View
Solanum lycopersicum Solyc01g007760.3 Transcription factor E2FA (AHRD V3.3 *** A0A2G2XS87_CAPBA) SL4.0ch01 + View
Solanum lycopersicum Solyc11g068800.2 Transcription factor E2FB (AHRD V3.3 *** A0A2G2YH44_CAPAN) SL4.0ch11 - View
Solanum lycopersicum Solyc06g074010.3 Transcription factor E2FB (AHRD V3.3 *** A0A1U8H3C7_CAPAN) SL4.0ch06 + View
Schrenkiella parvula Sp6g23010 K06620 - transcription factor E2F3 (E2F3) ch6-6 - View
Solanum tuberosum PGSC0003DMG402005932 Transcription factor ST4.03ch06 + View
Solanum tuberosum PGSC0003DMG400019629 Transcription factor ST4.03ch11 - View
Selenicereus undatus Hund20942 Scaffold_33673 - View
Selenicereus undatus Hund18791 Scaffold_33675 - View
Trochodendron aralioides TAR623G1036 group7 + View
Trochodendron aralioides TAR633G0387 group2 + View
Theobroma cacao Thecc.09G275800 Transcription factor E2F Chromosome_9 + View
Theobroma cacao Thecc.05G101100 E2F transcription factor 3 Chromosome_5 - View
Tarenaya hassleriana THA.LOC104799561 transcription factor E2FB-like isoform X1 NW_010968505.1 - View
Tarenaya hassleriana THA.LOC104826440 transcription factor E2FB-like isoform X1 NW_010967707.1 - View
Trifolium pratense TPR.G4664 Tp57577_TGAC_v2_LG4 + View
Tripterygium wilfordii TWI53G0346 NC_052244.1 + View
Tripterygium wilfordii TWI74G0760 NC_052234.1 - View
Tripterygium wilfordii TWI79G1010 NC_052238.1 - View
Tripterygium wilfordii TWI31G1092 NC_052233.1 + View
Vigna mungo VMungo1127G1029 CM024076.1 - View
Vitis vinifera GSVIVG01033931001 chr8 + View
Vitis vinifera GSVIVG01036059001 chr6 - View
Zea mays Zm00001eb243000 Zm00001e014746 Transcription factor E2FB 5 - View
Zea mays Zm00001eb083590 Zm00001e116738 Transcription factor E2FB 2 + View