Gene: Sopen07g015370
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen07g015370
- Transcript Identifier Sopen07g015370.1
- Gene Type Coding gene
- Location Spenn-ch07 : 42703415-42732014 : negative
Gene Family Information
- ID HOM05D000004
- #Genes/#Species 19584/91
- Phylogenetic origin
- ID ORTHO05D000002
- #Genes/#Species 15655/89
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen07g015370.1
Descriptions
- Description embryo defective 1967 (emb1967) | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: embryo development ending in seed dormancy | LOCATED IN: cellular_component unknown | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: SMAD/FHA domain , Forkhead-associated (FHA) domain | BEST Arabidopsis thaliana protein match is: Forkhead-associated (FHA) domain-containing protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0002151 | IEA | InterPro | G-quadruplex RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0031011 | IEA | InterPro | Ino80 complex | |
| GO:0071339 | IEA | InterPro | MLL1 complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036397 | Ribonuclease H superfamily |
| IPR041373 | Reverse transcriptase, RNase H-like domain |
| IPR041588 | Integrase zinc-binding domain |
| IPR000253 | Forkhead-associated (FHA) domain |
| IPR001878 | Zinc finger, CCHC-type |
| IPR008984 | SMAD/FHA domain superfamily |
| IPR005162 | Retrotransposon gag domain |
| IPR016197 | Chromo-like domain superfamily |
| IPR043128 | Reverse transcriptase/Diguanylate cyclase domain |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR037912 | Microspherule protein 1 |
| IPR043502 | DNA/RNA polymerase superfamily |
| IPR000477 | Reverse transcriptase domain |
| IPR025999 | Microspherule protein, N-terminal domain |
| IPR021109 | Aspartic peptidase domain superfamily |
| IPR036875 | Zinc finger, CCHC-type superfamily |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |