Gene: Pp3c1_35770
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c1_35770
- Transcript Identifier Pp3c1_35770V3.7
- Gene Type Coding gene
- Location Chr01 : 25062315-25069350 : positive
Gene Family Information
- ID HOM05D000234
- #Genes/#Species 1784/99
- Phylogenetic origin
- ID ORTHO05D000335
- #Genes/#Species 1094/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name Pp3c1_35770V3.7
- pacid 32967944
- alias Phpat.001G144700
- alias Pp1s28_182V6
- alias Phypa_205541
- uniprot A0A2K1LB40
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0033169 | ISO | PLAZA Integrative Orthology | histone H3-K9 demethylation | Os03g0800200 |
| GO:0016441 | ISO | PLAZA Integrative Orthology | posttranscriptional gene silencing | AT1G48410 |
| GO:0010305 | ISO | PLAZA Integrative Orthology | leaf vascular tissue pattern formation | AT1G48410 |
| GO:0016246 | ISO | PLAZA Integrative Orthology | RNA interference | AT1G69440 |
| GO:0010586 | ISO | PLAZA Integrative Orthology | miRNA metabolic process | AT5G43810 |
| GO:0010267 | ISO | PLAZA Integrative Orthology | production of ta-siRNAs involved in RNA interference | AT1G69440 |
| GO:1900111 | ISO | PLAZA Integrative Orthology | positive regulation of histone H3-K9 dimethylation | Os03g0800200 |
| GO:1903343 | ISO | PLAZA Integrative Orthology | positive regulation of meiotic DNA double-strand break formation | Os03g0800200 |
| GO:0009850 | ISO | PLAZA Integrative Orthology | auxin metabolic process | AT1G48410 |
| GO:0009934 | ISO | PLAZA Integrative Orthology | regulation of meristem structural organization | AT5G43810 |
| GO:0009615 | ISO | PLAZA Integrative Orthology | response to virus | AT2G27880 |
| GO:0009733 | ISO | PLAZA Integrative Orthology | response to auxin | Solyc01g010970.3 |
| GO:0010589 | ISO | PLAZA Integrative Orthology | leaf proximal/distal pattern formation | AT1G48410 |
| GO:2000616 | ISO | PLAZA Integrative Orthology | negative regulation of histone H3-K9 acetylation | Os03g0800200 |
| GO:0035019 | ISO | PLAZA Integrative Orthology | somatic stem cell population maintenance | AT5G43810 |
| GO:0010599 | ISO | PLAZA Integrative Orthology | production of lsiRNA involved in RNA interference | AT1G69440 |
| GO:1902183 | ISO | PLAZA Integrative Orthology | regulation of shoot apical meristem development | AT5G43810 |
| GO:0010050 | ISO | PLAZA Integrative Orthology | vegetative phase change | AT1G69440 |
| GO:0061866 | ISO | PLAZA Integrative Orthology | negative regulation of histone H3-S10 phosphorylation | Os03g0800200 |
| GO:0009616 | ISO | PLAZA Integrative Orthology | RNAi-mediated antiviral immune response | AT1G48410 |
| GO:0048830 | ISO | PLAZA Integrative Orthology | adventitious root development | AT1G48410 |
| GO:0045087 | ISO | PLAZA Integrative Orthology | innate immune response | AT1G48410 |
| GO:0030154 | ISO | PLAZA Integrative Orthology | cell differentiation | AT1G48410 |
| GO:0019048 | ISO | PLAZA Integrative Orthology | modulation by virus of host process | AT1G31280 |
| GO:0031047 | IEA | GOA Database | gene silencing by RNA | |
| GO:0040034 | ISO | PLAZA Integrative Orthology | regulation of development, heterochronic | AT1G69440 |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT1G48410 |
| GO:0009955 | ISO | PLAZA Integrative Orthology | adaxial/abaxial pattern specification | AT1G48410 |
| GO:0010218 | ISO | PLAZA Integrative Orthology | response to far red light | AT1G48410 |
| GO:0048366 | ISO | PLAZA Integrative Orthology | leaf development | Os06g0597400 |
| GO:0055046 | ISO | PLAZA Integrative Orthology | microgametogenesis | Os03g0800200 |
| GO:0051607 | ISO | PLAZA Integrative Orthology | defense response to virus | AT1G48410 |
| GO:0019827 | ISO | PLAZA Integrative Orthology | stem cell population maintenance | Os06g0597400 |
| GO:0035195 | ISO | PLAZA Integrative Orthology | gene silencing by miRNA | Solyc02g069270.2 |
| GO:0007143 | ISO | PLAZA Integrative Orthology | female meiotic nuclear division | Os03g0800200 |
| GO:0035196 | ISO | PLAZA Integrative Orthology | production of miRNAs involved in gene silencing by miRNA | AT1G69440 |
| GO:0009561 | ISO | PLAZA Integrative Orthology | megagametogenesis | Os03g0800200 |
| GO:0007140 | ISO | PLAZA Integrative Orthology | male meiotic nuclear division | Os03g0800200 |
| GO:0042742 | ISO | PLAZA Integrative Orthology | defense response to bacterium | AT1G31280 |
| GO:0009965 | ISO | PLAZA Integrative Orthology | leaf morphogenesis | AT1G48410 |
| GO:0098542 | ISO | PLAZA Integrative Orthology | defense response to other organism | AT2G27880 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004521 | ISO | PLAZA Integrative Orthology | endoribonuclease activity | AT1G48410 |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003723 | ISO | PLAZA Integrative Orthology | RNA binding | AT2G27880 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT1G48410 |
| GO:0035198 | ISO | PLAZA Integrative Orthology | miRNA binding | AT1G48410 |
| GO:0035197 | ISO | PLAZA Integrative Orthology | siRNA binding | AT1G48410 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | Os03g0800200 |
| GO:0005731 | ISO | PLAZA Integrative Orthology | nucleolus organizer region | Os03g0800200 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT1G48410 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G48410 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G48410 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036397 | Ribonuclease H superfamily |
| IPR003165 | Piwi domain |
| IPR032472 | Argonaute linker 2 domain |
| IPR032473 | Protein argonaute, Mid domain |
| IPR014811 | Argonaute, linker 1 domain |
| IPR036085 | PAZ domain superfamily |
| IPR003100 | PAZ domain |
| IPR032474 | Protein argonaute, N-terminal |
| IPR012337 | Ribonuclease H-like superfamily |
| Mapman id | Description |
|---|---|
| 16.9.2.7 | RNA processing.mRNA silencing.miRNA pathway.miRNA recruiting factor (AGO1/AGO10) |