Gene: AT2G27880

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G27880
  • Transcript Identifier AT2G27880.1
  • Gene Type Coding gene
  • Location Chr2 : 11871488-11876712 : positive

Gene Family Information

  • ID HOM05D000234
  • #Genes/#Species 1784/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G27880.1
  • symbol AGO5
  • Alias AtAGO5
  • full_name ARGONAUTE 5
  • uniprot Q9SJK3

Descriptions

  • Description Argonaute family protein
  • Computational description ARGONAUTE 5 (AGO5); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Argonaute/Dicer protein, PAZ (InterPro:IPR003100); BEST Arabidopsis thaliana protein match is: Stabilizer of iron transporter SufD / Polynucleotidyl transferase (TAIR:AT1G48410.1); Has 2539 Blast hits to 2399 proteins in 280 species: Archae - 0; Bacteria - 80; Metazoa - 1295; Fungi - 341; Plants - 581; Viruses - 6; Other Eukaryotes - 236 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0061866
ISO
PLAZA Integrative Orthologynegative regulation of histone H3-S10 phosphorylation Os03g0800200
GO:0033169
ISO
PLAZA Integrative Orthologyhistone H3-K9 demethylation Os03g0800200
GO:0055046
ISO
PLAZA Integrative Orthologymicrogametogenesis Os03g0800200
GO:2000616
ISO
PLAZA Integrative Orthologynegative regulation of histone H3-K9 acetylation Os03g0800200
GO:1903343
ISO
PLAZA Integrative Orthologypositive regulation of meiotic DNA double-strand break formation Os03g0800200
GO:1900111
ISO
PLAZA Integrative Orthologypositive regulation of histone H3-K9 dimethylation Os03g0800200
GO:0007140
ISO
PLAZA Integrative Orthologymale meiotic nuclear division Os03g0800200
GO:0009561
ISO
PLAZA Integrative Orthologymegagametogenesis Os03g0800200
GO:0007143
ISO
PLAZA Integrative Orthologyfemale meiotic nuclear division Os03g0800200
GO:0031047
IEA
GOA Databasegene silencing by RNA
GO:0006952
IEA
GOA Databasedefense response
GO:0006417
IEA
GOA Databaseregulation of translation
GO:0098542
IEP
Gene Ontologydefense response to other organism1
GO:0009616
IGI
Gene OntologyRNAi-mediated antiviral immune response1
GO:0009615
IEP
Gene Ontologyresponse to virus1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
IEA
InterProprotein binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IPI
Gene OntologyRNA binding1
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005731
ISO
PLAZA Integrative Orthologynucleolus organizer region Os03g0800200
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus Os03g0800200
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005829
IDA
Gene Ontologycytosol1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012337 Ribonuclease H-like superfamily
IPR003165 Piwi domain
IPR032474 Protein argonaute, N-terminal
IPR014811 Argonaute, linker 1 domain
IPR036397 Ribonuclease H superfamily
IPR032472 Argonaute linker 2 domain
IPR036085 PAZ domain superfamily
IPR003100 PAZ domain
IPR032473 Protein argonaute, Mid domain
Mapman id Description
35.1 not assigned.annotated