Gene: PGSC0003DMG400030733

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400030733
  • Transcript Identifier PGSC0003DMT400078978
  • Gene Type Coding gene
  • Location ST4.03ch07 : 3145571-3150959 : positive

Gene Family Information

  • ID HOM05D000835
  • #Genes/#Species 712/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37433650
  • id PGSC0003DMG400030733.v4.03
  • uniprot M1D118

Descriptions

  • Description 116 kD U5 small nuclear ribonucleoprotein component
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045694
ISO
PLAZA Integrative Orthologyregulation of embryo sac egg cell differentiation AT1G06220
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT1G56070
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT1G56070
GO:0048437
ISO
PLAZA Integrative Orthologyfloral organ development AT1G06220
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT1G06220
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G56070
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G06220
GO:0005525
IEA
GOA DatabaseGTP binding
GO:0005525
IEA
InterProGTP binding
GO:0030623
IBA
GOA DatabaseU5 snRNA binding
GO:0003924
IBA
IEA
GOA DatabaseGTPase activity
GO:0003924
IEA
InterProGTPase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT1G06220
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G56070
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT1G06220
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT1G56070
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT1G56070
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT1G56070
GO:0005774
ISO
PLAZA Integrative Orthologyvacuolar membrane AT1G56070
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G56070
GO:1990904
IBA
GOA Databaseribonucleoprotein complex
GO:0046540
IBA
GOA DatabaseU4/U6 x U5 tri-snRNP complex
GO:0071007
IBA
GOA DatabaseU2-type catalytic step 2 spliceosome
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR005517 Translation elongation factor EFG/EF2, domain IV
IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
IPR035647 EF-G domain III/V-like
IPR000640 Elongation factor EFG, domain V-like
IPR000795 Translational (tr)-type GTP-binding domain
IPR031950 116kDa U5 small nuclear ribonucleoprotein component, N-terminal
IPR005225 Small GTP-binding protein domain
IPR044121 Snu114, GTP-binding domain
IPR035655 116kDa U5 small nuclear ribonucleoprotein component, C-terminal
IPR009000 Translation protein, beta-barrel domain superfamily
IPR004161 Translation elongation factor EFTu-like, domain 2
Mapman id Description
16.2.1.4.2 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (SNU114/U5-116kDa)