Gene: AT1G56070

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G56070
  • Transcript Identifier AT1G56070.1
  • Gene Type Coding gene
  • Location Chr1 : 20968245-20971077 : negative

Gene Family Information

  • ID HOM05D000835
  • #Genes/#Species 712/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G56070.1
  • symbol LOS1
  • full_name LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1
  • uniprot Q9ASR1

Descriptions

  • Description Ribosomal protein S5/Elongation factor G/III/V family protein
  • Computational description LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1 (LOS1); FUNCTIONS IN: translation factor activity, nucleic acid binding, copper ion binding, translation elongation factor activity; INVOLVED IN: response to cold; LOCATED IN: cytosol, nucleolus, chloroplast, plasma membrane, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT3G12915.1); Has 64297 Blast hits to 57476 proteins in 4618 species: Archae - 1324; Bacteria - 41101; Metazoa - 3172; Fungi - 1934; Plants - 1269; Viruses - 1; Other Eukaryotes - 15496 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006414
IBA
IEA
Gene Ontologytranslational elongation1
GO:0006412
IEA
GOA Databasetranslation
GO:0009409
IMP
Gene Ontologyresponse to cold2
GO:0009631
IMP
Gene Ontologycold acclimation2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003746
IEA
GOA Databasetranslation elongation factor activity
GO:0003746
IBA
Gene Ontologytranslation elongation factor activity1
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0005525
IEA
GOA DatabaseGTP binding
GO:0005525
IEA
InterProGTP binding
GO:0003924
IEA
GOA DatabaseGTPase activity
GO:0003924
IBA
Gene OntologyGTPase activity1
GO:0003924
IEA
InterProGTPase activity
GO:0005507
HDA
Gene Ontologycopper ion binding3
GO:0003729
IDA, HDA
Gene OntologymRNA binding4 5
GO:0043022
IBA
Gene Ontologyribosome binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
HDA
IBA
Gene Ontologycytosol1 6
GO:1990904
IBA
Gene Ontologyribonucleoprotein complex1
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005774
IDA
GOA Databasevacuolar membrane
GO:0005730
IDA
GOA Databasenucleolus
GO:0005730
HDA
Gene Ontologynucleolus7
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0005886
HDA
Gene Ontologyplasma membrane8
GO:0009507
IDA
GOA Databasechloroplast
GO:0009507
HDA
Gene Ontologychloroplast9
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma10
GO:0000325
HDA
Gene Ontologyplant-type vacuole11
GO:0005794
RCA
Gene OntologyGolgi apparatus12
GO:0005634
HDA
Gene Ontologynucleus13

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000795 Translational (tr)-type GTP-binding domain
IPR000640 Elongation factor EFG, domain V-like
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR035647 EF-G domain III/V-like
IPR009000 Translation protein, beta-barrel domain superfamily
IPR005225 Small GTP-binding protein domain
IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
IPR005517 Translation elongation factor EFG/EF2, domain IV
IPR004161 Translation elongation factor EFTu-like, domain 2
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR041095 Elongation Factor G, domain II
Mapman id Description
17.5.2.1 Protein biosynthesis.translation elongation.eEF2 mRNA-translocation factor activity.mRNA-translocation factor (eEF2)