Gene: AT1G06220

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G06220
  • Transcript Identifier AT1G06220.1
  • Gene Type Coding gene
  • Location Chr1 : 1900524-1904583 : positive

Gene Family Information

  • ID HOM05D000835
  • #Genes/#Species 712/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G06220.1
  • symbol MEE5
  • Alias CLO,CLOTHO,GFA1,GAMETOPHYTE FACTOR 1
  • full_name MATERNAL EFFECT EMBRYO ARREST 5
  • uniprot Q9LNC5

Descriptions

  • Description Ribosomal protein S5/Elongation factor G/III/V family protein
  • Computational description MATERNAL EFFECT EMBRYO ARREST 5 (MEE5); FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation elongation factor activity, GTPase activity; INVOLVED IN: regulation of embryo sac egg cell differentiation, embryo development ending in seed dormancy; LOCATED IN: nuclear speck, cell wall, plasma membrane; EXPRESSED IN: whole plant, cultured cell; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT5G25230.1); Has 61019 Blast hits to 57504 proteins in 4658 species: Archae - 1314; Bacteria - 38464; Metazoa - 2393; Fungi - 1714; Plants - 1333; Viruses - 1; Other Eukaryotes - 15800 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0000398
IBA
Gene OntologymRNA splicing, via spliceosome1
GO:0048437
IMP
Gene Ontologyfloral organ development2
GO:0045694
IMP
Gene Ontologyregulation of embryo sac egg cell differentiation3
GO:0009793
IMP
Gene Ontologyembryo development ending in seed dormancy4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003924
IEA
GOA DatabaseGTPase activity
GO:0003924
IBA
Gene OntologyGTPase activity1
GO:0003924
IEA
InterProGTPase activity
GO:0005525
IEA
GOA DatabaseGTP binding
GO:0005525
IEA
InterProGTP binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0030623
IBA
Gene OntologyU5 snRNA binding1
GO:0005515
IPI
Gene Ontologyprotein binding5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1990904
IBA
Gene Ontologyribonucleoprotein complex1
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G25230
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT5G25230
GO:0005634
IEA
GOA Databasenucleus
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0005618
IDA
GOA Databasecell wall
GO:0016607
IEA
GOA Databasenuclear speck
GO:0016607
IDA
Gene Ontologynuclear speck3
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005829
IBA, RCA
Gene Ontologycytosol1 6
GO:0071007
IBA
Gene OntologyU2-type catalytic step 2 spliceosome1
GO:0046540
IBA
Gene OntologyU4/U6 x U5 tri-snRNP complex1
GO:0005576
HDA
Gene Ontologyextracellular region7
GO:0009505
HDA
Gene Ontologyplant-type cell wall8

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005517 Translation elongation factor EFG/EF2, domain IV
IPR035647 EF-G domain III/V-like
IPR000640 Elongation factor EFG, domain V-like
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR031950 116kDa U5 small nuclear ribonucleoprotein component, N-terminal
IPR004161 Translation elongation factor EFTu-like, domain 2
IPR005225 Small GTP-binding protein domain
IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
IPR000795 Translational (tr)-type GTP-binding domain
IPR035655 116kDa U5 small nuclear ribonucleoprotein component, C-terminal
IPR044121 Snu114, GTP-binding domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR009000 Translation protein, beta-barrel domain superfamily
Mapman id Description
16.2.1.4.2 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (SNU114/U5-116kDa)