Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr7.2523 chr7 - View
Actinidia chinensis Actinidia13197 Lachesis_group18 + View
Actinidia chinensis Actinidia22307 Lachesis_group23 - View
Arabidopsis lyrata AL7G19990 scaffold_7 - View
Avicennia marina MSTRG.11592 ScioBoG_17730_HRSCAF_17811 + View
Amaranthus hybridus Ah.16g104930 AmaHy_arrow1_Scaffold_16 - View
Arabidopsis thaliana AT2G25170 chromatin remodeling factor CHD3 (PICKLE) Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1. Is an extragenic suppressor of slr2 (SSL2). Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1. It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis. PICKLE (PKL)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C Protein of unknown function DUF1086 (InterPro:IPR009462)%2C Chromo domain (InterPro:IPR000953)%2C SNF2-related (InterPro:IPR000330)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C Chromo domain-like (InterPro:IPR016197)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C Zinc finger%2C PHD-finger (InterPro:IPR019787)%3B BEST Arabidopsis thaliana protein match is: chromatin remodeling factor%2C putative (TAIR:AT4G31900.1)%3B Has 20234 Blast hits to 17178 proteins in 1958 species: Archae - 161%3B Bacteria - 5176%3B Metazoa - 5098%3B Fungi - 4334%3B Plants - 1876%3B Viruses - 134%3B Other Eukaryotes - 3455 (source: NCBI BLink). Chr2 + View
Arabidopsis thaliana AT4G31900 chromatin remodeling factor PICKLE RELATED 2 (PKR2)%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: chromatin assembly or disassembly%3B LOCATED IN: chromatin%2C nucleus%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463)%2C Protein of unknown function DUF1086 (InterPro:IPR009462)%2C Chromo domain (InterPro:IPR000953)%2C SNF2-related (InterPro:IPR000330)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C Chromo domain-like (InterPro:IPR016197)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1)%3B Has 19383 Blast hits to 16625 proteins in 2121 species: Archae - 158%3B Bacteria - 5872%3B Metazoa - 3841%3B Fungi - 4162%3B Plants - 1629%3B Viruses - 186%3B Other Eukaryotes - 3535 (source: NCBI BLink). PICKLE RELATED 2 (PKR2)%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: chromatin assembly or disassembly%3B LOCATED IN: chromatin%2C nucleus%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C Protein of unknown function DUF1086 (InterPro:IPR009462)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C Chromo domain (InterPro:IPR000953)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1). Chr4 + View
Brassica carinata BcaC09g51981 ChrC09 + View
Brassica napus C07p58980 C07 + View
Brassica napus C01p06980 C01 - View
Brassica napus A01p06320 A01 - View
Brassica napus A03p61110 A03 + View
Brassica oleracea BolC1t00694H C1 - View
Brassica oleracea BolC7t46345H C7 + View
Brassica rapa BraA03t15150Z A03 + View
Beta vulgaris EL10Ac2g04134 K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) Chr2_EL10_PGA_scaffold6 + View
Camellia sinensis var. sinensis CSS0003293 PREDICTED: CHD3-type chromatin-remodeling factor PICKLE [Vitis vinifera] Chr12 + View
Capsicum annuum CAN.G199.65 PGAv.1.6.scaffold199 + View
Cicer arietinum L. Ca_13055_v3 Ca_LG4_v3 - View
Cicer arietinum L. Ca_15766_v3 Ca_LG5_v3 - View
Corylus avellana Haze_21436 Similar to PKL: CHD3-type chromatin-remodeling factor PICKLE (Arabidopsis thaliana OX%3D3702) 3 + View
Coffea canephora Cc08_g00060 CHD3-type chromatin-remodeling factor PICKLE chr8 + View
Citrus clementina Ciclev10010331m.g scaffold_1 + View
Carya illinoinensis CiPaw.08G007100 K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) Chr08 + View
Citrullus lanatus ClCG05G016460 Chromodomain helicase DNA binding protein, putative CG_Chr05 + View
Cucumis melo MELO3C016973.2 CHD3-type chromatin-remodeling factor PICKLE chr07 - View
Carica papaya Cpa.g.sc127.15 supercontig_127 - View
Chenopodium quinoa AUR62012463 PKL: CHD3-type chromatin-remodeling factor PICKLE C_Quinoa_Scaffold_1995 - View
Chenopodium quinoa AUR62031587 PKL: CHD3-type chromatin-remodeling factor PICKLE C_Quinoa_Scaffold_1206 - View
Capsella rubella Carub.0004s0475 scaffold_4 + View
Capsella rubella Carub.0007s0864 K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) scaffold_7 - View
Cucumis sativus L. CsaV3_4G036700 Chromodomain helicase DNA binding protein, putative chr4 + View
Davidia involucrata Dinv16472 GWHABJS00000017 - View
Durio zibethinus Duzib150G0247 NW_019167882.1 + View
Eutrema salsugineum Thhalv10027006m.g K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) scaffold_1 - View
Gossypium hirsutum Gohir.A07G031300 K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) A07 - View
Gossypium hirsutum Gohir.D07G035100 PF00271//PF00385//PF00628//PF04851//PF06461//PF06465//PF08074 - Helicase conserved C-terminal domain (Helicase_C) // Chromo (CHRromatin Organisation MOdifier) domain (Chromo) // PHD-finger (PHD) // Type III restriction enzyme, res subunit (ResIII) // Domain of Unknown Function (DUF1086) (DUF1086) // Domain of Unknown Function (DUF1087) (DUF1087) // CHDCT2 (NUC038) domain (CHDCT2) D07 - View
Gossypium hirsutum Gohir.D13G187900 PTHR10799//PTHR10799:SF741 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // HELICASE PROTEIN MOM1-RELATED D13 + View
Glycine max Glyma.17G217300 PTHR10799:SF788 - CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN MI-2 HOMOLOG Gm17 - View
Glycine max Glyma.04G062400 K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) Gm04 + View
Glycine max Glyma.06G063400 K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) Gm06 + View
Gossypium raimondii Gorai.001G036900 Chr01 - View
Lupinus albus Lalb_Chr24g0402041 K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) Lalb_Chr24 + View
Lupinus albus Lalb_Chr08g0244361 K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) Lalb_Chr08 - View
Lupinus albus Lalb_Chr23g0268291 K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) Lalb_Chr23 + View
Lotus japonicus Lj1g0020904 K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) chr1 - View
Lonicera japonica Lj7A730T43 GWHAAZE00000007 - View
Malus domestica MD15G1037700 chromatin remodeling factor CHD3 (PICKLE) Chr15 - View
Manihot esculenta Manes.16G127700 Chromosome16 - View
Manihot esculenta Manes.03G010400 Chromosome03 + View
Medicago truncatula Medtr3g106210 CHD3-type chromatin-remodeling factor pickle protein chr3 + View
Medicago truncatula Medtr1g013190 chromatin remodeling factor CHD3 (pickle) chr1 - View
Nelumbo nucifera Nn2g12306 chr2 - View
Nicotiana tabacum Nitab4.5_0002503g0110 CHD, C-terminal 2, SNF2-related, P-loop containing nucleoside triphosphate hydrolase, Zinc finger, PHD-finger, Helicase, superfamily 1/2, ATP-binding domain, Domain of unknown function DUF1086, Zinc finger, RING/FYVE/PHD-type, Chromo domain/shadow, Chromo domain-like, Zinc finger, PHD-type, Homeodomain-like, Zinc finger, FYVE/PHD-type, Chromo domain, Rubredoxin-like domain, Domain of unknown function DUF1087, Zinc finger, PHD-type, conserved site Nitab4.5_0002503 - View
Nicotiana tabacum Nitab4.5_0003811g0020 SNF2-related, Zinc finger, RING/FYVE/PHD-type, Zinc finger, FYVE/PHD-type, Chromo domain/shadow, Helicase, superfamily 1/2, ATP-binding domain, Zinc finger, PHD-type, conserved site, Chromo domain-like, Zinc finger, PHD-finger, CHD, C-terminal 2, Domain of unknown function DUF1086, P-loop containing nucleoside triphosphate hydrolase, Rubredoxin-like domain, Homeodomain-like, Zinc finger, PHD-type, Helicase, C-terminal, Chromo domain Nitab4.5_0003811 + View
Olea europaea Oeu042797.1 chr7 + View
Olea europaea Oeu056768.1 chr13 + View
Petunia axillaris Peaxi162Scf00430g00415 Chromodomain-helicase-DNA-binding protein 4 Peaxi162Scf00430 - View
Punica granatum PGR044G1954 NC_045134.1 - View
Populus trichocarpa Potri.006G262200 K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) Chr06 - View
Populus trichocarpa Potri.018G021100 K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) Chr18 + View
Phaseolus vulgaris Phvul.001G046100 K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) Chr01 + View
Phaseolus vulgaris Phvul.009G088700 Chr09 + View
Quercus lobata QL02p019684 CM012294 + View
Rosa chinensis RcHm_v2.0_Chr6g0299661 RcHm_v2.0_Chr6 + View
Rhododendron simsii Rhsim07G0163100 chr07 - View
Salix brachista Sabra06G0204500 GWHAAZH00000006 - View
Salix brachista Sabra18G0023400 GWHAAZH00000018 + View
Simmondsia chinensis Sc09g0010480 GWHAASQ00000009 - View
Sechium edule Sed0013682 LG13 + View
Sechium edule Sed0022321 LG05 - View
Schrenkiella parvula Sp7g29720 K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) ch7-5 + View
Schrenkiella parvula Sp4g04150 K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) ch4-2 + View
Solanum pennellii Sopen06g024260 Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1. Is an extragenic suppressor of slr2 (SSL2). Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1. It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis. | PICKLE (PKL) | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 , Zinc finger, RING-type , Zinc finger, PHD-type, conserved site , Zinc finger, PHD-type , Protein of unknown function DUF1086 , Chromo domain , SNF2-related , DEAD-like helicase, N-terminal , Chromo domain-like , DNA/RNA helicase, C-terminal , Zinc finger, FYVE/PHD-type , Helicase, superfamily 1/2, ATP-binding domain , Zinc finger, PHD-finger | BEST Arabidopsis thaliana protein match is: chromatin remodeling factor, putative Spenn-ch06 + View
Solanum tuberosum PGSC0003DMG400026094 Conserved gene of unknown function ST4.03ch06 - View
Theobroma cacao Thecc.09G017400 Chromatin remodeling factor CHD3 Chromosome_9 + View
Tarenaya hassleriana THA.LOC104803854 CHD3-type chromatin-remodeling factor PICKLE-like NW_010971389.1 - View
Tarenaya hassleriana THA.LOC104803635 CHD3-type chromatin-remodeling factor PICKLE-like NW_010971389.1 + View
Trifolium pratense TPR.G3131 Tp57577_TGAC_v2_LG7 - View
Tripterygium wilfordii TWI32G0850 NC_052254.1 - View
Tripterygium wilfordii TWI63G1656 NC_052240.1 - View
Vaccinium macrocarpon vmacro05139 Similar to PKL: CHD3-type chromatin-remodeling factor PICKLE (Arabidopsis thaliana OX%3D3702) chr12_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0647G2573 CM024073.1 + View
Vigna mungo VMungo1309G2115 CM024072.1 - View
Vitis vinifera GSVIVG01035901001 chr4 + View