Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold44G16680 scaffold44 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr12.70 chr12 + View
Actinidia chinensis Actinidia13949 Lachesis_group21 + View
Actinidia chinensis Actinidia33917 Lachesis_group3 + View
Actinidia chinensis Actinidia00957 Lachesis_group3 + View
Arabidopsis lyrata AL3G22660 scaffold_3 - View
Avicennia marina MSTRG.8342 ScioBoG_102841_HRSCAF_103114 + View
Amaranthus hybridus Ah.10g036630 Clathrin heavy chain 2 AmaHy_arrow1_Scaffold_10 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.S3M94I K04646 - clathrin heavy chain (CLTC) arahy.Tifrunner.gnm1.Arahy.17 - View
Arabidopsis thaliana AT3G11130 Clathrin, heavy chain Clathrin%2C heavy chain%3B FUNCTIONS IN: structural molecule activity%2C binding%3B INVOLVED IN: intracellular protein transport%2C vesicle-mediated transport%3B LOCATED IN: plasma membrane%2C vacuole%3B EXPRESSED IN: male gametophyte%2C guard cell%2C cultured cell%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%3B CONTAINS InterPro DOMAIN/s: Clathrin%2C heavy chain (InterPro:IPR016341)%2C Clathrin%2C heavy chain%2C linker/propeller domain (InterPro:IPR016025)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Clathrin%2C heavy chain%2C propeller%2C N-terminal (InterPro:IPR001473)%2C Clathrin%2C heavy chain%2C linker%2C core motif (InterPro:IPR015348)%2C Clathrin%2C heavy chain%2C propeller repeat (InterPro:IPR022365)%2C Armadillo-type fold (InterPro:IPR016024)%2C Clathrin%2C heavy chain/VPS%2C 7-fold repeat (InterPro:IPR000547)%3B BEST Arabidopsis thaliana protein match is: Clathrin%2C heavy chain (TAIR:AT3G08530.1)%3B Has 1621 Blast hits to 1503 proteins in 495 species: Archae - 0%3B Bacteria - 35%3B Metazoa - 935%3B Fungi - 178%3B Plants - 133%3B Viruses - 0%3B Other Eukaryotes - 340 (source: NCBI BLink). Chr3 - View
Brassica carinata BcaC09g48156 ChrC09 - View
Brassica napus C05p56960 C05 + View
Brassica oleracea BolC5t34359H C5 + View
Brassica rapa BraA05t22608Z A05 + View
Beta vulgaris EL10Ac2g04853 K04646 - clathrin heavy chain (CLTC) Chr2_EL10_PGA_scaffold6 + View
Camellia sinensis var. sinensis CSS0044696 PREDICTED: clathrin heavy chain 1-like [Glycine max] Chr7 + View
Camellia sinensis var. sinensis CSS0039595 PREDICTED: clathrin heavy chain 2 [Nelumbo nucifera] Chr1 + View
Camellia sinensis var. sinensis CSS0016403 PREDICTED: clathrin heavy chain 1-like [Musa acuminata subsp. malaccensis] Chr11 + View
Cannabis sativa CANSAT56G3925 NC_044371.1 + View
Cicer arietinum L. Ca_14962_v3 Ca_LG5_v3 + View
Corylus avellana Haze_24361 Similar to Os11g0104900: Clathrin heavy chain 1 (Oryza sativa subsp. japonica OX%3D39947) 6 + View
Corylus avellana Haze_17243 Similar to Os11g0104900: Clathrin heavy chain 1 (Oryza sativa subsp. japonica OX%3D39947) 11 + View
Coffea canephora Cc02_g06250 Clathrin heavy chain 1 chr2 - View
Citrus clementina Ciclev10030488m.g scaffold_4 + View
Ceratophyllum demersum CDE06G2472 4 + View
Carpinus fangiana Cfa011723 Cfa04 + View
Carpinus fangiana Cfa001302 Cfa01 - View
Carya illinoinensis CiPaw.14G057500 K04646 - clathrin heavy chain (CLTC) Chr14 - View
Carya illinoinensis CiPaw.02G193600 K04646 - clathrin heavy chain (CLTC) Chr02 + View
Carya illinoinensis CiPaw.13G074800 K04646 - clathrin heavy chain (CLTC) Chr13 - View
Citrullus lanatus ClCG11G006070 Clathrin heavy chain CG_Chr11 - View
Cucumis melo MELO3C008306.2 Clathrin heavy chain chr03 + View
Carica papaya Cpa.g.sc19.158 supercontig_19 - View
Chenopodium quinoa AUR62022907 CHC1: Clathrin heavy chain 1 C_Quinoa_Scaffold_3378 + View
Chenopodium quinoa AUR62012270 CHC1: Clathrin heavy chain 1 C_Quinoa_Scaffold_1995 + View
Cucumis sativus L. CsaV3_6G001890 Clathrin, heavy chain chr6 + View
Daucus carota DCAR_011827 hypothetical protein DCARv2_Chr3 + View
Davidia involucrata Dinv21747 GWHABJS00000004 - View
Davidia involucrata Dinv09636 GWHABJS00000007 + View
Davidia involucrata Dinv10607 GWHABJS00000009 + View
Durio zibethinus Duzib114G0136 NW_019167926.1 - View
Durio zibethinus Duzib106G1565 NW_019168492.1 - View
Erigeron canadensis ECA238G4598 Conyza_canadensis_scaffold:6 + View
Erigeron canadensis ECA233G5572 Conyza_canadensis_scaffold:1 - View
Erigeron canadensis ECA232G3581 Conyza_canadensis_scaffold:2 - View
Eucalyptus grandis Eucgr.J00193 Chr10 - View
Eucalyptus grandis Eucgr.G03075 Chr07 + View
Erythranthe guttata Migut.F00665 scaffold_6 - View
Eutrema salsugineum Thhalv10019884m.g K04646 - clathrin heavy chain (CLTC) scaffold_13 + View
Eutrema salsugineum Thhalv10005737m.g K04646 - clathrin heavy chain (CLTC) scaffold_19 - View
Fragaria x ananassa FAN16G3433 K04646 - clathrin heavy chain (CLTC) Fvb3-3 + View
Fragaria x ananassa FAN03G2492 K04646 - clathrin heavy chain (CLTC) Fvb7-3 - View
Fragaria x ananassa FAN01G3164 K04646 - clathrin heavy chain (CLTC) Fvb7-4 - View
Fragaria x ananassa FAN06G3688 PF00637//PF01394//PF09268//PF13672//PF13838 - Region in Clathrin and VPS (Clathrin) // Clathrin propeller repeat (Clathrin_propel) // Clathrin, heavy-chain linker (Clathrin-link) // Protein phosphatase 2C (PP2C_2) // Clathrin-H-link (Clathrin_H_link) Fvb7-2 + View
Fragaria x ananassa FAN25G3170 K04646 - clathrin heavy chain (CLTC) Fvb3-1 - View
Fragaria vesca FvH4_7g24660 K04646 - clathrin heavy chain (CLTC) Fvb7 + View
Gossypium hirsutum Gohir.D13G015800 K04646 - clathrin heavy chain (CLTC) D13 - View
Gossypium hirsutum Gohir.A10G239800 K04646 - clathrin heavy chain (CLTC) A10 - View
Gossypium hirsutum Gohir.D10G251700 K04646 - clathrin heavy chain (CLTC) D10 - View
Gossypium hirsutum Gohir.D04G068800 K04646 - clathrin heavy chain (CLTC) D04 - View
Gossypium hirsutum Gohir.A13G014600 K04646 - clathrin heavy chain (CLTC) A13 - View
Gossypium hirsutum Gohir.A05G330700 K04646 - clathrin heavy chain (CLTC) A05 + View
Glycine max Glyma.11G231100 K04646 - clathrin heavy chain (CLTC) Gm11 + View
Glycine max Glyma.14G058300 K04646 - clathrin heavy chain (CLTC) Gm14 - View
Glycine max Glyma.02G258200 K04646 - clathrin heavy chain (CLTC) Gm02 + View
Glycine max Glyma.18G026000 K04646 - clathrin heavy chain (CLTC) Gm18 - View
Gossypium raimondii Gorai.012G077900 Chr12 + View
Gossypium raimondii Gorai.013G017300 Chr13 - View
Gossypium raimondii Gorai.011G292200 Chr11 - View
Lupinus albus Lalb_Chr08g0231661 K04646 - clathrin heavy chain (CLTC) Lalb_Chr08 - View
Lotus japonicus LjContig00357g0009242 K04646 - clathrin heavy chain (CLTC) Contig00357 - View
Lotus japonicus Lj6g0013068 K04646 - clathrin heavy chain (CLTC) chr6 - View
Lonicera japonica Lj8C64G13 GWHAAZE00000008 - View
Lonicera japonica Lj2C1085G9 GWHAAZE00000002 + View
Lonicera japonica Lj1C958T7 GWHAAZE00000001 + View
Lactuca sativa Lsat_1_v5_gn_8_12740 K04646 - clathrin heavy chain (CLTC) Lsat_1_v8_lg_8 - View
Lactuca sativa Lsat_1_v5_gn_2_124121 K04646 - clathrin heavy chain (CLTC) Lsat_1_v8_lg_2 + View
Lactuca sativa Lsat_1_v5_gn_9_62220 Lsat_1_v8_lg_9 + View
Malus domestica MD07G1223800 Clathrin Chr07 + View
Malus domestica MD01G1154700 Clathrin Chr01 + View
Manihot esculenta Manes.07G131400 Chromosome07 + View
Manihot esculenta Manes.10G010500 Chromosome10 - View
Medicago truncatula Medtr3g070940 clathrin heavy chain chr3 + View
Medicago truncatula Medtr5g082900 clathrin heavy chain chr5 + View
Nelumbo nucifera Nn2g13176 chr2 + View
Olea europaea Oeu004685.1 chr11 - View
Oryza sativa ssp. japonica Os12g0104766 Similar to Clathrin heavy chain. chr12 + View
Petunia axillaris Peaxi162Scf00284g00818 Clathrin, heavy chain Peaxi162Scf00284 - View
Punica granatum PGR044G2384 NC_045134.1 + View
Punica granatum PGR142G1255 NC_045128.1 + View
Prunus persica Prupe.6G054300 Pp06 - View
Prunus persica Prupe.2G252300 K04646 - clathrin heavy chain (CLTC) Pp02 + View
Pisum sativum Psat2g031400 Region in Clathrin and VPS chr2LG1 - View
Populus trichocarpa Potri.001G278800 K04646 - clathrin heavy chain (CLTC) Chr01 + View
Populus trichocarpa Potri.010G186900 K04646 - clathrin heavy chain (CLTC) Chr10 - View
Populus trichocarpa Potri.008G070600 K04646 - clathrin heavy chain (CLTC) Chr08 + View
Phaseolus vulgaris Phvul.001G244300 K04646 - clathrin heavy chain (CLTC) Chr01 + View
Phaseolus vulgaris Phvul.008G222800 K04646 - clathrin heavy chain (CLTC) Chr08 - View
Phaseolus vulgaris Phvul.006G069700 K04646 - clathrin heavy chain (CLTC) Chr06 + View
Quercus lobata QL08p063391 8 + View
Rosa chinensis RcHm_v2.0_Chr1g0370491 RcHm_v2.0_Chr1 + View
Rhododendron simsii Rhsim03G0145000 chr03 + View
Rhododendron simsii Rhsim09G0178400 chr09 + View
Salix brachista Sabra10G0144100 GWHAAZH00000010 - View
Salix brachista Sabra08G0051900 GWHAAZH00000008 + View
Salix brachista Sabra09G0055400 GWHAAZH00000009 + View
Simmondsia chinensis Sc11g0005160 GWHAASQ00000011 + View
Sechium edule Sed0014383 LG11 - View
Sechium edule Sed0008855 LG03 - View
Solanum lycopersicum Solyc05g052510.4 Clathrin heavy chain (AHRD V3.3 *** A0A2G2WTL3_CAPBA) SL4.0ch05 - View
Solanum lycopersicum Solyc03g096000.3 Clathrin heavy chain (AHRD V3.3 *** A0A2G3CUD9_CAPCH) SL4.0ch03 - View
Schrenkiella parvula Sp3g09440 K04646 - clathrin heavy chain (CLTC) ch3-1 - View
Solanum pennellii Sopen03g026100 Clathrin, heavy chain | FUNCTIONS IN: structural molecule activity, binding | INVOLVED IN: intracellular protein transport, vesicle-mediated transport | LOCATED IN: plasma membrane, vacuole | EXPRESSED IN: male gametophyte, guard cell, cultured cell, pollen tube | EXPRESSED DURING: L mature pollen stage, M germinated pollen stage | CONTAINS InterPro DOMAIN/s: Clathrin, heavy chain , Clathrin, heavy chain, linker/propeller domain , Tetratricopeptide-like helical , Clathrin, heavy chain, propeller, N-terminal , Clathrin, heavy chain, linker, core motif , Clathrin, heavy chain, propeller repeat , Armadillo-type fold , Clathrin, heavy chain/VPS, 7-fold repeat | BEST Arabidopsis thaliana protein match is: Clathrin, heavy chain Spenn-ch03 - View
Solanum pennellii Sopen05g031050 Clathrin, heavy chain | FUNCTIONS IN: structural molecule activity, binding | INVOLVED IN: intracellular protein transport, vesicle-mediated transport | LOCATED IN: plasma membrane, vacuole | EXPRESSED IN: male gametophyte, guard cell, cultured cell, pollen tube | EXPRESSED DURING: L mature pollen stage, M germinated pollen stage | CONTAINS InterPro DOMAIN/s: Clathrin, heavy chain , Clathrin, heavy chain, linker/propeller domain , Tetratricopeptide-like helical , Clathrin, heavy chain, propeller, N-terminal , Clathrin, heavy chain, linker, core motif , Clathrin, heavy chain, propeller repeat , Armadillo-type fold , Clathrin, heavy chain/VPS, 7-fold repeat | BEST Arabidopsis thaliana protein match is: Clathrin, heavy chain Spenn-ch05 - View
Selenicereus undatus Hund15915 Scaffold_33677 - View
Selenicereus undatus Hund13877 Scaffold_33679 + View
Trochodendron aralioides TAR623G0521 group7 + View
Trochodendron aralioides TAR633G1991 group2 + View
Theobroma cacao Thecc.10G014100 Clathrin Chromosome_10 - View
Tarenaya hassleriana THA.LOC104810110 clathrin heavy chain 2-like NW_010965122.1 + View
Tarenaya hassleriana THA.LOC104824328 clathrin heavy chain 1-like NW_010966881.1 + View
Trifolium pratense TPR.G38449 Tp57577_TGAC_v2_LG5 - View
Trifolium pratense TPR.G11199 Tp57577_TGAC_v2_LG7 + View
Tripterygium wilfordii TWI09G1586 NC_052245.1 - View
Tripterygium wilfordii TWI53G0096 NC_052244.1 - View
Tripterygium wilfordii TWI73G0535 NC_052232.1 + View
Tripterygium wilfordii TWI31G1166 NC_052233.1 - View
Vaccinium macrocarpon vmacro10032 Similar to CHC1: Clathrin heavy chain 1 (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro06959 Similar to CHC1: Clathrin heavy chain 1 (Arabidopsis thaliana OX%3D3702) chr2_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0647G2194 CM024073.1 - View
Vigna mungo VMungo0647G2110 CM024073.1 + View
Vigna mungo VMungo1383G3483 CM024070.1 + View
Vitis vinifera GSVIVG01032792001 chr13 + View