Gene: Solyc03g096000.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc03g096000.3
- Transcript Identifier Solyc03g096000.3.1
- Gene Type Coding gene
- Location SL4.0ch03 : 52369510-52382338 : negative
Gene Family Information
- ID HOM05D001399
- #Genes/#Species 447/95
- Phylogenetic origin
- ID ORTHO05D001670
- #Genes/#Species 372/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Solyc03g096000.3.1
- uniprot A0A3Q7FM19
- gene_id Solyc03g096000
Descriptions
- Description Clathrin heavy chain (AHRD V3.3 *** A0A2G3CUD9_CAPCH)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016192 | IEA | GOA Database | vesicle-mediated transport | |
| GO:0016192 | IEA | InterPro | vesicle-mediated transport | |
| GO:0006886 | IEA | GOA Database | intracellular protein transport | |
| GO:0006886 | IEA | InterPro | intracellular protein transport |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005198 | IEA | GOA Database | structural molecule activity | |
| GO:0005198 | IEA | InterPro | structural molecule activity | |
| GO:0032051 | IEA | GOA Database | clathrin light chain binding | |
| GO:0032051 | IEA | InterPro | clathrin light chain binding | |
| GO:0005515 | IEA | InterPro | protein binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0071439 | IEA | GOA Database | clathrin complex | |
| GO:0071439 | IEA | InterPro | clathrin complex | |
| GO:0030130 | IEA | GOA Database | clathrin coat of trans-Golgi network vesicle | |
| GO:0030130 | IEA | InterPro | clathrin coat of trans-Golgi network vesicle | |
| GO:0030132 | IEA | GOA Database | clathrin coat of coated pit | |
| GO:0030132 | IEA | InterPro | clathrin coat of coated pit | |
| GO:0031410 | IEA | GOA Database | cytoplasmic vesicle | |
| GO:0005905 | IEA | GOA Database | clathrin-coated pit | |
| GO:0030659 | IEA | GOA Database | cytoplasmic vesicle membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR016341 | Clathrin, heavy chain |
| IPR015348 | Clathrin, heavy chain, linker, core motif |
| IPR016024 | Armadillo-type fold |
| IPR016025 | Clathrin heavy chain, N-terminal |
| IPR000547 | Clathrin, heavy chain/VPS, 7-fold repeat |
| IPR022365 | Clathrin, heavy chain, propeller repeat |
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| Mapman id | Description |
|---|---|
| 22.3.1.1.1 | Vesicle trafficking.post-Golgi trafficking.clathrin coated vesicle (CCV) machinery.clathrin triskelion structure.heavy chain |