Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Prupe.1G419400 K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) Pp01 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG8G6450 LG-8 - View
Acer truncatum Atru.chr5.2293 chr5 + View
Actinidia chinensis Actinidia02440 Lachesis_group2 - View
Actinidia chinensis Actinidia10220 Lachesis_group26 - View
Actinidia chinensis Actinidia19296 Lachesis_group28 - View
Arabidopsis lyrata AL3G33120 scaffold_3 - View
Amaranthus hybridus Ah.01g007090 AmaHy_arrow1_Scaffold_1 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.S90AI0 K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) arahy.Tifrunner.gnm1.Arahy.06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.R5JV3U PTHR11864//PTHR11864:SF21 - PRE-MRNA-PROCESSING PROTEIN PRP40 // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.09 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.SU0RK2 PTHR11864//PTHR11864:SF21 - PRE-MRNA-PROCESSING PROTEIN PRP40 // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.19 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ZAPI4Q K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) arahy.Tifrunner.gnm1.Arahy.16 + View
Arabidopsis thaliana AT3G19670 pre-mRNA-processing protein 40B Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold for RNA processing machineries. Ubiquitously expressed and localize to the nucleus. pre-mRNA-processing protein 40B (PRP40B)%3B FUNCTIONS IN: RNA polymerase binding%3B INVOLVED IN: RNA splicing%3B LOCATED IN: nucleus%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: FF domain (InterPro:IPR002713)%2C WW/Rsp5/WWP (InterPro:IPR001202)%3B BEST Arabidopsis thaliana protein match is: pre-mRNA-processing protein 40A (TAIR:AT1G44910.1)%3B Has 12458 Blast hits to 9290 proteins in 504 species: Archae - 82%3B Bacteria - 460%3B Metazoa - 6303%3B Fungi - 1179%3B Plants - 857%3B Viruses - 9%3B Other Eukaryotes - 3568 (source: NCBI BLink). Chr3 - View
Brassica napus A05p29900 A05 + View
Beta vulgaris EL10Ac9g22179 K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) Chr9_EL10_PGA_scaffold8 + View
Camellia sinensis var. sinensis CSS0035447 PREDICTED: pre-mRNA-processing protein 40A [Nelumbo nucifera] Chr13 - View
Corylus avellana Haze_10301 Similar to PRP40A: Pre-mRNA-processing protein 40A (Arabidopsis thaliana OX%3D3702) 9 + View
Coffea canephora Cc02_g20040 Putative Predicted protein chr2 - View
Citrus clementina Ciclev10027741m.g scaffold_8 + View
Carpinus fangiana Cfa004700 Cfa02 + View
Cardamine hirsuta CARHR095130 Pre-mRNA-processing protein prp40 Chr3 - View
Carya illinoinensis CiPaw.05G020700 K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) Chr05 + View
Citrullus lanatus ClCG10G010050 Pre-mRNA-processing factor 40-A-like protein CG_Chr10 + View
Cucumis melo MELO3C016837.2 Pre-mRNA-processing 40A-like protein chr07 + View
Cucumis melo MELO3C018022.2 Pre-mRNA-processing protein 40A chr07 - View
Corchorus olitorius COL.COLO4_32485 hypothetical protein AWUE01021124.1 + View
Chenopodium quinoa AUR62027023 PRP40A: Pre-mRNA-processing protein 40A C_Quinoa_Scaffold_2314 - View
Chenopodium quinoa AUR62030865 PRP40A: Pre-mRNA-processing protein 40A C_Quinoa_Scaffold_2587 - View
Capsella rubella Carub.0003s1955 K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) scaffold_3 - View
Cucumis sativus L. CsaV3_4G000090 Pre-mrna-processing protein 40a chr4 + View
Cucumis sativus L. CsaV3_4G035260 pre-mRNA-processing protein 40A chr4 - View
Davidia involucrata Dinv09538 GWHABJS00000005 - View
Davidia involucrata Dinv44932 GWHABJS00000002 + View
Durio zibethinus Duzib132G0903 NW_019167915.1 - View
Durio zibethinus Duzib116G0418 NW_019167949.1 - View
Durio zibethinus Duzib093G1412 NW_019167937.1 + View
Eucalyptus grandis Eucgr.G01189 Chr07 + View
Eucalyptus grandis Eucgr.F02226 Chr06 - View
Erythranthe guttata Migut.N02796 scaffold_14 - View
Eutrema salsugineum Thhalv10019995m.g K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) scaffold_13 + View
Fragaria x ananassa FAN27G2083 K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) Fvb2-1 + View
Fragaria x ananassa FAN15G3319 K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) Fvb2-4 + View
Fragaria x ananassa FAN15G2976 K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) Fvb2-4 + View
Fragaria x ananassa FAN20G2176 K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) Fvb2-3 - View
Fragaria x ananassa FAN24G2311 PTHR11864//PTHR11864:SF21 - PRE-MRNA-PROCESSING PROTEIN PRP40 // SUBFAMILY NOT NAMED Fvb2-2 - View
Fragaria x ananassa FAN20G2095 PTHR11864//PTHR11864:SF21 - PRE-MRNA-PROCESSING PROTEIN PRP40 // SUBFAMILY NOT NAMED Fvb2-3 + View
Fragaria vesca FvH4_2g03330 K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) Fvb2 + View
Gossypium hirsutum Gohir.D06G022600 PTHR11864//PTHR11864:SF0//PTHR11864:SF21 - PRE-MRNA-PROCESSING PROTEIN PRP40 // PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST) // SUBFAMILY NOT NAMED D06 - View
Gossypium hirsutum Gohir.A06G025500 PTHR11864//PTHR11864:SF0//PTHR11864:SF21 - PRE-MRNA-PROCESSING PROTEIN PRP40 // PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST) // SUBFAMILY NOT NAMED A06 - View
Glycine max Glyma.20G135800 PTHR11864//PTHR11864:SF21 - PRE-MRNA-PROCESSING PROTEIN PRP40 // SUBFAMILY NOT NAMED Gm20 - View
Glycine max Glyma.17G233000 PTHR11864//PTHR11864:SF0 - PRE-MRNA-PROCESSING PROTEIN PRP40 // PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST) Gm17 + View
Glycine max Glyma.10G255700 PTHR11864//PTHR11864:SF21 - PRE-MRNA-PROCESSING PROTEIN PRP40 // SUBFAMILY NOT NAMED Gm10 + View
Gossypium raimondii Gorai.010G027200 Chr10 - View
Hydrangea macrophylla Hma1.2p1_0661F.1_g198110 Hma1.2p1_0661F.1 + View
Lupinus albus Lalb_Chr02g0144901 K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) Lalb_Chr02 + View
Lupinus albus Lalb_Chr06g0164981 K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) Lalb_Chr06 + View
Lotus japonicus Lj5g0012181 PTHR11864//PTHR11864:SF21 - PRE-MRNA-PROCESSING PROTEIN PRP40 // SUBFAMILY NOT NAMED chr5 - View
Lotus japonicus Lj5g0025981 PTHR11864:SF0 - PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST) chr5 + View
Lonicera japonica Lj9A337T45 GWHAAZE00000009 - View
Malus domestica MD05G1105600 pre-mRNA-processing protein 40B Chr05 - View
Malus domestica MD08G1078500 pre-mRNA-processing protein 40A Chr08 + View
Manihot esculenta Manes.10G086900 Chromosome10 - View
Medicago truncatula Medtr1g106025 pre-mRNA-processing 40A-like protein chr1 + View
Medicago truncatula Medtr1g017520 pre-mRNA-processing 40A-like protein chr1 + View
Nelumbo nucifera Nn5g30660 chr5 - View
Olea europaea Oeu037290.1 chr5 - View
Petunia axillaris Peaxi162Scf00152g00644 Pre-mRNA-processing factor 40 homolog A Peaxi162Scf00152 - View
Punica granatum PGR031G3281 NC_045127.1 + View
Punica granatum PGR042G2127 NC_045130.1 + View
Papaver somniferum PSO017G4256 NC_039362.1 - View
Papaver somniferum PSO170G6386 NC_039360.1 - View
Populus trichocarpa Potri.014G013100 PTHR11864//PTHR11864:SF0 - PRE-MRNA-PROCESSING PROTEIN PRP40 // PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST) Chr14 + View
Populus trichocarpa Potri.002G115501 Chr02 + View
Populus trichocarpa Potri.009G085400 K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) Chr09 + View
Populus trichocarpa Potri.001G289800 K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) Chr01 + View
Phaseolus vulgaris Phvul.001G029800 PTHR11864:SF0 - PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST) Chr01 - View
Phaseolus vulgaris Phvul.007G047100 Chr07 - View
Rosa chinensis RcHm_v2.0_Chr6g0309991 RcHm_v2.0_Chr6 - View
Rosa chinensis RcHm_v2.0_Chr6g0248471 RcHm_v2.0_Chr6 + View
Rhododendron simsii Rhsim06G0064500 chr06 - View
Rhododendron simsii RhsimUnG0123000 ctg321 + View
Striga asiatica SGA_v2.0_scaffold219G42539 scaffold219 - View
Salvia bowleyana SalBow6G6764 GWHASIU00000002 + View
Salix brachista Sabra09G0065600 GWHAAZH00000009 + View
Salix brachista Sabra16G0181400 GWHAAZH00000016 + View
Salix brachista Sabra14G0007900 GWHAAZH00000014 + View
Sechium edule Sed0000428 LG07 - View
Selenicereus undatus Hund00421 Scaffold_33678 + View
Selenicereus undatus Hund05277 Scaffold_19641 + View
Trochodendron aralioides TAR625G1532 group4 - View
Trochodendron aralioides TAR381G0254 group11 - View
Theobroma cacao Thecc.02G119900 Pre-mRNA-processing protein 40B Chromosome_2 - View
Tarenaya hassleriana THA.LOC104826497 pre-mRNA-processing protein 40B isoform X1 NW_010967707.1 - View
Trifolium pratense TPR.G21140 Tp57577_TGAC_v2_LG1 - View
Tripterygium wilfordii TWI59G0753 NC_052248.1 - View
Vaccinium macrocarpon vmacro01946 Similar to PRP40A: Pre-mRNA-processing protein 40A (Arabidopsis thaliana OX%3D3702) chr1_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0647G0326 CM024073.1 + View
Vigna mungo VMungo0720G0973 CM024071.1 + View