Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0020039 RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4; AltName: Full=Glycine-rich protein 10; Short=GRP 10 [Nicotiana tabacum] Chr13 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG11G9470 LG-11 + View
Aethionema arabicum Aa31LG5G15860 LG-5 - View
Actinidia chinensis Actinidia32227 Lachesis_group19 + View
Actinidia chinensis Actinidia24339 Lachesis_group24 + View
Arabidopsis lyrata AL6G39230 scaffold_6 - View
Avicennia marina MSTRG.18164 ScioBoG_22153_HRSCAF_22259 - View
Aquilegia oxysepala Aqoxy2G02974 CHR02 - View
Aquilegia oxysepala Aqoxy5G00738 CHR05 + View
Arabidopsis thaliana AT5G27720 Small nuclear ribonucleoprotein family protein embryo defective 1644 (emb1644)%3B CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%2C Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (InterPro:IPR006649)%3B BEST Arabidopsis thaliana protein match is: snRNP core protein SMD3 (TAIR:AT1G76300.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 + View
Amborella trichopoda ATR0796G058 AmTr_v1.0_scaffold00045 + View
Brassica carinata BcaC04g23643 ChrC04 + View
Brassica carinata BcaB04g19685 ChrB04 + View
Brassica napus C07p41100 C07 + View
Brassica napus C09p05900 C09 + View
Brassica napus A06p37360 A06 - View
Brassica napus A09p05420 A09 + View
Brassica oleracea BolC7t44637H C7 + View
Brassica oleracea BolC9t53516H C9 + View
Brassica rapa BraA09t36180Z A09 + View
Brassica rapa BraA06t26659Z A06 - View
Capsicum annuum CAN.G339.22 PGAv.1.6.scaffold339 - View
Capsicum annuum CAN.G1459.13 PGAv.1.6.scaffold1459 + View
Coffea canephora Cc02_g34160 Probable U6 snRNA-associated Sm-like protein LSm4 chr2 + View
Coffea canephora Cc01_g20720 DNA mismatch repair protein, putative chr1 + View
Citrus clementina Ciclev10018899m.g scaffold_3 + View
Carpinus fangiana Cfa005938 Cfa02 - View
Cardamine hirsuta CARHR186240 Small nuclear ribonucleoprotein family protein Chr6 + View
Carya illinoinensis CiPaw.08G096800 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) Chr08 - View
Carya illinoinensis CiPaw.07G107000 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) Chr07 + View
Cucumis melo MELO3C016013.2 DNA mismatch repair protein PMS1 chr01 - View
Carica papaya Cpa.g.sc9.220 supercontig_9 + View
Capsella rubella Carub.0006s2485 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) scaffold_6 - View
Cucumis sativus L. CsaV3_7G029150 DNA mismatch repair protein PMS1 chr7 + View
Davidia involucrata Dinv40337 GWHABJS00000005 + View
Davidia involucrata Dinv33041 GWHABJS00000010 + View
Durio zibethinus Duzib133G1030 NW_019167938.1 - View
Durio zibethinus Duzib211G0610 NW_019168049.1 - View
Durio zibethinus Duzib138G0111 NW_019167893.1 - View
Eucalyptus grandis Eucgr.K03466 Chr11 + View
Eutrema salsugineum Thhalv10021732m.g K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) scaffold_13 - View
Fragaria x ananassa FAN27G3300 K10858 - DNA mismatch repair protein PMS2 (PMS2) Fvb2-1 + View
Fragaria x ananassa FAN15G0019 PTHR10073//PTHR10073:SF12 - DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL // MISMATCH REPAIR ENDONUCLEASE PMS2 Fvb2-4 + View
Gossypium hirsutum Gohir.D12G135200 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) D12 - View
Gossypium hirsutum Gohir.A12G131300 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) A12 - View
Glycine max Glyma.10G019100 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) Gm10 - View
Glycine max Glyma.19G210402 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) Gm19 + View
Glycine max Glyma.03G213600 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) Gm03 + View
Gossypium raimondii Gorai.008G146200 Chr08 - View
Hydrangea macrophylla Hma1.2p1_1292F.1_g273770 Hma1.2p1_1292F.1 + View
Lotus japonicus Lj5g0020775 K10858 - DNA mismatch repair protein PMS2 (PMS2) chr5 + View
Lactuca sativa Lsat_1_v5_gn_5_190620 Lsat_1_v8_lg_5 - View
Magnolia biondii MBI19_g09229_MAGBIO AED:0.19 Chr19 - View
Magnolia biondii MBI18_g08110_MAGBIO AED:0.15 Chr18 - View
Malus domestica MD11G1305800 DNA mismatch repair protein Chr11 + View
Manihot esculenta Manes.09G170401 Chromosome09 + View
Manihot esculenta Manes.05G063400 Chromosome05 - View
Manihot esculenta Manes.01G217500 Chromosome01 + View
Medicago truncatula Medtr1g088710 u6 snRNA-associated-like-Smprotein chr1 - View
Nelumbo nucifera Nn4g25821 chr4 - View
Nelumbo nucifera Nn3g21455 chr3 + View
Olea europaea Oeu048345.1 chr1 - View
Oryza sativa ssp. japonica Os01g0256900 Similar to SmX6 protein. chr01 - View
Petunia axillaris Peaxi162Scf00037g01217 Protein of unknown function (DUF1624) Peaxi162Scf00037 + View
Punica granatum PGR044G1196 NC_045134.1 + View
Prunus persica Prupe.8G259200 Pp08 + View
Papaver somniferum PSO832G1552 NC_039367.1 - View
Populus trichocarpa Potri.014G130700 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) Chr14 - View
Populus trichocarpa Potri.002G205700 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) Chr02 - View
Phaseolus vulgaris Phvul.001G206200 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) Chr01 + View
Quercus lobata QL03p020177 3 - View
Rhododendron simsii Rhsim01G0284100 chr01 + View
Rhododendron simsii Rhsim13G0011500 chr13 - View
Striga asiatica SGA_v2.0_scaffold2G01402 scaffold2 - View
Salix brachista Sabra14G0097300 GWHAAZH00000014 - View
Salix brachista Sabra02G0153600 GWHAAZH00000002 + View
Sechium edule Sed0008302 LG07 - View
Solanum lycopersicum Solyc09g074990.4 DNA mismatch repair protein PMS1 (AHRD V3.3 *** A0A1U8FBY8_CAPAN) SL4.0ch09 + View
Solanum lycopersicum Solyc01g099740.4 U6 snRNA-associated Sm-like protein LSm4 (AHRD V3.3 *-* A0A328E599_9ASTE) SL4.0ch01 + View
Schrenkiella parvula Sp3g04360 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) ch3-1 + View
Schrenkiella parvula Sp2g20890 K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) ch2-4 + View
Solanum pennellii Sopen09g029810 Encodes a protein similar to PMS1 in yeast, a member of the family of eukaryotic MutL homologs. The protein appears to play a role in DNA mismatch repair and in the suppression of somatic homeologous recombination. | POSTMEIOTIC SEGREGATION 1 (PMS1) | FUNCTIONS IN: mismatched DNA binding, ATP binding | INVOLVED IN: mismatch repair, fruit development, seed development, DNA recombination, pollen development | LOCATED IN: nucleus | EXPRESSED IN: 17 plant structures | EXPRESSED DURING: 9 growth stages | CONTAINS InterPro DOMAIN/s: DNA mismatch repair, conserved site , ATPase-like, ATP-binding domain , DNA mismatch repair protein, C-terminal , MutL, C-terminal, dimerisation , DNA mismatch repair protein, N-terminal , Ribosomal protein S5 domain 2-type fold , DNA mismatch repair protein , Post Meiotic Segregation 2 , Ribosomal protein S5 domain 2-type fold, subgroup | BEST Arabidopsis thaliana protein match is: MUTL-homologue 1 Spenn-ch09 + View
Solanum pennellii Sopen01g043260 Probable U6 snRNA-associated Sm-like protein LSm4 (Glycine-rich protein 10) (GRP 10) - Nicotiana tabacum (Common tobacco), embryo defective 1644 (emb1644) | CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain , Like-Sm ribonucleoprotein (LSM)-related domain , Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type | BEST Arabidopsis thaliana protein match is: snRNP core protein SMD3 Spenn-ch01 + View
Trochodendron aralioides TAR362G0065 group17 - View
Trochodendron aralioides TAR365G1115 group16 + View
Theobroma cacao Thecc.01G298000 DNA mismatch repair protein Chromosome_1 + View
Tarenaya hassleriana THA.LOC104818719 sm-like protein LSM4 NW_010966177.1 + View
Tarenaya hassleriana THA.LOC104801271 DNA mismatch repair protein PMS1 NW_010969548.1 + View
Tarenaya hassleriana THA.LOC104821724 sm-like protein LSM4 NW_010966542.1 + View
Trifolium pratense TPR.G9614 Tp57577_TGAC_v2_LG6 - View
Tripterygium wilfordii TWI14G0261 NC_052249.1 + View
Tripterygium wilfordii TWI59G0539 NC_052248.1 - View
Vaccinium macrocarpon vmacro02462 Similar to PMS1: DNA mismatch repair protein PMS1 (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0720G1966 CM024071.1 - View
Vanilla planifolia HPP92_006923 U6 snRNA-associated Sm-like protein LSm4 *** CM028152.1 - View
Vitis vinifera GSVIVG01027985001 chr7 + View
Vitis vinifera GSVIVG01031139001 chr14 + View