Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0016616 hypothetical protein VITISV_036556 [Vitis vinifera] Chr10 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G22180 LG-1 - View
Aethionema arabicum Aa31LG5G22680 LG-5 - View
Acer truncatum Atru.chr12.597 chr12 + View
Actinidia chinensis Actinidia03007 Lachesis_group22 + View
Actinidia chinensis Actinidia19735 Lachesis_group17 - View
Arabidopsis lyrata AL4G33720 scaffold_4 - View
Avicennia marina MSTRG.5705 ScioBoG_102839_HRSCAF_103093 + View
Avicennia marina MSTRG.19116 ScioBoG_25048_HRSCAF_25167 + View
Amaranthus hybridus Ah.10g033180 Serine/arginine-rich splicing factor RS2Z32 (RS-containing zinc finger protein 32) (At-RS2Z32) (At-RSZ32) (AtRSZ32) (Serine/arginine-rich splicing factor RSZ34) (AtRSZ34) AmaHy_arrow1_Scaffold_10 - View
Aquilegia oxysepala Aqoxy4G03099 CHR04 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.U08GD1 K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) arahy.Tifrunner.gnm1.Arahy.16 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.6ZDT16 K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) arahy.Tifrunner.gnm1.Arahy.06 + View
Arabidopsis thaliana AT2G37340 arginine/serine-rich zinc knuckle-containing protein 33 encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926. arginine/serine-rich zinc knuckle-containing protein 33 (RSZ33)%3B FUNCTIONS IN: zinc ion binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: spliceosome assembly%2C nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C Zinc finger%2C CCHC-type (InterPro:IPR001878)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (TAIR:AT3G53500.2)%3B Has 128112 Blast hits to 126672 proteins in 4377 species: Archae - 175%3B Bacteria - 14621%3B Metazoa - 47197%3B Fungi - 12494%3B Plants - 32367%3B Viruses - 521%3B Other Eukaryotes - 20737 (source: NCBI BLink). arginine/serine-rich zinc knuckle-containing protein 33 (RSZ33)%3B FUNCTIONS IN: zinc ion binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: spliceosome assembly%2C nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C Zinc finger%2C CCHC-type (InterPro:IPR001878)%2C Zinc finger%2C CCHC retroviral-type (InterPro:IPR013084)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (TAIR:AT3G53500.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr2 - View
Brassica napus A09p46490 A09 - View
Brassica napus A03p20610 A03 - View
Brassica napus C08p28840 C08 - View
Brassica oleracea BolC6t37329H C6 - View
Brassica oleracea BolC8t50486H C8 - View
Brassica oleracea BolC3t14815H C3 - View
Brassica oleracea BolC4t25477H C4 + View
Brassica rapa BraA03t09470Z A03 + View
Brassica rapa BraA07t29849Z A07 - View
Brassica rapa BraA09t40114Z A09 - View
Cicer arietinum L. Ca_08805_v3 Ca_LG3_v3 + View
Corylus avellana Haze_20697 Similar to RS2Z32: Serine/arginine-rich splicing factor RS2Z32 (Arabidopsis thaliana OX%3D3702) 10 - View
Corylus avellana Haze_16967 Similar to RS2Z32: Serine/arginine-rich splicing factor RS2Z32 (Arabidopsis thaliana OX%3D3702) 11 - View
Coffea canephora Cc06_g03240 Serine/arginine-rich splicing factor RS2Z32 chr6 + View
Coffea canephora Cc02_g08690 Serine/arginine-rich splicing factor RS2Z32 chr2 + View
Citrus clementina Ciclev10032170m.g scaffold_4 + View
Ceratophyllum demersum CDE09G1066 7 + View
Ceratophyllum demersum CDE02G4187 1 - View
Carpinus fangiana Cfa017463 Cfa07 + View
Carpinus fangiana Cfa001562 Cfa01 + View
Cardamine hirsuta CARHR210700 Arginine/serine-rich splicing factor, putative Chr6 - View
Cardamine hirsuta CARHR132250 Arginine/serine-rich splicing factor, putative Chr4 + View
Carya illinoinensis CiPaw.02G178400 KOG0106 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) Chr02 - View
Carya illinoinensis CiPaw.09G185800 PF00076//PF00098//PF13893 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc knuckle (zf-CCHC) // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5) Chr09 - View
Carya illinoinensis CiPaw.01G279300 KOG0106//KOG0107 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) // Alternative splicing factor SRp20/9G8 (RRM superfamily) Chr01 - View
Citrullus lanatus ClCG02G013680 Arginine/serine-rich splicing factor RS2Z39 transcript V CG_Chr02 + View
Cucumis melo MELO3C011709.2 Arginine/serine-rich splicing factor, putative chr10 - View
Carica papaya Cpa.g.sc114.20 supercontig_114 + View
Capsella rubella Carub.0003s0868 PTHR23147//PTHR23147:SF1 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED scaffold_3 + View
Capsella rubella Carub.0004s1925 KOG0114//KOG4207 - Predicted RNA-binding protein (RRM superfamily) // Predicted splicing factor, SR protein superfamily scaffold_4 - View
Capsella rubella Carub.0005s2007 PF00076//PF00098//PF13893 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc knuckle (zf-CCHC) // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5) scaffold_5 - View
Cucumis sativus L. CsaV3_5G006510 Arginine/serine-rich splicing factor, putative chr5 - View
Daucus carota DCAR_009265 hypothetical protein DCARv2_Chr3 + View
Daucus carota DCAR_017750 hypothetical protein DCARv2_Chr5 - View
Davidia involucrata Dinv37228 GWHABJS00000021 - View
Durio zibethinus Duzib093G1184 NW_019167937.1 - View
Durio zibethinus Duzib128G1379 NW_019168481.1 + View
Durio zibethinus Duzib114G0437 NW_019167926.1 + View
Erigeron canadensis ECA248G3238 Conyza_canadensis_scaffold:9 + View
Erigeron canadensis ECA238G4642 Conyza_canadensis_scaffold:6 + View
Eucalyptus grandis Eucgr.G02779 Chr07 - View
Erythranthe guttata Migut.L01640 scaffold_12 + View
Erythranthe guttata Migut.J00390 scaffold_10 + View
Eutrema salsugineum Thhalv10017989m.g K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) scaffold_10 - View
Eutrema salsugineum Thhalv10014414m.g PTHR23147//PTHR23147:SF1 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED scaffold_2 + View
Fragaria x ananassa FAN02G0443 K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) Fvb6-4 + View
Fragaria x ananassa FAN09G4327 Fvb6-2 - View
Fragaria x ananassa FAN03G0311 K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) Fvb7-3 + View
Fragaria vesca FvH4_6g14771 K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) Fvb6 + View
Fragaria vesca FvH4_7g20711 KOG0105//KOG0107 - Alternative splicing factor ASF/SF2 (RRM superfamily) // Alternative splicing factor SRp20/9G8 (RRM superfamily) Fvb7 - View
Gossypium hirsutum Gohir.D01G207400 KOG0107//KOG4207 - Alternative splicing factor SRp20/9G8 (RRM superfamily) // Predicted splicing factor, SR protein superfamily D01 - View
Gossypium hirsutum Gohir.A01G218600 PTHR23147//PTHR23147:SF1 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED A01 - View
Gossypium hirsutum Gohir.A05G343100 PTHR23147//PTHR23147:SF1 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED A05 + View
Gossypium hirsutum Gohir.A10G208800 KOG0106//KOG0107 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) // Alternative splicing factor SRp20/9G8 (RRM superfamily) A10 - View
Gossypium hirsutum Gohir.D10G217100 KOG0106//KOG0107 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) // Alternative splicing factor SRp20/9G8 (RRM superfamily) D10 - View
Glycine max Glyma.19G176100 PTHR23147//PTHR23147:SF1 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED Gm19 + View
Glycine max Glyma.03G175400 K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) Gm03 + View
Gossypium raimondii Gorai.002G252500 Chr02 - View
Gossypium raimondii Gorai.010G203100 Chr10 + View
Gossypium raimondii Gorai.011G242700 Chr11 - View
Hydrangea macrophylla Hma1.2p1_0111F.1_g053400 Hma1.2p1_0111F.1 + View
Lupinus albus Lalb_Chr02g0153381 PF00098//PF13893 - Zinc knuckle (zf-CCHC) // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5) Lalb_Chr02 + View
Lupinus albus Lalb_Chr20g0113051 K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) Lalb_Chr20 - View
Lupinus albus Lalb_Chr01g0019111 KOG0107 - Alternative splicing factor SRp20/9G8 (RRM superfamily) Lalb_Chr01 - View
Lotus japonicus Lj1g0023882 K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) chr1 - View
Lonicera japonica Lj1A927T67 GWHAAZE00000001 - View
Lonicera japonica Lj2C103T9 GWHAAZE00000002 + View
Lonicera japonica Lj3C975T6 GWHAAZE00000003 + View
Lonicera japonica Lj8C93T4 GWHAAZE00000008 + View
Lactuca sativa Lsat_1_v5_gn_1_54761 Lsat_1_v8_lg_1 + View
Malus domestica MD07G1184300 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain Chr07 - View
Malus domestica MD12G1131700 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain Chr12 - View
Manihot esculenta Manes.09G072000 Chromosome09 - View
Manihot esculenta Manes.08G000200 Chromosome08 + View
Nelumbo nucifera Nn2g10557 chr2 + View
Nicotiana tabacum Nitab4.5_0000914g0130 Zinc finger, CCHC-type, RNA recognition motif domain, Nucleotide-binding, alpha-beta plait Nitab4.5_0000914 - View
Nicotiana tabacum Nitab4.5_0000643g0180 RNA recognition motif domain, Nucleotide-binding, alpha-beta plait Nitab4.5_0000643 + View
Olea europaea Oeu029116.1 scaffold2429 - View
Petunia axillaris Peaxi162Scf00015g00272 RNA-binding family protein with retrovirus zinc finger-like domain isoform 3 Peaxi162Scf00015 + View
Petunia axillaris Peaxi162Scf00597g00058 arginine/serine-rich zinc knuckle-containing protein 33 Peaxi162Scf00597 + View
Punica granatum PGR044G0052 NC_045134.1 - View
Prunus persica Prupe.2G224200 K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) Pp02 - View
Prunus persica Prupe.6G246100 Pp06 - View
Papaver somniferum PSO384G0018 NC_039368.1 - View
Populus trichocarpa Potri.016G081700 K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) Chr16 + View
Populus trichocarpa Potri.006G215200 K12896 - splicing factor, arginine/serine-rich 7 (SFRS7) Chr06 + View
Phaseolus vulgaris Phvul.001G172600 Chr01 + View
Quercus lobata QL07p045981 7 - View
Quercus lobata QL08p057485 8 - View
Rosa chinensis RcHm_v2.0_Chr3g0468001 RcHm_v2.0_Chr3 + View
Rosa chinensis RcHm_v2.0_Chr1g0364971 RcHm_v2.0_Chr1 - View
Rhododendron simsii Rhsim05G0184800 chr05 - View
Striga asiatica SGA_v2.0_scaffold94G28645 scaffold94 + View
Striga asiatica SGA_v2.0_scaffold126G33861 scaffold126 + View
Salvia bowleyana SalBow3G3979 GWHASIU00000006 - View
Salix brachista Sabra06G0166100 GWHAAZH00000006 + View
Salix brachista Sabra16G0089500 GWHAAZH00000016 + View
Sechium edule Sed0025451 LG07 - View
Solanum lycopersicum Solyc09g005980.4 Serine/arginine-rich-splicing factor RS2Z32 (AHRD V3.3 *-* A0A0M9UMT6_NICAT) SL4.0ch09 + View
Solanum lycopersicum Solyc05g054920.4 Serine/arginine-rich-splicing factor RS2Z32 (AHRD V3.3 *-* A0A0M8KRK6_NICAT) SL4.0ch05 + View
Schrenkiella parvula Sp4g19660 KOG0114//KOG4207 - Predicted RNA-binding protein (RRM superfamily) // Predicted splicing factor, SR protein superfamily ch4-6 - View
Schrenkiella parvula Sp6g39870 PF00098//PF13893 - Zinc knuckle (zf-CCHC) // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5) ch6-6 - View
Solanum pennellii Sopen05g033380 encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks. | arginine/serine-rich zinc knuckle-containing protein 33 (RSZ33) | FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding | INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome, RNA splicing | LOCATED IN: nuclear speck | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , Zinc finger, CCHC-type , Zinc finger, CCHC retroviral-type | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain Spenn-ch05 + View
Solanum pennellii Sopen09g001840 encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks. | arginine/serine-rich zinc knuckle-containing protein 33 (RSZ33) | FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding | INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome, RNA splicing | LOCATED IN: nuclear speck | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , Zinc finger, CCHC-type , Zinc finger, CCHC retroviral-type | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain Spenn-ch09 + View
Solanum tuberosum PGSC0003DMG400023919 Arginine/serine-rich splicing factor ST4.03ch09 - View
Solanum tuberosum PGSC0003DMG402023504 Arginine/serine-rich splicing factor ST4.03ch05 + View
Selenicereus undatus Hund22436 Scaffold_33680 + View
Trochodendron aralioides TAR636G0593 group1 - View
Trochodendron aralioides TAR623G1333 group7 - View
Trochodendron aralioides TAR633G0383 group2 + View
Theobroma cacao Thecc.05G049000 Chromosome_5 + View
Tarenaya hassleriana THA.LOC104826998 serine/arginine-rich splicing factor RS2Z32-like isoform X1 NW_010967707.1 - View
Tarenaya hassleriana THA.LOC104805359 serine/arginine-rich splicing factor RS2Z33-like isoform X1 NW_010960187.1 - View
Trifolium pratense TPR.G36918 Tp57577_TGAC_v2_LG1 - View
Tripterygium wilfordii TWI53G0760 NC_052244.1 - View
Tripterygium wilfordii TWI74G0490 NC_052234.1 + View
Vaccinium macrocarpon vmacro20096 Similar to RS2Z32: Serine/arginine-rich splicing factor RS2Z32 (Arabidopsis thaliana OX%3D3702) chr5_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1383G3127 CM024070.1 + View
Vitis vinifera GSVIVG01025581001 chr8 + View
Vitis vinifera GSVIVG01032633001 chr13 - View