Gene: AT2G37340

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G37340
  • Transcript Identifier AT2G37340.3
  • Gene Type Coding gene
  • Location Chr2 : 15670372-15671584 : negative

Gene Family Information

  • ID HOM05D002912
  • #Genes/#Species 237/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G37340.3
  • symbol RS2Z33
  • Alias AT-RS2Z33,arginine/serine-rich zinc knuckle-containing protein 33,ATRSZ33,ARGININE/SERINE-RICH ZINC KNUCKLE-CONTAINING PROTEIN 33,RSZ33,arginine/serine-rich zinc knuckle-containing protein 33
  • uniprot Q8VYA5

Descriptions

  • Description arginine/serine-rich zinc knuckle-containing protein 33
  • Computational description arginine/serine-rich zinc knuckle-containing protein 33 (RSZ33); FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (TAIR:AT3G53500.2); Has 128112 Blast hits to 126672 proteins in 4377 species: Archae - 175; Bacteria - 14621; Metazoa - 47197; Fungi - 12494; Plants - 32367; Viruses - 521; Other Eukaryotes - 20737 (source: NCBI BLink).
  • Computational description arginine/serine-rich zinc knuckle-containing protein 33 (RSZ33); FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (TAIR:AT3G53500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
TAS
Gene OntologymRNA splicing, via spliceosome1 2
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0008380
NAS
Gene OntologyRNA splicing3
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0000245
TAS
Gene Ontologyspliceosomal complex assembly1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003729
IDA
IBA
Gene OntologymRNA binding2 4
GO:0003723
IBA
Gene OntologyRNA binding2
GO:0005515
IPI
Gene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0016607
IEA
GOA Databasenuclear speck
GO:0016607
IDA
IBA
Gene Ontologynuclear speck2 5
GO:0005829
RCA
Gene Ontologycytosol6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR001878 Zinc finger, CCHC-type
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR036875 Zinc finger, CCHC-type superfamily
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.2.6.5 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (RSZ32/33)