Gene: Carub.0005s2007

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0005s2007
  • Transcript Identifier Carub.0005s2007.1
  • Gene Type Coding gene
  • Location scaffold_5 : 9982796-9984684 : negative

Gene Family Information

  • ID HOM05D002912
  • #Genes/#Species 237/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0005s2007.v1.1
  • pacid 39226039
  • synonym Carubv10019350m.g

Descriptions

  • Description PF00076//PF00098//PF13893 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc knuckle (zf-CCHC) // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5)
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
ISO
PLAZA Integrative OrthologymRNA splicing, via spliceosome AT3G53500

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G53500

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR036875 Zinc finger, CCHC-type superfamily
IPR000504 RNA recognition motif domain
IPR001878 Zinc finger, CCHC-type
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.2.6.5 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (RSZ32/33)