Gene: Sopen05g033380

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g033380
  • Transcript Identifier Sopen05g033380.1
  • Gene Type Coding gene
  • Location Spenn-ch05 : 76717293-76719976 : positive

Gene Family Information

  • ID HOM05D002912
  • #Genes/#Species 237/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g033380.1

Descriptions

  • Description encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks. | arginine/serine-rich zinc knuckle-containing protein 33 (RSZ33) | FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding | INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome, RNA splicing | LOCATED IN: nuclear speck | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , Zinc finger, CCHC-type , Zinc finger, CCHC retroviral-type | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000245
ISO
PLAZA Integrative Orthologyspliceosomal complex assembly AT2G37340
GO:0000398
ISO
PLAZA Integrative OrthologymRNA splicing, via spliceosome AT3G53500

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
InterProzinc ion binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G37340
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G53500

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT2G37340

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036875 Zinc finger, CCHC-type superfamily
IPR001878 Zinc finger, CCHC-type
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.2.6.5 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (RSZ32/33)