Gene: CiPaw.01G279300

General Information

Structural Information

  • Species Carya illinoinensis
  • Gene Identifier CiPaw.01G279300
  • Transcript Identifier CiPaw.01G279300.1
  • Gene Type Coding gene
  • Location Chr01 : 55315709-55318425 : negative

Gene Family Information

  • ID HOM05D002912
  • #Genes/#Species 237/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id CiPaw.01G279300.v1.1
  • pacid 45834781
  • locus Caril.01G276500

Descriptions

  • Description KOG0106//KOG0107 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) // Alternative splicing factor SRp20/9G8 (RRM superfamily)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000245
ISO
PLAZA Integrative Orthologyspliceosomal complex assembly AT2G37340
GO:0000398
ISO
PLAZA Integrative OrthologymRNA splicing, via spliceosome AT2G37340

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
InterProzinc ion binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G37340
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G37340

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT2G37340

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001878 Zinc finger, CCHC-type
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR036875 Zinc finger, CCHC-type superfamily
Mapman id Description
16.2.6.5 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (RSZ32/33)