Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0033564 PREDICTED: histone deacetylase HDT1-like [Sesamum indicum] Chr13 - View
CSS0049493 PREDICTED: histone deacetylase HDT1 [Sesamum indicum] Chr10 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G12970 LG-1 - View
Acer truncatum Atru.chr8.1641 chr8 + View
Acer truncatum Atru.chr3.3388 chr3 + View
Actinidia chinensis Actinidia07209 Lachesis_group13 + View
Arabidopsis lyrata AL4G22390 scaffold_4 - View
Arabidopsis lyrata AL6G33680 scaffold_6 + View
Avicennia marina MSTRG.21067 ScioBoG_26769_HRSCAF_26899 + View
Avicennia marina MSTRG.18730 ScioBoG_22153_HRSCAF_22259 - View
Amaranthus hybridus Ah.01g016800 AmaHy_arrow1_Scaffold_1 + View
Aquilegia oxysepala Aqoxy1G00951 CHR01 + View
Aquilegia oxysepala Aqoxy2G01426 CHR02 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.DY7VNH PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED arahy.Tifrunner.gnm1.Arahy.18 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.VS5FH3 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED arahy.Tifrunner.gnm1.Arahy.13 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.63G8L5 K11276 - nucleophosmin 1 (NPM1) arahy.Tifrunner.gnm1.Arahy.08 - View
Arabidopsis thaliana AT5G03740 histone deacetylase 2C HD2-type histone deacetylase HDAC. Involved in the ABA and stress responses. Mediates transcriptional repression histone deacetylase 2C (HD2C)%3B FUNCTIONS IN: histone deacetylase activity%2C transcription repressor activity%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: response to water deprivation%2C response to salt stress%2C response to abscisic acid stimulus%3B LOCATED IN: nucleolus%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C2H2-like (InterPro:IPR015880)%2C Zinc finger%2C C2H2-type (InterPro:IPR007087)%3B BEST Arabidopsis thaliana protein match is: histone deacetylase 3 (TAIR:AT3G44750.2)%3B Has 47549 Blast hits to 20091 proteins in 1212 species: Archae - 111%3B Bacteria - 17827%3B Metazoa - 12467%3B Fungi - 4889%3B Plants - 1882%3B Viruses - 518%3B Other Eukaryotes - 9855 (source: NCBI BLink). Chr5 + View
Arabidopsis thaliana AT2G27840 histone deacetylase-related / HD-like protein Belongs to the plant specific HD2 type proteins%3B similar to nucleolar Zea mays histone deacetylase%3B HD2-p39 HDT4%3B FUNCTIONS IN: histone deacetylase activity%3B INVOLVED IN: production of siRNA involved in RNA interference%3B LOCATED IN: nucleolus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: histone deacetylase 3 (TAIR:AT3G44750.2)%3B Has 818 Blast hits to 747 proteins in 183 species: Archae - 0%3B Bacteria - 171%3B Metazoa - 199%3B Fungi - 55%3B Plants - 177%3B Viruses - 17%3B Other Eukaryotes - 199 (source: NCBI BLink). Chr2 + View
Arabidopsis thaliana AT5G22650 histone deacetylase 2B Encodes a member of a plant-specific class of histone deacetylases. Controls the development of adaxial/abaxial leaf polarity. Its mRNA is widely expressed in stems%2C leaves%2C flowers and young siliques. Plant lines expressing RNAi constructs directed against this gene showed a marked reduction in agrobacterium-mediated root transformation. histone deacetylase 2B (HD2B)%3B FUNCTIONS IN: histone deacetylase activity%3B INVOLVED IN: DNA mediated transformation%2C negative regulation of transcription%2C polarity specification of adaxial/abaxial axis%3B LOCATED IN: cytosol%2C nucleolus%2C cell wall%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: histone deacetylase 3 (TAIR:AT3G44750.1)%3B Has 67941 Blast hits to 34482 proteins in 1815 species: Archae - 206%3B Bacteria - 15660%3B Metazoa - 22478%3B Fungi - 9360%3B Plants - 3234%3B Viruses - 784%3B Other Eukaryotes - 16219 (source: NCBI BLink). Chr5 + View
Brassica carinata BcaC03g13902 ChrC03 + View
Brassica carinata BcaC02g08226 ChrC02 - View
Brassica carinata BcaB08g36411 ChrB08 - View
Brassica carinata BcaB05g22708 ChrB05 - View
Brassica napus C09p53920 C09 - View
Brassica napus A04p21170 A04 + View
Brassica napus C02p11070 C02 + View
Brassica oleracea BolC2t07179H C2 + View
Brassica rapa BraA04t17686Z A04 + View
Brassica rapa BraA10t43903Z A10 - View
Beta vulgaris EL10Ac9g21071 PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATED Chr9_EL10_PGA_scaffold8 - View
Beta vulgaris EL10Ac7g16997 PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATED Chr7_EL10_PGA_scaffold5 + View
Capsicum annuum CAN.G824.24 PGAv.1.6.scaffold824 - View
Capsicum annuum CAN.G644.35 PGAv.1.6.scaffold644 + View
Cannabis sativa CANSAT54G1531 NC_044375.1 + View
Cannabis sativa CANSAT80G0408 NC_044372.1 - View
Cicer arietinum L. Ca_08965_v3 Ca_LG3_v3 - View
Cicer arietinum L. Ca_19368_v3 Ca_LG6_v3 - View
Cicer arietinum L. Ca_01682_v3 Ca_LG1_v3 + View
Corylus avellana Haze_19531 Similar to HDT1: Histone deacetylase HDT1 (Glycine max OX%3D3847) 10 - View
Corylus avellana Haze_23455 Similar to HDT1: Histone deacetylase HDT1 (Solanum chacoense OX%3D4108) 6 + View
Coffea canephora Cc06_g05190 Histone deacetylase HDT1 chr6 - View
Coffea canephora Cc01_g09850 Putative Histone deacetylase HDT3 chr1 + View
Citrus clementina Ciclev10012182m.g scaffold_6 + View
Citrus clementina Ciclev10028932m.g scaffold_8 + View
Ceratophyllum demersum CDE06G2425 4 + View
Cardamine hirsuta CARHR190930 histone deacetylase 2B Chr6 - View
Cardamine hirsuta CARHR120540 histone deacetylase-related / HD-related Chr4 + View
Carya illinoinensis CiPaw.09G008200 PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATED Chr09 - View
Carya illinoinensis CiPaw.13G141200 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED Chr13 + View
Carya illinoinensis CiPaw.14G103900 PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATED Chr14 + View
Citrullus lanatus ClCG02G021880 histone deacetylase 3 LENGTH=245 CG_Chr02 - View
Citrullus lanatus ClCG10G019420 Histone deacetylase 2a, putative CG_Chr10 + View
Cucumis melo MELO3C009430.2 histone deacetylase HDT1 chr04 + View
Cucumis melo MELO3C021457.2 histone deacetylase HDT1-like chr11 - View
Carica papaya Cpa.g.sc47.60 supercontig_47 + View
Carica papaya Cpa.g.sc5.85 supercontig_5 + View
Chenopodium quinoa AUR62038296 HDT1: Histone deacetylase HDT1 C_Quinoa_Scaffold_2169 - View
Chenopodium quinoa AUR62033584 HDT1: Histone deacetylase HDT1 C_Quinoa_Scaffold_1776 + View
Capsella rubella Carub.0006s0266 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED scaffold_6 + View
Capsella rubella Carub.0005s1044 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED scaffold_5 + View
Capsella rubella Carub.0006s2037 PF03066 - Nucleoplasmin (Nucleoplasmin) scaffold_6 + View
Capsella rubella Carub.0004s0860 3.5.1.98 - Histone deacetylase / HDAC scaffold_4 + View
Cucumis sativus L. CsaV3_6G014670 histone deacetylase HDT1-like chr6 - View
Cucumis sativus L. CsaV3_3G036760 histone deacetylase HDT1 chr3 - View
Daucus carota DCAR_018742 hypothetical protein DCARv2_Chr5 - View
Davidia involucrata Dinv19823 GWHABJS00000015 - View
Davidia involucrata Dinv21263 GWHABJS00000021 + View
Davidia involucrata Dinv29421 GWHABJS00000007 + View
Durio zibethinus Duzib093G2204 NW_019167937.1 + View
Durio zibethinus Duzib170G0280 NW_019167871.1 + View
Durio zibethinus Duzib168G1452 NW_019168159.1 + View
Durio zibethinus Duzib150G0178 NW_019167882.1 - View
Erigeron canadensis ECA233G1515 Conyza_canadensis_scaffold:1 + View
Eucalyptus grandis Eucgr.J00421 Chr10 - View
Erythranthe guttata Migut.J00993 scaffold_10 + View
Erythranthe guttata Migut.D02332 scaffold_4 - View
Eutrema salsugineum Thhalv10014245m.g PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED scaffold_2 + View
Eutrema salsugineum Thhalv10014266m.g PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED scaffold_2 + View
Fragaria x ananassa FAN05G5765 PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATED Fvb6-3 + View
Fragaria x ananassa FAN09G2940 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED Fvb6-2 + View
Fragaria x ananassa FAN05G4964 PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATED Fvb6-3 + View
Fragaria x ananassa FAN21G2741 PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATED Fvb3-2 + View
Fragaria x ananassa FAN11G2589 PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATED Fvb3-4 - View
Fragaria x ananassa FAN14G1368 PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATED Fvb6-1 - View
Fragaria x ananassa FAN16G0056 PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATED Fvb3-3 + View
Fragaria vesca FvH4_3g29940 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED Fvb3 + View
Gossypium hirsutum Gohir.A09G092600 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED A09 - View
Gossypium hirsutum Gohir.A01G209500 PF03066 - Nucleoplasmin (Nucleoplasmin) A01 + View
Gossypium hirsutum Gohir.D05G086900 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED D05 - View
Gossypium hirsutum Gohir.D09G092700 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED D09 - View
Gossypium hirsutum Gohir.A05G084101 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED A05 - View
Gossypium hirsutum Gohir.D01G198600 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED D01 + View
Glycine max Glyma.12G181400 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED Gm12 - View
Glycine max Glyma.11G189500 K11276 - nucleophosmin 1 (NPM1) Gm11 + View
Glycine max Glyma.03G190700 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED Gm03 - View
Glycine max Glyma.12G084700 3.5.1.98 - Histone deacetylase / HDAC Gm12 - View
Glycine max Glyma.13G319500 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED Gm13 + View
Glycine max Glyma.19G191000 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED Gm19 - View
Gossypium raimondii Gorai.002G242800 Chr02 + View
Gossypium raimondii Gorai.006G109300 Chr06 - View
Helianthus annuus HanXRQChr02g0054811 Uncharacterized protein, partly supported by expression data HanXRQChr02 - View
Lupinus albus Lalb_Chr20g0112191 PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATED Lalb_Chr20 + View
Lupinus albus Lalb_Chr24g0395111 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED Lalb_Chr24 - View
Lupinus albus Lalb_Chr14g0374221 PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATED Lalb_Chr14 + View
Lupinus albus Lalb_Chr22g0350611 PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATED Lalb_Chr22 - View
Lotus japonicus Lj3g0018637 PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATED chr3 - View
Lotus japonicus Lj1g0014712 PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATED chr1 + View
Lotus japonicus Lj3g0001709 K11276 - nucleophosmin 1 (NPM1) chr3 + View
Lonicera japonica Lj2A995T21 GWHAAZE00000002 + View
Lonicera japonica Lj2C128T7 GWHAAZE00000002 - View
Lactuca sativa Lsat_1_v5_gn_6_42560 Lsat_1_v8_lg_6 + View
Magnolia biondii MBI17_g11106_MAGBIO AED:0.07 Chr17 + View
Magnolia biondii MBI01_g22509_MAGBIO AED:0.60 Chr01 + View
Malus domestica MD11G1156500 histone deacetylase 2C Chr11 - View
Malus domestica MD03G1134300 histone deacetylase 3 Chr03 - View
Malus domestica MD14G1014900 histone deacetylase 2C Chr14 - View
Manihot esculenta Manes.11G156700 Chromosome11 - View
Manihot esculenta Manes.09G060536 Chromosome09 + View
Manihot esculenta Manes.04G009200 Chromosome04 + View
Medicago truncatula Medtr2g084815 histone deacetylase 2a, putative chr2 + View
Medicago truncatula Medtr4g055440 histone deacetylase HDT2, putative chr4 + View
Nelumbo nucifera Nn2g13988 chr2 - View
Petunia axillaris Peaxi162Scf00789g00531 histone deacetylase 3 Peaxi162Scf00789 - View
Punica granatum PGR119G1578 NC_045132.1 + View
Punica granatum PGR102G0030 NC_045129.1 - View
Prunus persica Prupe.7G118500 Pp07 + View
Prunus persica Prupe.6G118700 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED Pp06 - View
Pisum sativum Psat5g254240 Zinc finger C2H2 type domain profile. chr5LG3 + View
Pisum sativum Psat7g190640 Transition metal ion binding chr7LG7 + View
Papaver somniferum PSO384G0416 NC_039368.1 + View
Papaver somniferum PSO063G4060 NC_039364.1 - View
Papaver somniferum PSO339G0838 NC_039366.1 - View
Populus trichocarpa Potri.009G149400 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED Chr09 + View
Populus trichocarpa Potri.006G116500 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED Chr06 + View
Populus trichocarpa Potri.004G188800 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED Chr04 + View
Phaseolus vulgaris Phvul.005G127600 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED Chr05 + View
Phaseolus vulgaris Phvul.011G090000 K11276 - nucleophosmin 1 (NPM1) Chr11 - View
Phaseolus vulgaris Phvul.001G186300 PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED Chr01 - View
Quercus lobata QL07p040656 7 + View
Rosa chinensis RcHm_v2.0_Chr3g0472041 RcHm_v2.0_Chr3 - View
Rosa chinensis RcHm_v2.0_Chr5g0055321 RcHm_v2.0_Chr5 + View
Rhododendron simsii Rhsim03G0081700 chr03 + View
Rhododendron simsii Rhsim13G0105400 chr13 + View
Rhododendron simsii Rhsim01G0208600 chr01 + View
Striga asiatica SGA_v2.0_scaffold27G11605 scaffold27 + View
Striga asiatica SGA_v2.0_scaffold40G15411 scaffold40 + View
Striga asiatica SGA_v2.0_scaffold75G24799 scaffold75 + View
Salvia bowleyana SalBow3G0353 GWHASIU00000006 + View
Salix brachista Sabra09G0118000 GWHAAZH00000009 + View
Salix brachista Sabra04G0129300 GWHAAZH00000004 - View
Salix brachista Sabra06G0090900 GWHAAZH00000006 + View
Simmondsia chinensis Sc21g0004690 GWHAASQ00000021 - View
Sechium edule Sed0023502 LG05 + View
Sechium edule Sed0011854 LG01 - View
Sechium edule Sed0003899 LG04 - View
Solanum lycopersicum Solyc11g066840.3 Histone deacetylase HDT1 (AHRD V3.3 *** A0A2G2VQ39_CAPBA) SL4.0ch11 - View
Schrenkiella parvula Sp6g38980 PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATED ch6-6 - View
Schrenkiella parvula Sp6g22690 PTHR31802//PTHR31802:SF5 - FAMILY NOT NAMED // HISTONE DEACETYLASE HDT2-RELATED ch6-6 - View
Solanum pennellii Sopen11g026550 Encodes a histone deacetylase. Controls the development of adaxial/abaxial leaf polarity. Two lines with RNAi-directed against this gene show reduced Agrobacterium-mediated DNA transformation of the roots. | histone deacetylase 3 (HDA3) | CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type , Nucleoplasmin | BEST Arabidopsis thaliana protein match is: histone deacetylase 2B ., Histone deacetylase 2a (HD2a) (Nucleolar histone deacetylase HD2-p39) - Glycine max (Soybean) Spenn-ch11 - View
Solanum tuberosum PGSC0003DMG400002684 Histone deacetylase HDT1 ST4.03ch09 + View
Solanum tuberosum PGSC0003DMG400026532 Deacetylase ST4.03ch11 - View
Selenicereus undatus Hund00791 Scaffold_33678 + View
Trochodendron aralioides TAR369G0885 group18 - View
Trochodendron aralioides TAR633G0649 group2 + View
Trochodendron aralioides TAR636G1096 group1 - View
Theobroma cacao Thecc.05G080400 Histone deacetylase 2C Chromosome_5 - View
Theobroma cacao Thecc.09G292300 Histone deacetylase 2C Chromosome_9 + View
Tarenaya hassleriana THA.LOC104810899 histone deacetylase HDT1-like isoform X1 NW_010965304.1 - View
Tarenaya hassleriana THA.LOC104800559 histone deacetylase HDT1 isoform X1 NW_010969548.1 + View
Tarenaya hassleriana THA.LOC104799534 histone deacetylase HDT1-like isoform X1 NW_010968505.1 - View
Trifolium pratense TPR.G32379 Tp57577_TGAC_v2_scaf_195 - View
Tripterygium wilfordii TWI79G0547 NC_052238.1 - View
Tripterygium wilfordii TWI75G0541 NC_052253.1 - View
Tripterygium wilfordii TWI31G0812 NC_052233.1 - View
Vaccinium macrocarpon vmacro14374 Similar to HDT1: Histone deacetylase HDT1 (Glycine max OX%3D3847) chr7_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro03280 Similar to HDT1: Histone deacetylase HDT1 (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1080G0825 CM024079.1 - View
Vigna mungo VMungo1127G1742 CM024076.1 - View
Vigna mungo VMungo1383G2827 CM024070.1 - View
Vitis vinifera GSVIVG01031404001 chr6 - View
Vitis vinifera GSVIVG01033775001 chr8 + View