Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G520 LG-2 - View
Acer truncatum Atru.chr9.1533 chr9 - View
Actinidia chinensis Actinidia05231 Lachesis_group20 + View
Arabidopsis lyrata AL2G12580 scaffold_2 + View
Avicennia marina MSTRG.25571 ScioBoG_4119_HRSCAF_4138 - View
Amaranthus hybridus Ah.12g057750 DNA-directed RNA polymerase IV subunit 1 (DNA-directed RNA polymerase D subunit 1) (AtNRPD1a) (Nuclear RNA polymerase D 1a) (EC 2.7.7.6) (Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 3) (Protein SILENCING DEFECTIVE 4) (Protein SILENCING MOVEMENT DEFICIENT 2) (RNA polymerase IV subunit 1a) (POL IV 1a) AmaHy_arrow1_Scaffold_12 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.WX3P41 K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) arahy.Tifrunner.gnm1.Arahy.05 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.RU3ERW K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) arahy.Tifrunner.gnm1.Arahy.15 + View
Arabidopsis thaliana AT1G63020 nuclear RNA polymerase D1A Encodes one of two alternative largest subunits of a putative plant-specific RNA polymerase IV (aka RNA polymerase D). Required for posttranscriptional gene silencing. nuclear RNA polymerase D1A (NRPD1A)%3B FUNCTIONS IN: DNA-directed RNA polymerase activity%2C DNA binding%3B INVOLVED IN: in 7 processes%3B LOCATED IN: nucleus%2C DNA-directed RNA polymerase IV complex%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA polymerase%2C N-terminal (InterPro:IPR006592)%2C RNA polymerase%2C alpha subunit (InterPro:IPR000722)%2C RNA polymerase Rpb1%2C domain 3 (InterPro:IPR007066)%2C RNA polymerase Rpb1%2C domain 1 (InterPro:IPR007080)%2C RNA polymerase Rpb1%2C domain 4 (InterPro:IPR007083)%2C Protein of unknown function DUF3223 (InterPro:IPR021602)%2C RNA polymerase Rpb1%2C domain 5 (InterPro:IPR007081)%3B BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase D1B (TAIR:AT2G40030.1)%3B Has 18758 Blast hits to 17462 proteins in 6889 species: Archae - 580%3B Bacteria - 5923%3B Metazoa - 1639%3B Fungi - 1387%3B Plants - 5197%3B Viruses - 287%3B Other Eukaryotes - 3745 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaC06g31930 ChrC06 - View
Brassica carinata BcaC04g22731 ChrC04 + View
Brassica napus A09p13380 A09 - View
Brassica napus C09p15860 C09 - View
Brassica rapa BraA09t36984Z A09 - View
Beta vulgaris EL10Ac5g12720 K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) Chr5_EL10_PGA_scaffold2 - View
Capsicum annuum CAN.G981.44 PGAv.1.6.scaffold981 + View
Cicer arietinum L. Ca_06663_v3 Ca_LG3_v3 + View
Corylus avellana Haze_08958 Similar to NRPD1: DNA-directed RNA polymerase IV subunit 1 (Arabidopsis thaliana OX%3D3702) 4 + View
Coffea canephora Cc08_g13910 Putative DNA-directed RNA polymerase D subunit 1 chr8 - View
Citrus clementina Ciclev10018489m.g scaffold_3 - View
Carpinus fangiana Cfa012094 Cfa05 - View
Cardamine hirsuta CARHR048610 DNA-directed RNA polymerase Chr2 + View
Carya illinoinensis CiPaw.12G099100 PTHR19376//PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE // DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 Chr12 + View
Citrullus lanatus ClCG10G003630 DNA-directed RNA polymerase IV subunit 1 CG_Chr10 - View
Carica papaya Cpa.g.sc29.14 supercontig_29 + View
Chenopodium quinoa AUR62017301 NRPD1: DNA-directed RNA polymerase IV subunit 1 C_Quinoa_Scaffold_3489 + View
Chenopodium quinoa AUR62010662 NRPD1: DNA-directed RNA polymerase IV subunit 1 C_Quinoa_Scaffold_1280 + View
Capsella rubella Carub.0002s0198 K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) scaffold_2 + View
Cucumis sativus L. CsaV3_3G003630 DNA-directed RNA polymerase subunit chr3 - View
Daucus carota DCAR_006765 hypothetical protein DCARv2_Chr2 + View
Daucus carota DCAR_008426 hypothetical protein DCARv2_Chr2 + View
Davidia involucrata Dinv39017 GWHABJS00000003 + View
Davidia involucrata Dinv37697 GWHABJS00000017 + View
Erigeron canadensis ECA246G3981 Conyza_canadensis_scaffold:8 + View
Eucalyptus grandis Eucgr.D01929 Chr04 + View
Erythranthe guttata Migut.A00916 scaffold_1 - View
Eutrema salsugineum Thhalv10023214m.g K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) scaffold_8 + View
Fragaria x ananassa FAN18G2520 K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) Fvb5-1 - View
Fragaria x ananassa FAN20G0515 PF11523 - Protein of unknown function (DUF3223) (DUF3223) Fvb2-3 + View
Fragaria x ananassa FAN24G1516 PF11523 - Protein of unknown function (DUF3223) (DUF3223) Fvb2-2 + View
Fragaria x ananassa FAN04G1469 K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) Fvb5-4 - View
Fragaria x ananassa FAN13G2476 PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 Fvb5-2 - View
Fragaria x ananassa FAN08G3600 K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) Fvb5-3 + View
Fragaria vesca FvH4_5g01400 K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) Fvb5 - View
Gossypium hirsutum Gohir.D08G196600 K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) D08 - View
Gossypium hirsutum Gohir.A11G021201 PTHR19376//PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE // DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 A11 - View
Gossypium hirsutum Gohir.A08G178200 K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) A08 - View
Gossypium hirsutum Gohir.D11G020833 PF11523 - Protein of unknown function (DUF3223) (DUF3223) D11 - View
Glycine max Glyma.11G026700 K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) Gm11 + View
Glycine max Glyma.01G215700 K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) Gm01 - View
Gossypium raimondii Gorai.004G207300 Chr04 - View
Gossypium raimondii Gorai.007G022200 Chr07 - View
Hydrangea macrophylla Hma1.2p1_0138F.1_g062630 Hma1.2p1_0138F.1 + View
Lupinus albus Lalb_Chr05g0225101 PTHR19376//PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE // DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 Lalb_Chr05 + View
Lupinus albus Lalb_Chr16g0377361 PF04990//PF04998//PF05001 - RNA polymerase Rpb1, domain 7 (RNA_pol_Rpb1_7) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1 C-terminal repeat (RNA_pol_Rpb1_R) Lalb_Chr16 - View
Lotus japonicus Lj2g0010994 K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) chr2 + View
Lonicera japonica Lj8C239G8 GWHAAZE00000008 + View
Lonicera japonica Lj2C197T6 GWHAAZE00000002 + View
Lactuca sativa Lsat_1_v5_gn_3_5900 Lsat_1_v8_lg_3 - View
Malus domestica MD06G1069300 nuclear RNA polymerase D1A Chr06 + View
Malus domestica MD04G1068800 nuclear RNA polymerase D1A Chr04 + View
Manihot esculenta Manes.02G028200 Chromosome02 + View
Medicago truncatula Medtr5g011000 DNA-directed RNA polymerase chr5 + View
Nicotiana tabacum Nitab4.5_0001714g0190 Protein of unknown function DUF3223, RNA polymerase Rpb1, domain 3, RNA polymerase Rpb1, domain 4, RNA polymerase, alpha subunit, RNA polymerase, N-terminal, Copper amine oxidase, N2/N3-terminal Nitab4.5_0001714 - View
Oryza sativa ssp. japonica Os04g0572600 Similar to DNA-directed RNA polymerase. Largest subunit of RNA polymerase IV (Pol IV) chr04 + View
Petunia axillaris Peaxi162Scf00620g00924 DNA-directed RNA polymerase IV subunit 1 Peaxi162Scf00620 - View
Punica granatum PGR031G2544 NC_045127.1 - View
Prunus persica Prupe.5G089300 K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) Pp05 - View
Pisum sativum Psat2g181400 RNA polymerase Rpb1 + domain 2 chr2LG1 - View
Papaver somniferum PSO782G2782 NC_039365.1 - View
Populus trichocarpa Potri.001G111300 K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) Chr01 + View
Phaseolus vulgaris Phvul.002G153700 Chr02 - View
Quercus lobata QL12p017019 12 - View
Rosa chinensis RcHm_v2.0_Chr7g0199481 RcHm_v2.0_Chr7 + View
Rhododendron simsii Rhsim07G0095300 chr07 + View
Salix brachista Sabra01G0084800 GWHAAZH00000001 + View
Salix brachista Sabra03G0084800 GWHAAZH00000003 - View
Solanum lycopersicum Solyc08g080220.3 DNA-directed RNA polymerase subunit (AHRD V3.3 *** A0A1U8G9I3_CAPAN) SL4.0ch08 - View
Schrenkiella parvula Sp2g01560 K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) ch2-1 + View
Solanum pennellii Sopen08g028570 Encodes one of two alternative largest subunits of a putative plant-specific RNA polymerase IV (aka RNA polymerase D). Required for posttranscriptional gene silencing. | nuclear RNA polymerase D1A (NRPD1A) | FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding | INVOLVED IN: in 7 processes | LOCATED IN: nucleus, DNA-directed RNA polymerase IV complex | EXPRESSED IN: 9 plant structures | EXPRESSED DURING: 6 growth stages | CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal , RNA polymerase, alpha subunit , RNA polymerase Rpb1, domain 3 , RNA polymerase Rpb1, domain 1 , RNA polymerase Rpb1, domain 4 , Protein of unknown function DUF3223 , RNA polymerase Rpb1, domain 5 | BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase D1B . Spenn-ch08 - View
Solanum tuberosum PGSC0003DMG400022753 DNA-directed RNA polymerase ST4.03ch08 - View
Selenicereus undatus Hund11530 Scaffold_10417 + View
Trochodendron aralioides TAR636G2974 group1 + View
Theobroma cacao Thecc.03G270300 DNA-directed RNA polymerase II subunit RPB1-B Chromosome_3 - View
Tarenaya hassleriana THA.LOC104809424 DNA-directed RNA polymerase IV subunit 1 isoform X1 NW_010965019.1 + View
Trifolium pratense TPR.G6660 Tp57577_TGAC_v2_LG2 - View
Tripterygium wilfordii TWI60G0610 NC_052246.1 + View
Tripterygium wilfordii TWI15G0190 NC_052247.1 - View
Vaccinium macrocarpon vmacro14006 Similar to NRPD1: DNA-directed RNA polymerase IV subunit 1 (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1215G3193 CM024074.1 + View
Vitis vinifera GSVIVG01019869001 chr2 + View