Gene: Sp2g01560
General Information
Structural Information
- Species Schrenkiella parvula
- Gene Identifier Sp2g01560
- Transcript Identifier Sp2g01560.1
- Gene Type Coding gene
- Location ch2-1 : 698463-704369 : positive
Gene Family Information
- ID HOM05D000228
- #Genes/#Species 1809/100
- Phylogenetic origin
- ID ORTHO05D006129
- #Genes/#Species 147/93
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Sp2g01560.v2.2
- pacid 45074512
Descriptions
- Description K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | InterPro | transcription, DNA-templated | |
| GO:0010495 | ISO | PLAZA Integrative Orthology | long-distance posttranscriptional gene silencing | AT1G63020 |
| GO:0031047 | ISO | PLAZA Integrative Orthology | gene silencing by RNA | AT1G63020 |
| GO:0030422 | ISO | PLAZA Integrative Orthology | production of siRNA involved in RNA interference | AT1G63020 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G63020 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G63020 |
| GO:0000418 | ISO | PLAZA Integrative Orthology | RNA polymerase IV complex | AT1G63020 |
| GO:0005654 | ISO | PLAZA Integrative Orthology | nucleoplasm | AT1G63020 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR006592 | RNA polymerase, N-terminal |
| IPR040403 | DNA-directed RNA polymerase IV/V subunit 1, N-terminal |
| IPR044893 | RNA polymerase Rpb1, clamp domain superfamily |
| IPR038120 | RNA polymerase Rpb1, funnel domain superfamily |
| IPR042102 | RNA polymerase Rpb1, domain 3 superfamily |
| IPR000722 | RNA polymerase, alpha subunit |
| IPR007083 | RNA polymerase Rpb1, domain 4 |
| IPR007066 | RNA polymerase Rpb1, domain 3 |
| Mapman id | Description |
|---|---|
| 15.1.4.1 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol IV catalytic components.subunit 1 |