Gene: Sopen08g028570

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen08g028570
  • Transcript Identifier Sopen08g028570.2
  • Gene Type Coding gene
  • Location Spenn-ch08 : 68071880-68081213 : negative

Gene Family Information

  • ID HOM05D000228
  • #Genes/#Species 1809/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen08g028570.2

Descriptions

  • Description Encodes one of two alternative largest subunits of a putative plant-specific RNA polymerase IV (aka RNA polymerase D). Required for posttranscriptional gene silencing. | nuclear RNA polymerase D1A (NRPD1A) | FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding | INVOLVED IN: in 7 processes | LOCATED IN: nucleus, DNA-directed RNA polymerase IV complex | EXPRESSED IN: 9 plant structures | EXPRESSED DURING: 6 growth stages | CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal , RNA polymerase, alpha subunit , RNA polymerase Rpb1, domain 3 , RNA polymerase Rpb1, domain 1 , RNA polymerase Rpb1, domain 4 , Protein of unknown function DUF3223 , RNA polymerase Rpb1, domain 5 | BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase D1B .
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0010495
ISO
PLAZA Integrative Orthologylong-distance posttranscriptional gene silencing AT1G63020
GO:0031047
ISO
PLAZA Integrative Orthologygene silencing by RNA AT1G63020
GO:0030422
ISO
PLAZA Integrative Orthologyproduction of siRNA involved in RNA interference AT1G63020

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003899
IEA
InterProDNA-directed 5'-3' RNA polymerase activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G63020

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G63020
GO:0000418
ISO
PLAZA Integrative OrthologyRNA polymerase IV complex AT1G63020
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT1G63020

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000722 RNA polymerase, alpha subunit
IPR040403 DNA-directed RNA polymerase IV/V subunit 1, N-terminal
IPR006592 RNA polymerase, N-terminal
IPR038120 RNA polymerase Rpb1, funnel domain superfamily
IPR040402 DNA-directed RNA polymerase IV/V subunit 1, C-terminal
IPR042102 RNA polymerase Rpb1, domain 3 superfamily
IPR007066 RNA polymerase Rpb1, domain 3
IPR007083 RNA polymerase Rpb1, domain 4
Mapman id Description
15.1.4.1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol IV catalytic components.subunit 1