Gene: Solyc08g080220.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc08g080220.3
- Transcript Identifier Solyc08g080220.3.1
- Gene Type Coding gene
- Location SL4.0ch08 : 61646227-61651030 : negative
Gene Family Information
- ID HOM05D000228
- #Genes/#Species 1809/100
- Phylogenetic origin
- ID ORTHO05D006129
- #Genes/#Species 147/93
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc08g080220.3.1
- uniprot A0A3Q7HVN8
- gene_id Solyc08g080220
Descriptions
- Description DNA-directed RNA polymerase subunit (AHRD V3.3 *** A0A1U8G9I3_CAPAN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030422 | ISO | PLAZA Integrative Orthology | production of siRNA involved in RNA interference | AT1G63020 |
| GO:0031047 | ISO | PLAZA Integrative Orthology | gene silencing by RNA | AT1G63020 |
| GO:0010495 | ISO | PLAZA Integrative Orthology | long-distance posttranscriptional gene silencing | AT1G63020 |
| GO:0006351 | IEA | GOA Database | transcription, DNA-templated | |
| GO:0006351 | IEA | InterPro | transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003899 | IBA IEA | GOA Database | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G63020 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0016779 | IEA | GOA Database | nucleotidyltransferase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005654 | ISO | PLAZA Integrative Orthology | nucleoplasm | AT1G63020 |
| GO:0000418 | ISO | PLAZA Integrative Orthology | RNA polymerase IV complex | AT1G63020 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G63020 |
| GO:0005666 | IBA | GOA Database | RNA polymerase III complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR042102 | RNA polymerase Rpb1, domain 3 superfamily |
| IPR007083 | RNA polymerase Rpb1, domain 4 |
| IPR040403 | DNA-directed RNA polymerase IV/V subunit 1, N-terminal |
| IPR038120 | RNA polymerase Rpb1, funnel domain superfamily |
| IPR000722 | RNA polymerase, alpha subunit |
| IPR006592 | RNA polymerase, N-terminal |
| IPR007066 | RNA polymerase Rpb1, domain 3 |
| Mapman id | Description |
|---|---|
| 15.1.4.1 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol IV catalytic components.subunit 1 |