Gene: Thecc.03G270300

General Information

Structural Information

  • Species Theobroma cacao
  • Gene Identifier Thecc.03G270300
  • Transcript Identifier Thecc.03G270300.1
  • Gene Type Coding gene
  • Location Chromosome_3 : 32635743-32648223 : negative

Gene Family Information

  • ID HOM05D000228
  • #Genes/#Species 1809/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Thecc.03G270300.v2.1
  • pacid 42000988
  • ancestorIdentifier Thecc1EG016168.CGDv1.1
  • ancestorIdentifier Thecc1EG016168t1.CGDv1.1

Descriptions

  • Description DNA-directed RNA polymerase II subunit RPB1-B
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0010495
ISO
PLAZA Integrative Orthologylong-distance posttranscriptional gene silencing AT1G63020
GO:0031047
ISO
PLAZA Integrative Orthologygene silencing by RNA AT1G63020
GO:0030422
ISO
PLAZA Integrative Orthologyproduction of siRNA involved in RNA interference AT1G63020

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003899
IEA
InterProDNA-directed 5'-3' RNA polymerase activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G63020

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G63020
GO:0000418
ISO
PLAZA Integrative OrthologyRNA polymerase IV complex AT1G63020
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT1G63020

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR042102 RNA polymerase Rpb1, domain 3 superfamily
IPR007081 RNA polymerase Rpb1, domain 5
IPR006592 RNA polymerase, N-terminal
IPR007083 RNA polymerase Rpb1, domain 4
IPR000722 RNA polymerase, alpha subunit
IPR007066 RNA polymerase Rpb1, domain 3
IPR038120 RNA polymerase Rpb1, funnel domain superfamily
IPR040403 DNA-directed RNA polymerase IV/V subunit 1, N-terminal
IPR044893 RNA polymerase Rpb1, clamp domain superfamily
Mapman id Description
15.1.4.1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol IV catalytic components.subunit 1