Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0006423 PREDICTED: putative nuclear matrix constituent protein 1-like protein isoform X2 [Vitis vinifera] Chr2 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G3600 LG-2 - View
Acer truncatum Atru.chr8.798 chr8 - View
Actinidia chinensis Actinidia14837 Lachesis_group14 - View
Actinidia chinensis Actinidia16605 Lachesis_group4 + View
Actinidia chinensis Actinidia17619 Lachesis_group21 + View
Actinidia chinensis Actinidia26291 Lachesis_group3 + View
Arabidopsis lyrata AL2G25750 scaffold_2 - View
Arabidopsis lyrata AL2G27740 scaffold_2 - View
Avicennia marina MSTRG.2942 ScioBoG_102835_HRSCAF_103059 + View
Avicennia marina MSTRG.23825 ScioBoG_3895_HRSCAF_3912 + View
Amaranthus hybridus Ah.10g037470 Protein CROWDED NUCLEI 1 (Protein KAKU2) (Protein LITTLE NUCLEI 1) AmaHy_arrow1_Scaffold_10 - View
Amaranthus hybridus Ah.16g102090 AmaHy_arrow1_Scaffold_16 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.EA1KYK PTHR31908:SF4 - F3F19.25 PROTEIN-RELATED arahy.Tifrunner.gnm1.Arahy.15 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.XPT71U PTHR31908//PTHR31908:SF3 - FAMILY NOT NAMED // PROTEIN LITTLE NUCLEI1 arahy.Tifrunner.gnm1.Arahy.14 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.W8DCP7 PTHR31908:SF4 - F3F19.25 PROTEIN-RELATED arahy.Tifrunner.gnm1.Arahy.05 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.EMYT0X PTHR31908//PTHR31908:SF3 - FAMILY NOT NAMED // PROTEIN LITTLE NUCLEI1 arahy.Tifrunner.gnm1.Arahy.04 - View
Arabidopsis thaliana AT1G67230 little nuclei1 Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure. LITTLE NUCLEI1 (LINC1)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: nucleus organization%3B LOCATED IN: cytosol%2C nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: nuclear matrix constituent protein-related (TAIR:AT1G13220.2)%3B Has 314297 Blast hits to 138342 proteins in 3965 species: Archae - 3454%3B Bacteria - 70538%3B Metazoa - 123746%3B Fungi - 25476%3B Plants - 17143%3B Viruses - 1173%3B Other Eukaryotes - 72767 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT1G68790 little nuclei3 LITTLE NUCLEI3 (LINC3)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: nucleolus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B BEST Arabidopsis thaliana protein match is: nuclear matrix constituent protein-related (TAIR:AT1G13220.2)%3B Has 314839 Blast hits to 141527 proteins in 3854 species: Archae - 3371%3B Bacteria - 67403%3B Metazoa - 125121%3B Fungi - 24709%3B Plants - 16322%3B Viruses - 1225%3B Other Eukaryotes - 76688 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaB05g24249 ChrB05 - View
Brassica carinata BcaC03g14819 ChrC03 - View
Brassica napus A02p14090 A02 - View
Brassica napus C02p22700 C02 - View
Brassica napus C06p43050 C06 + View
Brassica napus A02p15350 A02 - View
Brassica oleracea BolC2t08423H C2 - View
Brassica oleracea BolC6t39131H C6 - View
Brassica rapa BraA02t06472Z A02 - View
Beta vulgaris EL10Ac2g04618 PTHR31908//PTHR31908:SF3 - FAMILY NOT NAMED // PROTEIN LITTLE NUCLEI1 Chr2_EL10_PGA_scaffold6 + View
Capsicum annuum CAN.G497.7 PGAv.1.6.scaffold497 + View
Cannabis sativa CANSAT64G1104 NC_044379.1 + View
Corylus avellana Haze_14110 Similar to CRWN1: Protein CROWDED NUCLEI 1 (Arabidopsis thaliana OX%3D3702) 5 - View
Coffea canephora Cc07_g05040 Putative nuclear matrix constituent protein 1-like protein chr7 - View
Citrus clementina Ciclev10013467m.g scaffold_6 + View
Citrus clementina Ciclev10030538m.g scaffold_4 + View
Carpinus fangiana Cfa007959 Cfa03 + View
Carpinus fangiana Cfa018650 Cfa07 + View
Cardamine hirsuta CARHR059690 Nuclear matrix constituent-like protein 1 Chr2 - View
Cardamine hirsuta CARHR061610 nuclear matrix constituent protein-related Chr2 - View
Carya illinoinensis CiPaw.04G003600 PTHR31908//PTHR31908:SF3 - FAMILY NOT NAMED // PROTEIN LITTLE NUCLEI1 Chr04 + View
Carya illinoinensis CiPaw.03G005400 KOG0978//KOG4807 - E3 ubiquitin ligase involved in syntaxin degradation // F-actin binding protein, regulates actin cytoskeletal organization Chr03 + View
Citrullus lanatus ClCG11G005290 Nuclear matrix constituent-like protein 1 CG_Chr11 - View
Cucumis melo MELO3C022065.2 Nuclear matrix constituent protein 1 chr09 - View
Carica papaya Cpa.g.sc179.33 supercontig_179 - View
Chenopodium quinoa AUR62007744 CRWN2: Protein CROWDED NUCLEI 2 C_Quinoa_Scaffold_2646 + View
Chenopodium quinoa AUR62008955 CRWN1: Protein CROWDED NUCLEI 1 C_Quinoa_Scaffold_1710 + View
Capsella rubella Carub.0002s1535 KOG0978//KOG0982//KOG4568 - E3 ubiquitin ligase involved in syntaxin degradation // Centrosomal protein Nuf // Cytoskeleton-associated protein and related proteins scaffold_2 - View
Capsella rubella Carub.0002s1351 PTHR31908//PTHR31908:SF3 - FAMILY NOT NAMED // PROTEIN LITTLE NUCLEI1 scaffold_2 - View
Cucumis sativus L. CsaV3_5G039060 protein CROWDED NUCLEI 1 chr5 - View
Daucus carota DCAR_007520 hypothetical protein DCARv2_Chr2 + View
Daucus carota DCAR_010974 hypothetical protein DCARv2_Chr3 + View
Daucus carota DCAR_007220 hypothetical protein DCARv2_Chr2 - View
Davidia involucrata Dinv16523 GWHABJS00000008 + View
Davidia involucrata Dinv34858 GWHABJS00000012 + View
Durio zibethinus Duzib138G0922 NW_019167893.1 - View
Durio zibethinus Duzib251G0529 NW_019167971.1 + View
Erigeron canadensis ECA238G3630 Conyza_canadensis_scaffold:6 + View
Eucalyptus grandis Eucgr.J01462 Chr10 - View
Eucalyptus grandis Eucgr.G02361 Chr07 + View
Erythranthe guttata Migut.L01107 scaffold_12 + View
Erythranthe guttata Migut.H00533 scaffold_8 + View
Eutrema salsugineum Thhalv10018034m.g PTHR31908:SF3 - PROTEIN LITTLE NUCLEI1 scaffold_9 - View
Fragaria x ananassa FAN07G2260 KOG0982 - Centrosomal protein Nuf Fvb4-4 - View
Fragaria x ananassa FAN09G4253 PTHR31908//PTHR31908:SF3 - FAMILY NOT NAMED // PROTEIN LITTLE NUCLEI1 Fvb6-2 - View
Fragaria x ananassa FAN02G0241 KOG0978//KOG2370 - E3 ubiquitin ligase involved in syntaxin degradation // Cactin Fvb6-4 + View
Fragaria x ananassa FAN14G3399 KOG0978//KOG4809 - E3 ubiquitin ligase involved in syntaxin degradation // Rab6 GTPase-interacting protein involved in endosome-to-TGN transport Fvb6-1 - View
Fragaria x ananassa FAN22G2204 PTHR31908//PTHR31908:SF4 - FAMILY NOT NAMED // F3F19.25 PROTEIN-RELATED Fvb4-1 + View
Fragaria x ananassa FAN05G5792 PTHR31908//PTHR31908:SF3 - FAMILY NOT NAMED // PROTEIN LITTLE NUCLEI1 Fvb6-3 + View
Fragaria vesca FvH4_4g28241 PTHR31908:SF4 - F3F19.25 PROTEIN-RELATED Fvb4 + View
Fragaria vesca FvH4_6g45461 PTHR31908//PTHR31908:SF3 - FAMILY NOT NAMED // PROTEIN LITTLE NUCLEI1 Fvb6 + View
Gossypium hirsutum Gohir.D11G167400 KOG0978//KOG0995 - E3 ubiquitin ligase involved in syntaxin degradation // Centromere-associated protein HEC1 D11 + View
Gossypium hirsutum Gohir.A11G161100 KOG0978//KOG0995 - E3 ubiquitin ligase involved in syntaxin degradation // Centromere-associated protein HEC1 A11 + View
Glycine max Glyma.08G256300 PTHR31908//PTHR31908:SF3 - FAMILY NOT NAMED // PROTEIN LITTLE NUCLEI1 Gm08 - View
Glycine max Glyma.18G280500 PTHR31908//PTHR31908:SF3 - FAMILY NOT NAMED // PROTEIN LITTLE NUCLEI1 Gm18 - View
Gossypium raimondii Gorai.007G178500 Chr07 + View
Gossypium raimondii Gorai.001G200600 Chr01 + View
Helianthus annuus HanXRQChr14g0452321 Probable little nuclei1 HanXRQChr14 + View
Helianthus annuus HanXRQChr07g0200201 Uncharacterized protein, conserved in plant genome(s), supported by expression data HanXRQChr07 - View
Hydrangea macrophylla Hma1.2p1_0136F.1_g062050 Hma1.2p1_0136F.1 - View
Lupinus albus Lalb_Chr04g0255011 PTHR31908//PTHR31908:SF4 - FAMILY NOT NAMED // F3F19.25 PROTEIN-RELATED Lalb_Chr04 + View
Lupinus albus Lalb_Chr17g0336541 PTHR31908:SF3 - PROTEIN LITTLE NUCLEI1 Lalb_Chr17 + View
Lotus japonicus Lj1g0026501 PTHR31908//PTHR31908:SF3 - FAMILY NOT NAMED // PROTEIN LITTLE NUCLEI1 chr1 + View
Lonicera japonica Lj6C767T7 GWHAAZE00000006 + View
Lonicera japonica Lj7A9G80 GWHAAZE00000007 - View
Lactuca sativa Lsat_1_v5_gn_2_86661 PTHR31908:SF3 - PROTEIN LITTLE NUCLEI1 Lsat_1_v8_lg_2 + View
Malus domestica MD16G1049800 little nuclei1 Chr16 + View
Malus domestica MD13G1048500 little nuclei1 Chr13 + View
Malus domestica MD09G1082900 little nuclei1 Chr09 - View
Manihot esculenta Manes.01G107600 Chromosome01 - View
Manihot esculenta Manes.06G074000 Chromosome06 + View
Medicago truncatula Medtr7g018610 nuclear matrix constituent-like protein chr7 + View
Nicotiana tabacum Nitab4.5_0004420g0060 Unknown Nitab4.5_0004420 - View
Nicotiana tabacum Nitab4.5_0009272g0010 Unknown Nitab4.5_0009272 + View
Petunia axillaris Peaxi162Scf01056g00241 nuclear matrix constituent protein-related Peaxi162Scf01056 - View
Petunia axillaris Peaxi162Scf00479g00119 nuclear matrix constituent protein-related Peaxi162Scf00479 + View
Punica granatum PGR119G1444 NC_045132.1 + View
Punica granatum PGR042G1271 NC_045130.1 + View
Prunus persica Prupe.1G303700 Pp01 - View
Prunus persica Prupe.3G240800 PTHR31908:SF3 - PROTEIN LITTLE NUCLEI1 Pp03 + View
Pisum sativum Psat3g191560 Unknown gene chr3LG5 - View
Populus trichocarpa Potri.008G114800 PTHR31908:SF4 - F3F19.25 PROTEIN-RELATED Chr08 - View
Populus trichocarpa Potri.017G111400 PTHR31908//PTHR31908:SF3 - FAMILY NOT NAMED // PROTEIN LITTLE NUCLEI1 Chr17 - View
Phaseolus vulgaris Phvul.008G020600 PTHR31908:SF3 - PROTEIN LITTLE NUCLEI1 Chr08 + View
Quercus lobata QL02p053039 CM012294 + View
Rosa chinensis RcHm_v2.0_Chr2g0163401 RcHm_v2.0_Chr2 + View
Rosa chinensis RcHm_v2.0_Chr4g0436081 RcHm_v2.0_Chr4 + View
Rhododendron simsii Rhsim08G0079900 chr08 + View
Striga asiatica SGA_v2.0_scaffold204G41653 scaffold204 + View
Salvia bowleyana SalBow1G5670 GWHASIU00000001 - View
Salvia bowleyana SalBow1G6161 GWHASIU00000001 - View
Salix brachista Sabra08G0087000 GWHAAZH00000008 - View
Simmondsia chinensis Sc11g0008120 GWHAASQ00000011 - View
Simmondsia chinensis Sc11g0002990 GWHAASQ00000011 - View
Sechium edule Sed0026492 LG03 - View
Sechium edule Sed0011516 LG11 - View
Solanum lycopersicum Solyc02g089800.3 Nuclear matrix constituent-like protein 1 (AHRD V3.3 *** E5GCT1_CUCME) SL4.0ch02 - View
Solanum lycopersicum Solyc03g045050.4 Nuclear matrix constituent-like protein 1 (AHRD V3.3 *** E5GCT1_CUCME) SL4.0ch03 + View
Schrenkiella parvula Sp5g22170 PTHR31908//PTHR31908:SF3 - FAMILY NOT NAMED // PROTEIN LITTLE NUCLEI1 ch5-6 - View
Solanum pennellii Sopen02g034490 Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure. | LITTLE NUCLEI1 (LINC1) | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: nucleus organization | LOCATED IN: cytosol, nucleus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 13 growth stages | BEST Arabidopsis thaliana protein match is: nuclear matrix constituent protein-related Spenn-ch02 - View
Solanum pennellii Sopen03g009490 Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure. | LITTLE NUCLEI1 (LINC1) | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: nucleus organization | LOCATED IN: cytosol, nucleus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 13 growth stages | BEST Arabidopsis thaliana protein match is: nuclear matrix constituent protein-related Spenn-ch03 + View
Solanum tuberosum PGSC0003DMG400003363 DNA double-strand break repair rad50 ATPase ST4.03ch03 + View
Solanum tuberosum PGSC0003DMG402010047 DNA double-strand break repair rad50 ATPase ST4.03ch02 + View
Selenicereus undatus Hund25112 Scaffold_3410 + View
Selenicereus undatus Hund05774 Scaffold_19641 + View
Selenicereus undatus Hund13740 Scaffold_33679 + View
Trochodendron aralioides TAR629G0360 group0 - View
Trochodendron aralioides TAR371G0717 group13 + View
Trochodendron aralioides TAR622G0904 group8 + View
Theobroma cacao Thecc.04G140200 Nuclear matrix constituent protein 1-like protein Chromosome_4 + View
Theobroma cacao Thecc.02G363000 Nuclear matrix constituent protein-related Chromosome_2 + View
Tarenaya hassleriana THA.LOC104805555 protein CROWDED NUCLEI 1-like NW_010961290.1 + View
Tarenaya hassleriana THA.LOC104822178 protein CROWDED NUCLEI 3 NW_010966617.1 + View
Trifolium pratense TPR.G4495 Tp57577_TGAC_v2_LG7 - View
Tripterygium wilfordii TWI79G1631 NC_052238.1 + View
Tripterygium wilfordii TWI31G1272 NC_052233.1 + View
Utricularia gibba unitig_899.g15128 unitig_899 - View
Vaccinium macrocarpon vmacro18103 Similar to CRWN1: Protein CROWDED NUCLEI 1 (Arabidopsis thaliana OX%3D3702) chr3_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1383G0213 CM024070.1 + View
Vitis vinifera GSVIVG01011972001 chr1 - View