Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001377', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '454', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p04840' => 'bna', 'A02p14090' => 'bna', 'A02p15350' => 'bna', 'A06p08530' => 'bna', 'A07p33840' => 'bna', 'A07p35170' => 'bna', 'A09p09150' => 'bna', 'Aa31LG1G1390' => 'aar', 'Aa31LG1G16300' => 'aar', 'Aa31LG2G3600' => 'aar', 'Aa31LG2G3610' => 'aar', 'Aa31sc79G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5167' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.551' => 'aag', 'Actinidia11953' => 'ach', 'Actinidia13686' => 'ach', 'Actinidia13687' => 'ach', 'Actinidia13688' => 'ach', 'Actinidia14837' => 'ach', 'Actinidia14838' => 'ach', 'Actinidia14839' => 'ach', 'Actinidia16605' => 'ach', 'Actinidia17619' => 'ach', 'Actinidia26291' => 'ach', 'Actinidia26292' => 'ach', 'Actinidia36410' => 'ach', 'Actinidia36411' => 'ach', 'Actinidia38404' => 'ach', 'Ah.03g138000' => 'amhyb', 'Ah.10g037470' => 'amhyb', 'Ah.16g102090' => 'amhyb', 'AL1G24910' => 'aly', 'AL2G25750' => 'aly', 'AL2G27740' => 'aly', 'AL6G50880' => 'aly', 'AL8G43490' => 'aly', 'Aqoxy3G00643' => 'aox', 'Aqoxy3G02689_Aqoxy3G02690' => 'aox', 'Aqoxy3G03368' => 'aox', 'Aqoxy5G00825' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15YI41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CMW6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FD4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90HUEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98QD99' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AYA763' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP8NJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGXB7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0PK62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA1KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYT0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLH8ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN41X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL6B48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3TKD3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SERK2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8DCP7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPT71U' => 'arhy', 'AT1G13220' => 'ath', 'AT1G67230' => 'ath', 'AT1G68790' => 'ath', 'AT5G65770' => 'ath', 'AT5G65780' => 'ath', 'ATR0598G143' => 'atr', 'ATR0807G122' => 'atr', 'Atru.chr11.1383' => 'acertr', 'Atru.chr11.1384' => 'acertr', 'Atru.chr3.1079' => 'acertr', 'Atru.chr6.468' => 'acertr', 'Atru.chr6.469' => 'acertr', 'Atru.chr8.798' => 'acertr', 'AUR62002935' => 'cqu', 'AUR62003155' => 'cqu', 'AUR62007744' => 'cqu', 'AUR62007977' => 'cqu', 'AUR62008955' => 'cqu', 'BcaB03g15212' => 'bca', 'BcaB04g20027' => 'bca', 'BcaB05g24249' => 'bca', 'BcaB05g24250' => 'bca', 'BcaB05g24411' => 'bca', 'BcaC01g02835' => 'bca', 'BcaC03g14819' => 'bca', 'BcaC03g14987' => 'bca', 'BcaC04g23249' => 'bca', 'BcaC06g31708' => 'bca', 'BcaC08g46149' => 'bca', 'BolC2t08423H' => 'bol', 'BolC2t08598H' => 'bol', 'BolC3t18254H' => 'bol', 'BolC5t29759H' => 'bol', 'BolC6t39131H' => 'bol', 'BolC9t53964H' => 'bol', 'BraA02t06472Z' => 'bra', 'BraA02t06595Z' => 'bra', 'BraA06t24048Z' => 'bra', 'BraA07t31010Z' => 'bra', 'BraA09t36567Z' => 'bra', 'C02p22700' => 'bna', 'C02p25200' => 'bna', 'C02p41450' => 'bna', 'C03p59890' => 'bna', 'C05p10130' => 'bna', 'C05p31320' => 'bna', 'C06p43050' => 'bna', 'C09p10670' => 'bna', 'CAN.G1343.20' => 'can', 'CAN.G153.19' => 'can', 'CAN.G497.7' => 'can', 'CANSAT01G3006' => 'cansat', 'CANSAT11G1821' => 'cansat', 'CANSAT64G1104' => 'cansat', 'CARHR013600' => 'chi', 'CARHR059690' => 'chi', 'CARHR061610' => 'chi', 'CARHR279770' => 'chi', 'Carub.0001s1295' => 'cru', 'Carub.0002s1351' => 'cru', 'Carub.0002s1535' => 'cru', 'Carub.0008s2667' => 'cru', 'Ca_04307_v3' => 'car', 'Ca_22089_v3' => 'car', 'Ca_26149_v3' => 'car', 'Ca_26150_v3' => 'car', 'CBR_g27897' => 'cbr', 'Cc07_g05040' => 'ccan', 'Cc07_g07520' => 'ccan', 'Cc11_g10760' => 'ccan', 'CDE04G2677' => 'cde', 'CDE06G1107' => 'cde', 'CDE06G2305' => 'cde', 'CDE06G2647' => 'cde', 'CDE07G1053' => 'cde', 'CDE07G1824' => 'cde', 'CDE10G1132' => 'cde', 'CDE10G1177' => 'cde', 'Cfa007959' => 'cfa', 'Cfa009251' => 'cfa', 'Cfa018650' => 'cfa', 'Ciclev10013467m.g' => 'ccl', 'Ciclev10024751m.g' => 'ccl', 'Ciclev10030538m.g' => 'ccl', 'CiPaw.03G005400' => 'cil', 'CiPaw.04G003600' => 'cil', 'CiPaw.07G038400' => 'cil', 'CiPaw.08G149100' => 'cil', 'CiPaw.15G002200' => 'cil', 'ClCG01G005770' => 'cla', 'ClCG01G017910' => 'cla', 'ClCG11G005290' => 'cla', 'COL.COLO4_09721' => 'col', 'COL.COLO4_09722' => 'col', 'COL.COLO4_16205' => 'col', 'Cpa.g.c42160' => 'cpa', 'Cpa.g.sc1.235' => 'cpa', 'Cpa.g.sc129.57' => 'cpa', 'Cpa.g.sc179.33' => 'cpa', 'Cpa.g.sc4.201' => 'cpa', 'CsaV3_5G028920' => 'csa', 'CsaV3_5G039060' => 'csa', 'CsaV3_6G044430' => 'csa', 'CSS0006423' => 'camsi', 'CSS0008216' => 'camsi', 'CSS0008376' => 'camsi', 'CSS0016620' => 'camsi', 'CSS0018350' => 'camsi', 'CSS0019307' => 'camsi', 'CSS0028126' => 'camsi', 'CSS0029331' => 'camsi', 'CSS0046282' => 'camsi', 'DCAR_007220' => 'dca', 'DCAR_007520' => 'dca', 'DCAR_010974' => 'dca', 'DCAR_021833' => 'dca', 'DCAR_025832' => 'dca', 'DCAR_030093' => 'dca', 'Dinv05807' => 'din', 'Dinv16523' => 'din', 'Dinv23061' => 'din', 'Dinv26969' => 'din', 'Dinv26970' => 'din', 'Dinv34858' => 'din', 'Dinv34859' => 'din', 'Duzib138G0922' => 'dzi', 'Duzib147G1298' => 'dzi', 'Duzib251G0529' => 'dzi', 'Duzib264G0128' => 'dzi', 'ECA232G1830' => 'eca', 'ECA234G0497' => 'eca', 'ECA238G3630' => 'eca', 'EL10Ac2g04618' => 'bvu', 'EL10Ac6g14522' => 'bvu', 'EL10Ac6g14944' => 'bvu', 'Eucgr.A00773' => 'egr', 'Eucgr.G02361' => 'egr', 'Eucgr.I00661' => 'egr', 'Eucgr.J01462' => 'egr', 'FAN02G0241' => 'fan', 'FAN05G5792' => 'fan', 'FAN07G2260' => 'fan', 'FAN09G4253' => 'fan', 'FAN12G3823' => 'fan', 'FAN14G3399' => 'fan', 'FAN17G1780' => 'fan', 'FAN19G2689' => 'fan', 'FAN22G2204' => 'fan', 'FAN23G0417' => 'fan', 'FAN26G2388' => 'fan', 'FAN28G2309' => 'fan', 'FvH4_1g18512' => 'fve', 'FvH4_4g28241' => 'fve', 'FvH4_6g45461' => 'fve', 'Glyma.01G090002' => 'gma', 'Glyma.01G090102' => 'gma', 'Glyma.01G196400' => 'gma', 'Glyma.02G101800' => 'gma', 'Glyma.05G109300' => 'gma', 'Glyma.08G256300' => 'gma', 'Glyma.11G045200' => 'gma', 'Glyma.17G157900' => 'gma', 'Glyma.18G280500' => 'gma', 'Gohir.A02G148800' => 'ghi', 'Gohir.A05G393701' => 'ghi', 'Gohir.A07G164400' => 'ghi', 'Gohir.A07G164500' => 'ghi', 'Gohir.A11G161100' => 'ghi', 'Gohir.A11G211100' => 'ghi', 'Gohir.A12G172400' => 'ghi', 'Gohir.A13G086580' => 'ghi', 'Gohir.D03G031500' => 'ghi', 'Gohir.D03G055400' => 'ghi', 'Gohir.D07G179800' => 'ghi', 'Gohir.D11G167400' => 'ghi', 'Gohir.D11G212000' => 'ghi', 'Gohir.D12G174900' => 'ghi', 'Gorai.001G200600' => 'gra', 'Gorai.003G033100' => 'gra', 'Gorai.007G178500' => 'gra', 'Gorai.007G227800' => 'gra', 'Gorai.008G187500' => 'gra', 'GSVIVG01007428001' => 'vvi', 'GSVIVG01011972001' => 'vvi', 'GSVIVG01031076001' => 'vvi', 'HanXRQChr07g0200201' => 'han', 'HanXRQChr09g0261551' => 'han', 'HanXRQChr14g0452321' => 'han', 'HanXRQChr14g0452361' => 'han', 'HanXRQChr16g0528821' => 'han', 'HanXRQChr17g0567751' => 'han', 'Haze_03970' => 'cav', 'Haze_14110' => 'cav', 'Haze_14112' => 'cav', 'Haze_17417' => 'cav', 'Hma1.2p1_0136F.1_g062050' => 'hma', 'Hma1.2p1_0477F.1_g161000' => 'hma', 'Hma1.2p1_0477F.1_g161010' => 'hma', 'Hma1.2p1_0477F.1_g161020' => 'hma', 'Hma1.2p1_0605F.1_g187860' => 'hma', 'HPP92_017692' => 'vpl', 'HPP92_021838' => 'vpl', 'HPP92_021839' => 'vpl', 'HPP92_024702' => 'vpl', 'Hund05774' => 'sun', 'Hund13740' => 'sun', 'Hund16591' => 'sun', 'Hund25112' => 'sun', 'Lalb_Chr04g0255011' => 'lal', 'Lalb_Chr09g0335511' => 'lal', 'Lalb_Chr16g0379031' => 'lal', 'Lalb_Chr17g0336541' => 'lal', 'Lj1g0026501' => 'lja', 'Lj2g0006914' => 'lja', 'Lj4A168T50' => 'lonja', 'Lj4g0025248' => 'lja', 'Lj6C767T7' => 'lonja', 'Lj6C767T8' => 'lonja', 'Lj7A9G80' => 'lonja', 'Lsat_1_v5_gn_2_86661' => 'lsa', 'Lsat_1_v5_gn_4_159441' => 'lsa', 'Lsat_1_v5_gn_4_19300' => 'lsa', 'Manes.01G107600' => 'mes', 'Manes.06G074000' => 'mes', 'Manes.12G118800' => 'mes', 'Manes.13G107600' => 'mes', 'Mapoly0160s0011' => 'mpo', 'MBI16_g11022_MAGBIO' => 'mbi', 'MBI16_g11023_MAGBIO' => 'mbi', 'MD02G1191400' => 'mdo', 'MD09G1082900' => 'mdo', 'MD13G1048500' => 'mdo', 'MD15G1302600' => 'mdo', 'MD16G1049800' => 'mdo', 'Medtr4g097580' => 'mtr', 'Medtr5g052150' => 'mtr', 'Medtr5g052200' => 'mtr', 'Medtr6g015270' => 'mtr', 'Medtr6g015285' => 'mtr', 'Medtr7g018610' => 'mtr', 'Medtr7g116170' => 'mtr', 'MELO3C005352.2' => 'cme', 'MELO3C007665.2' => 'cme', 'MELO3C022065.2' => 'cme', 'Migut.H00316' => 'egut', 'Migut.H00533' => 'egut', 'Migut.L01107' => 'egut', 'MSTRG.23648' => 'ama', 'MSTRG.23825' => 'ama', 'MSTRG.2942' => 'ama', 'MSTRG.810' => 'ama', 'Nitab4.5_0000597g0010' => 'nta', 'Nitab4.5_0002390g0010' => 'nta', 'Nitab4.5_0003461g0040' => 'nta', 'Nitab4.5_0003478g0030' => 'nta', 'Nitab4.5_0003990g0020' => 'nta', 'Nitab4.5_0004420g0060' => 'nta', 'Nitab4.5_0004487g0020' => 'nta', 'Nitab4.5_0009272g0010' => 'nta', 'Nn3g17678' => 'nnu', 'Nn4g23682' => 'nnu', 'Nn6g34551' => 'nnu', 'Oeu007110.3' => 'oeu', 'Oeu041875.1' => 'oeu', 'Oeu061811.2' => 'oeu', 'Os01g0767000' => 'osa', 'Os02g0709900' => 'osa', 'Os02g0710102' => 'osa', 'Peaxi162Scf00004g10118' => 'pax', 'Peaxi162Scf00096g01717' => 'pax', 'Peaxi162Scf00479g00119' => 'pax', 'Peaxi162Scf01056g00241' => 'pax', 'PGR004G0636' => 'pgr', 'PGR042G1271' => 'pgr', 'PGR119G1444' => 'pgr', 'PGSC0003DMG400003363' => 'stu', 'PGSC0003DMG400021400' => 'stu', 'PGSC0003DMG402010047' => 'stu', 'Phvul.003G025500' => 'pvu', 'Phvul.003G232200' => 'pvu', 'Phvul.008G020600' => 'pvu', 'Potri.008G114800' => 'ptr', 'Potri.012G034300' => 'ptr', 'Potri.015G024900' => 'ptr', 'Potri.017G111400' => 'ptr', 'Pp3c1_1360' => 'ppa', 'Pp3c2_34830' => 'ppa', 'Prupe.1G303700' => 'ppe', 'Prupe.3G240800' => 'ppe', 'Prupe.6G214100' => 'ppe', 'Psat1g067200' => 'psa', 'Psat3g191560' => 'psa', 'Psat4g080640' => 'psa', 'PSO017G3294' => 'pso', 'PSO017G3961' => 'pso', 'PSO017G4742' => 'pso', 'PSO063G3921' => 'pso', 'PSO170G4358' => 'pso', 'PSO478G2613' => 'pso', 'PSO832G1490' => 'pso', 'QL01p000940' => 'qlo', 'QL01p000944' => 'qlo', 'QL01p000954' => 'qlo', 'QL02p053039' => 'qlo', 'QL06p038381' => 'qlo', 'RcHm_v2.0_Chr2g0109151' => 'rch', 'RcHm_v2.0_Chr2g0163401' => 'rch', 'RcHm_v2.0_Chr4g0436081' => 'rch', 'RcHm_v2.0_Chr4g0436091' => 'rch', 'RcHm_v2.0_Chr4g0436101' => 'rch', 'RcHm_v2.0_Chr7g0226101' => 'rch', 'Rhsim06G0209200' => 'rsi', 'Rhsim08G0079900' => 'rsi', 'Rhsim10G0092900' => 'rsi', 'Rhsim12G0080700' => 'rsi', 'Sabra08G0087000' => 'sbr', 'Sabra12G0023500' => 'sbr', 'SalBow1G0002' => 'sbo', 'SalBow1G5670' => 'sbo', 'SalBow1G6161' => 'sbo', 'SalBow3G2766' => 'sbo', 'SalBow8G4999' => 'sbo', 'Sc11g0002990' => 'sci', 'Sc11g0008120' => 'sci', 'Sc16g0000890' => 'sci', 'Sed0000445' => 'sed', 'Sed0011516' => 'sed', 'Sed0013236' => 'sed', 'Sed0017705' => 'sed', 'Sed0021007' => 'sed', 'Sed0026492' => 'sed', 'SEGI_02593' => 'sgi', 'SEGI_18919' => 'sgi', 'SEGI_31543' => 'sgi', 'SGA_v2.0_scaffold121G33074' => 'sas', 'SGA_v2.0_scaffold204G41653' => 'sas', 'SGA_v2.0_scaffold335G49141' => 'sas', 'SGA_v2.0_scaffold36G14511' => 'sas', 'SMO223G0040' => 'smo', 'Solyc02g089800.3' => 'sly', 'Solyc02g091960.4' => 'sly', 'Solyc03g045050.4' => 'sly', 'Sopen02g034490' => 'spe', 'Sopen02g036530' => 'spe', 'Sopen03g009490' => 'spe', 'Sp1g11740' => 'spa', 'Sp2g28870' => 'spa', 'Sp5g22170' => 'spa', 'TAR371G0717' => 'tar', 'TAR381G1251' => 'tar', 'TAR622G0233' => 'tar', 'TAR622G0904' => 'tar', 'TAR622G0959' => 'tar', 'TAR625G0235' => 'tar', 'TAR629G0360' => 'tar', 'TAR629G1671' => 'tar', 'TAR629G1866' => 'tar', 'THA.LOC104805555' => 'tha', 'THA.LOC104815216' => 'tha', 'THA.LOC104822178' => 'tha', 'THA.LOC104822710' => 'tha', 'THA.LOC104825719' => 'tha', 'THA.LOC104826508' => 'tha', 'Thecc.01G078400' => 'tca', 'Thecc.02G363000' => 'tca', 'Thecc.04G140200' => 'tca', 'Thhalv10003578m.g' => 'esa', 'Thhalv10006601m.g' => 'esa', 'Thhalv10018034m.g' => 'esa', 'Thhalv10019562m.g' => 'esa', 'TPR.G10013' => 'tpr', 'TPR.G3699' => 'tpr', 'TPR.G4495' => 'tpr', 'TWI31G0763' => 'twi', 'TWI31G1272' => 'twi', 'TWI53G1363' => 'twi', 'TWI63G0078' => 'twi', 'TWI74G0426' => 'twi', 'TWI77G0068' => 'twi', 'TWI79G1631' => 'twi', 'unitig_0.g494' => 'ugi', 'unitig_22.g6546' => 'ugi', 'unitig_8.g3263' => 'ugi', 'unitig_8.g3264' => 'ugi', 'unitig_899.g15128' => 'ugi', 'vmacro01359' => 'vma', 'vmacro05373' => 'vma', 'vmacro05374' => 'vma', 'vmacro18103' => 'vma', 'VMungo0251G3305' => 'vmu', 'VMungo1215G1277' => 'vmu', 'VMungo1383G0213' => 'vmu', 'Zm00001eb152080' => 'zma', 'Zm00001eb188670' => 'zma', 'Zm00001eb252350' => 'zma', 'Zm00001eb288610' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001377', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001377' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001377', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '454', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001377' ) ), 'genes' => array( 'A01p04840' => 'bna', 'A02p14090' => 'bna', 'A02p15350' => 'bna', 'A06p08530' => 'bna', 'A07p33840' => 'bna', 'A07p35170' => 'bna', 'A09p09150' => 'bna', 'Aa31LG1G1390' => 'aar', 'Aa31LG1G16300' => 'aar', 'Aa31LG2G3600' => 'aar', 'Aa31LG2G3610' => 'aar', 'Aa31sc79G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5167' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.551' => 'aag', 'Actinidia11953' => 'ach', 'Actinidia13686' => 'ach', 'Actinidia13687' => 'ach', 'Actinidia13688' => 'ach', 'Actinidia14837' => 'ach', 'Actinidia14838' => 'ach', 'Actinidia14839' => 'ach', 'Actinidia16605' => 'ach', 'Actinidia17619' => 'ach', 'Actinidia26291' => 'ach', 'Actinidia26292' => 'ach', 'Actinidia36410' => 'ach', 'Actinidia36411' => 'ach', 'Actinidia38404' => 'ach', 'Ah.03g138000' => 'amhyb', 'Ah.10g037470' => 'amhyb', 'Ah.16g102090' => 'amhyb', 'AL1G24910' => 'aly', 'AL2G25750' => 'aly', 'AL2G27740' => 'aly', 'AL6G50880' => 'aly', 'AL8G43490' => 'aly', 'Aqoxy3G00643' => 'aox', 'Aqoxy3G02689_Aqoxy3G02690' => 'aox', 'Aqoxy3G03368' => 'aox', 'Aqoxy5G00825' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15YI41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CMW6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FD4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90HUEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98QD99' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AYA763' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP8NJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGXB7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0PK62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA1KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYT0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLH8ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN41X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL6B48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3TKD3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SERK2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8DCP7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPT71U' => 'arhy', 'AT1G13220' => 'ath', 'AT1G67230' => 'ath', 'AT1G68790' => 'ath', 'AT5G65770' => 'ath', 'AT5G65780' => 'ath', 'ATR0598G143' => 'atr', 'ATR0807G122' => 'atr', 'Atru.chr11.1383' => 'acertr', 'Atru.chr11.1384' => 'acertr', 'Atru.chr3.1079' => 'acertr', 'Atru.chr6.468' => 'acertr', 'Atru.chr6.469' => 'acertr', 'Atru.chr8.798' => 'acertr', 'AUR62002935' => 'cqu', 'AUR62003155' => 'cqu', 'AUR62007744' => 'cqu', 'AUR62007977' => 'cqu', 'AUR62008955' => 'cqu', 'BcaB03g15212' => 'bca', 'BcaB04g20027' => 'bca', 'BcaB05g24249' => 'bca', 'BcaB05g24250' => 'bca', 'BcaB05g24411' => 'bca', 'BcaC01g02835' => 'bca', 'BcaC03g14819' => 'bca', 'BcaC03g14987' => 'bca', 'BcaC04g23249' => 'bca', 'BcaC06g31708' => 'bca', 'BcaC08g46149' => 'bca', 'BolC2t08423H' => 'bol', 'BolC2t08598H' => 'bol', 'BolC3t18254H' => 'bol', 'BolC5t29759H' => 'bol', 'BolC6t39131H' => 'bol', 'BolC9t53964H' => 'bol', 'BraA02t06472Z' => 'bra', 'BraA02t06595Z' => 'bra', 'BraA06t24048Z' => 'bra', 'BraA07t31010Z' => 'bra', 'BraA09t36567Z' => 'bra', 'C02p22700' => 'bna', 'C02p25200' => 'bna', 'C02p41450' => 'bna', 'C03p59890' => 'bna', 'C05p10130' => 'bna', 'C05p31320' => 'bna', 'C06p43050' => 'bna', 'C09p10670' => 'bna', 'CAN.G1343.20' => 'can', 'CAN.G153.19' => 'can', 'CAN.G497.7' => 'can', 'CANSAT01G3006' => 'cansat', 'CANSAT11G1821' => 'cansat', 'CANSAT64G1104' => 'cansat', 'CARHR013600' => 'chi', 'CARHR059690' => 'chi', 'CARHR061610' => 'chi', 'CARHR279770' => 'chi', 'Carub.0001s1295' => 'cru', 'Carub.0002s1351' => 'cru', 'Carub.0002s1535' => 'cru', 'Carub.0008s2667' => 'cru', 'Ca_04307_v3' => 'car', 'Ca_22089_v3' => 'car', 'Ca_26149_v3' => 'car', 'Ca_26150_v3' => 'car', 'CBR_g27897' => 'cbr', 'Cc07_g05040' => 'ccan', 'Cc07_g07520' => 'ccan', 'Cc11_g10760' => 'ccan', 'CDE04G2677' => 'cde', 'CDE06G1107' => 'cde', 'CDE06G2305' => 'cde', 'CDE06G2647' => 'cde', 'CDE07G1053' => 'cde', 'CDE07G1824' => 'cde', 'CDE10G1132' => 'cde', 'CDE10G1177' => 'cde', 'Cfa007959' => 'cfa', 'Cfa009251' => 'cfa', 'Cfa018650' => 'cfa', 'Ciclev10013467m.g' => 'ccl', 'Ciclev10024751m.g' => 'ccl', 'Ciclev10030538m.g' => 'ccl', 'CiPaw.03G005400' => 'cil', 'CiPaw.04G003600' => 'cil', 'CiPaw.07G038400' => 'cil', 'CiPaw.08G149100' => 'cil', 'CiPaw.15G002200' => 'cil', 'ClCG01G005770' => 'cla', 'ClCG01G017910' => 'cla', 'ClCG11G005290' => 'cla', 'COL.COLO4_09721' => 'col', 'COL.COLO4_09722' => 'col', 'COL.COLO4_16205' => 'col', 'Cpa.g.c42160' => 'cpa', 'Cpa.g.sc1.235' => 'cpa', 'Cpa.g.sc129.57' => 'cpa', 'Cpa.g.sc179.33' => 'cpa', 'Cpa.g.sc4.201' => 'cpa', 'CsaV3_5G028920' => 'csa', 'CsaV3_5G039060' => 'csa', 'CsaV3_6G044430' => 'csa', 'CSS0006423' => 'camsi', 'CSS0008216' => 'camsi', 'CSS0008376' => 'camsi', 'CSS0016620' => 'camsi', 'CSS0018350' => 'camsi', 'CSS0019307' => 'camsi', 'CSS0028126' => 'camsi', 'CSS0029331' => 'camsi', 'CSS0046282' => 'camsi', 'DCAR_007220' => 'dca', 'DCAR_007520' => 'dca', 'DCAR_010974' => 'dca', 'DCAR_021833' => 'dca', 'DCAR_025832' => 'dca', 'DCAR_030093' => 'dca', 'Dinv05807' => 'din', 'Dinv16523' => 'din', 'Dinv23061' => 'din', 'Dinv26969' => 'din', 'Dinv26970' => 'din', 'Dinv34858' => 'din', 'Dinv34859' => 'din', 'Duzib138G0922' => 'dzi', 'Duzib147G1298' => 'dzi', 'Duzib251G0529' => 'dzi', 'Duzib264G0128' => 'dzi', 'ECA232G1830' => 'eca', 'ECA234G0497' => 'eca', 'ECA238G3630' => 'eca', 'EL10Ac2g04618' => 'bvu', 'EL10Ac6g14522' => 'bvu', 'EL10Ac6g14944' => 'bvu', 'Eucgr.A00773' => 'egr', 'Eucgr.G02361' => 'egr', 'Eucgr.I00661' => 'egr', 'Eucgr.J01462' => 'egr', 'FAN02G0241' => 'fan', 'FAN05G5792' => 'fan', 'FAN07G2260' => 'fan', 'FAN09G4253' => 'fan', 'FAN12G3823' => 'fan', 'FAN14G3399' => 'fan', 'FAN17G1780' => 'fan', 'FAN19G2689' => 'fan', 'FAN22G2204' => 'fan', 'FAN23G0417' => 'fan', 'FAN26G2388' => 'fan', 'FAN28G2309' => 'fan', 'FvH4_1g18512' => 'fve', 'FvH4_4g28241' => 'fve', 'FvH4_6g45461' => 'fve', 'Glyma.01G090002' => 'gma', 'Glyma.01G090102' => 'gma', 'Glyma.01G196400' => 'gma', 'Glyma.02G101800' => 'gma', 'Glyma.05G109300' => 'gma', 'Glyma.08G256300' => 'gma', 'Glyma.11G045200' => 'gma', 'Glyma.17G157900' => 'gma', 'Glyma.18G280500' => 'gma', 'Gohir.A02G148800' => 'ghi', 'Gohir.A05G393701' => 'ghi', 'Gohir.A07G164400' => 'ghi', 'Gohir.A07G164500' => 'ghi', 'Gohir.A11G161100' => 'ghi', 'Gohir.A11G211100' => 'ghi', 'Gohir.A12G172400' => 'ghi', 'Gohir.A13G086580' => 'ghi', 'Gohir.D03G031500' => 'ghi', 'Gohir.D03G055400' => 'ghi', 'Gohir.D07G179800' => 'ghi', 'Gohir.D11G167400' => 'ghi', 'Gohir.D11G212000' => 'ghi', 'Gohir.D12G174900' => 'ghi', 'Gorai.001G200600' => 'gra', 'Gorai.003G033100' => 'gra', 'Gorai.007G178500' => 'gra', 'Gorai.007G227800' => 'gra', 'Gorai.008G187500' => 'gra', 'GSVIVG01007428001' => 'vvi', 'GSVIVG01011972001' => 'vvi', 'GSVIVG01031076001' => 'vvi', 'HanXRQChr07g0200201' => 'han', 'HanXRQChr09g0261551' => 'han', 'HanXRQChr14g0452321' => 'han', 'HanXRQChr14g0452361' => 'han', 'HanXRQChr16g0528821' => 'han', 'HanXRQChr17g0567751' => 'han', 'Haze_03970' => 'cav', 'Haze_14110' => 'cav', 'Haze_14112' => 'cav', 'Haze_17417' => 'cav', 'Hma1.2p1_0136F.1_g062050' => 'hma', 'Hma1.2p1_0477F.1_g161000' => 'hma', 'Hma1.2p1_0477F.1_g161010' => 'hma', 'Hma1.2p1_0477F.1_g161020' => 'hma', 'Hma1.2p1_0605F.1_g187860' => 'hma', 'HPP92_017692' => 'vpl', 'HPP92_021838' => 'vpl', 'HPP92_021839' => 'vpl', 'HPP92_024702' => 'vpl', 'Hund05774' => 'sun', 'Hund13740' => 'sun', 'Hund16591' => 'sun', 'Hund25112' => 'sun', 'Lalb_Chr04g0255011' => 'lal', 'Lalb_Chr09g0335511' => 'lal', 'Lalb_Chr16g0379031' => 'lal', 'Lalb_Chr17g0336541' => 'lal', 'Lj1g0026501' => 'lja', 'Lj2g0006914' => 'lja', 'Lj4A168T50' => 'lonja', 'Lj4g0025248' => 'lja', 'Lj6C767T7' => 'lonja', 'Lj6C767T8' => 'lonja', 'Lj7A9G80' => 'lonja', 'Lsat_1_v5_gn_2_86661' => 'lsa', 'Lsat_1_v5_gn_4_159441' => 'lsa', 'Lsat_1_v5_gn_4_19300' => 'lsa', 'Manes.01G107600' => 'mes', 'Manes.06G074000' => 'mes', 'Manes.12G118800' => 'mes', 'Manes.13G107600' => 'mes', 'Mapoly0160s0011' => 'mpo', 'MBI16_g11022_MAGBIO' => 'mbi', 'MBI16_g11023_MAGBIO' => 'mbi', 'MD02G1191400' => 'mdo', 'MD09G1082900' => 'mdo', 'MD13G1048500' => 'mdo', 'MD15G1302600' => 'mdo', 'MD16G1049800' => 'mdo', 'Medtr4g097580' => 'mtr', 'Medtr5g052150' => 'mtr', 'Medtr5g052200' => 'mtr', 'Medtr6g015270' => 'mtr', 'Medtr6g015285' => 'mtr', 'Medtr7g018610' => 'mtr', 'Medtr7g116170' => 'mtr', 'MELO3C005352.2' => 'cme', 'MELO3C007665.2' => 'cme', 'MELO3C022065.2' => 'cme', 'Migut.H00316' => 'egut', 'Migut.H00533' => 'egut', 'Migut.L01107' => 'egut', 'MSTRG.23648' => 'ama', 'MSTRG.23825' => 'ama', 'MSTRG.2942' => 'ama', 'MSTRG.810' => 'ama', 'Nitab4.5_0000597g0010' => 'nta', 'Nitab4.5_0002390g0010' => 'nta', 'Nitab4.5_0003461g0040' => 'nta', 'Nitab4.5_0003478g0030' => 'nta', 'Nitab4.5_0003990g0020' => 'nta', 'Nitab4.5_0004420g0060' => 'nta', 'Nitab4.5_0004487g0020' => 'nta', 'Nitab4.5_0009272g0010' => 'nta', 'Nn3g17678' => 'nnu', 'Nn4g23682' => 'nnu', 'Nn6g34551' => 'nnu', 'Oeu007110.3' => 'oeu', 'Oeu041875.1' => 'oeu', 'Oeu061811.2' => 'oeu', 'Os01g0767000' => 'osa', 'Os02g0709900' => 'osa', 'Os02g0710102' => 'osa', 'Peaxi162Scf00004g10118' => 'pax', 'Peaxi162Scf00096g01717' => 'pax', 'Peaxi162Scf00479g00119' => 'pax', 'Peaxi162Scf01056g00241' => 'pax', 'PGR004G0636' => 'pgr', 'PGR042G1271' => 'pgr', 'PGR119G1444' => 'pgr', 'PGSC0003DMG400003363' => 'stu', 'PGSC0003DMG400021400' => 'stu', 'PGSC0003DMG402010047' => 'stu', 'Phvul.003G025500' => 'pvu', 'Phvul.003G232200' => 'pvu', 'Phvul.008G020600' => 'pvu', 'Potri.008G114800' => 'ptr', 'Potri.012G034300' => 'ptr', 'Potri.015G024900' => 'ptr', 'Potri.017G111400' => 'ptr', 'Pp3c1_1360' => 'ppa', 'Pp3c2_34830' => 'ppa', 'Prupe.1G303700' => 'ppe', 'Prupe.3G240800' => 'ppe', 'Prupe.6G214100' => 'ppe', 'Psat1g067200' => 'psa', 'Psat3g191560' => 'psa', 'Psat4g080640' => 'psa', 'PSO017G3294' => 'pso', 'PSO017G3961' => 'pso', 'PSO017G4742' => 'pso', 'PSO063G3921' => 'pso', 'PSO170G4358' => 'pso', 'PSO478G2613' => 'pso', 'PSO832G1490' => 'pso', 'QL01p000940' => 'qlo', 'QL01p000944' => 'qlo', 'QL01p000954' => 'qlo', 'QL02p053039' => 'qlo', 'QL06p038381' => 'qlo', 'RcHm_v2.0_Chr2g0109151' => 'rch', 'RcHm_v2.0_Chr2g0163401' => 'rch', 'RcHm_v2.0_Chr4g0436081' => 'rch', 'RcHm_v2.0_Chr4g0436091' => 'rch', 'RcHm_v2.0_Chr4g0436101' => 'rch', 'RcHm_v2.0_Chr7g0226101' => 'rch', 'Rhsim06G0209200' => 'rsi', 'Rhsim08G0079900' => 'rsi', 'Rhsim10G0092900' => 'rsi', 'Rhsim12G0080700' => 'rsi', 'Sabra08G0087000' => 'sbr', 'Sabra12G0023500' => 'sbr', 'SalBow1G0002' => 'sbo', 'SalBow1G5670' => 'sbo', 'SalBow1G6161' => 'sbo', 'SalBow3G2766' => 'sbo', 'SalBow8G4999' => 'sbo', 'Sc11g0002990' => 'sci', 'Sc11g0008120' => 'sci', 'Sc16g0000890' => 'sci', 'Sed0000445' => 'sed', 'Sed0011516' => 'sed', 'Sed0013236' => 'sed', 'Sed0017705' => 'sed', 'Sed0021007' => 'sed', 'Sed0026492' => 'sed', 'SEGI_02593' => 'sgi', 'SEGI_18919' => 'sgi', 'SEGI_31543' => 'sgi', 'SGA_v2.0_scaffold121G33074' => 'sas', 'SGA_v2.0_scaffold204G41653' => 'sas', 'SGA_v2.0_scaffold335G49141' => 'sas', 'SGA_v2.0_scaffold36G14511' => 'sas', 'SMO223G0040' => 'smo', 'Solyc02g089800.3' => 'sly', 'Solyc02g091960.4' => 'sly', 'Solyc03g045050.4' => 'sly', 'Sopen02g034490' => 'spe', 'Sopen02g036530' => 'spe', 'Sopen03g009490' => 'spe', 'Sp1g11740' => 'spa', 'Sp2g28870' => 'spa', 'Sp5g22170' => 'spa', 'TAR371G0717' => 'tar', 'TAR381G1251' => 'tar', 'TAR622G0233' => 'tar', 'TAR622G0904' => 'tar', 'TAR622G0959' => 'tar', 'TAR625G0235' => 'tar', 'TAR629G0360' => 'tar', 'TAR629G1671' => 'tar', 'TAR629G1866' => 'tar', 'THA.LOC104805555' => 'tha', 'THA.LOC104815216' => 'tha', 'THA.LOC104822178' => 'tha', 'THA.LOC104822710' => 'tha', 'THA.LOC104825719' => 'tha', 'THA.LOC104826508' => 'tha', 'Thecc.01G078400' => 'tca', 'Thecc.02G363000' => 'tca', 'Thecc.04G140200' => 'tca', 'Thhalv10003578m.g' => 'esa', 'Thhalv10006601m.g' => 'esa', 'Thhalv10018034m.g' => 'esa', 'Thhalv10019562m.g' => 'esa', 'TPR.G10013' => 'tpr', 'TPR.G3699' => 'tpr', 'TPR.G4495' => 'tpr', 'TWI31G0763' => 'twi', 'TWI31G1272' => 'twi', 'TWI53G1363' => 'twi', 'TWI63G0078' => 'twi', 'TWI74G0426' => 'twi', 'TWI77G0068' => 'twi', 'TWI79G1631' => 'twi', 'unitig_0.g494' => 'ugi', 'unitig_22.g6546' => 'ugi', 'unitig_8.g3263' => 'ugi', 'unitig_8.g3264' => 'ugi', 'unitig_899.g15128' => 'ugi', 'vmacro01359' => 'vma', 'vmacro05373' => 'vma', 'vmacro05374' => 'vma', 'vmacro18103' => 'vma', 'VMungo0251G3305' => 'vmu', 'VMungo1215G1277' => 'vmu', 'VMungo1383G0213' => 'vmu', 'Zm00001eb152080' => 'zma', 'Zm00001eb188670' => 'zma', 'Zm00001eb252350' => 'zma', 'Zm00001eb288610' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001377' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001377' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001377' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001377' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001377', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '454', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p04840' => 'bna', 'A02p14090' => 'bna', 'A02p15350' => 'bna', 'A06p08530' => 'bna', 'A07p33840' => 'bna', 'A07p35170' => 'bna', 'A09p09150' => 'bna', 'Aa31LG1G1390' => 'aar', 'Aa31LG1G16300' => 'aar', 'Aa31LG2G3600' => 'aar', 'Aa31LG2G3610' => 'aar', 'Aa31sc79G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5167' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.551' => 'aag', 'Actinidia11953' => 'ach', 'Actinidia13686' => 'ach', 'Actinidia13687' => 'ach', 'Actinidia13688' => 'ach', 'Actinidia14837' => 'ach', 'Actinidia14838' => 'ach', 'Actinidia14839' => 'ach', 'Actinidia16605' => 'ach', 'Actinidia17619' => 'ach', 'Actinidia26291' => 'ach', 'Actinidia26292' => 'ach', 'Actinidia36410' => 'ach', 'Actinidia36411' => 'ach', 'Actinidia38404' => 'ach', 'Ah.03g138000' => 'amhyb', 'Ah.10g037470' => 'amhyb', 'Ah.16g102090' => 'amhyb', 'AL1G24910' => 'aly', 'AL2G25750' => 'aly', 'AL2G27740' => 'aly', 'AL6G50880' => 'aly', 'AL8G43490' => 'aly', 'Aqoxy3G00643' => 'aox', 'Aqoxy3G02689_Aqoxy3G02690' => 'aox', 'Aqoxy3G03368' => 'aox', 'Aqoxy5G00825' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15YI41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CMW6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FD4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90HUEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98QD99' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AYA763' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP8NJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGXB7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0PK62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA1KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYT0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLH8ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN41X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL6B48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3TKD3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SERK2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8DCP7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPT71U' => 'arhy', 'AT1G13220' => 'ath', 'AT1G67230' => 'ath', 'AT1G68790' => 'ath', 'AT5G65770' => 'ath', 'AT5G65780' => 'ath', 'ATR0598G143' => 'atr', 'ATR0807G122' => 'atr', 'Atru.chr11.1383' => 'acertr', 'Atru.chr11.1384' => 'acertr', 'Atru.chr3.1079' => 'acertr', 'Atru.chr6.468' => 'acertr', 'Atru.chr6.469' => 'acertr', 'Atru.chr8.798' => 'acertr', 'AUR62002935' => 'cqu', 'AUR62003155' => 'cqu', 'AUR62007744' => 'cqu', 'AUR62007977' => 'cqu', 'AUR62008955' => 'cqu', 'BcaB03g15212' => 'bca', 'BcaB04g20027' => 'bca', 'BcaB05g24249' => 'bca', 'BcaB05g24250' => 'bca', 'BcaB05g24411' => 'bca', 'BcaC01g02835' => 'bca', 'BcaC03g14819' => 'bca', 'BcaC03g14987' => 'bca', 'BcaC04g23249' => 'bca', 'BcaC06g31708' => 'bca', 'BcaC08g46149' => 'bca', 'BolC2t08423H' => 'bol', 'BolC2t08598H' => 'bol', 'BolC3t18254H' => 'bol', 'BolC5t29759H' => 'bol', 'BolC6t39131H' => 'bol', 'BolC9t53964H' => 'bol', 'BraA02t06472Z' => 'bra', 'BraA02t06595Z' => 'bra', 'BraA06t24048Z' => 'bra', 'BraA07t31010Z' => 'bra', 'BraA09t36567Z' => 'bra', 'C02p22700' => 'bna', 'C02p25200' => 'bna', 'C02p41450' => 'bna', 'C03p59890' => 'bna', 'C05p10130' => 'bna', 'C05p31320' => 'bna', 'C06p43050' => 'bna', 'C09p10670' => 'bna', 'CAN.G1343.20' => 'can', 'CAN.G153.19' => 'can', 'CAN.G497.7' => 'can', 'CANSAT01G3006' => 'cansat', 'CANSAT11G1821' => 'cansat', 'CANSAT64G1104' => 'cansat', 'CARHR013600' => 'chi', 'CARHR059690' => 'chi', 'CARHR061610' => 'chi', 'CARHR279770' => 'chi', 'Carub.0001s1295' => 'cru', 'Carub.0002s1351' => 'cru', 'Carub.0002s1535' => 'cru', 'Carub.0008s2667' => 'cru', 'Ca_04307_v3' => 'car', 'Ca_22089_v3' => 'car', 'Ca_26149_v3' => 'car', 'Ca_26150_v3' => 'car', 'CBR_g27897' => 'cbr', 'Cc07_g05040' => 'ccan', 'Cc07_g07520' => 'ccan', 'Cc11_g10760' => 'ccan', 'CDE04G2677' => 'cde', 'CDE06G1107' => 'cde', 'CDE06G2305' => 'cde', 'CDE06G2647' => 'cde', 'CDE07G1053' => 'cde', 'CDE07G1824' => 'cde', 'CDE10G1132' => 'cde', 'CDE10G1177' => 'cde', 'Cfa007959' => 'cfa', 'Cfa009251' => 'cfa', 'Cfa018650' => 'cfa', 'Ciclev10013467m.g' => 'ccl', 'Ciclev10024751m.g' => 'ccl', 'Ciclev10030538m.g' => 'ccl', 'CiPaw.03G005400' => 'cil', 'CiPaw.04G003600' => 'cil', 'CiPaw.07G038400' => 'cil', 'CiPaw.08G149100' => 'cil', 'CiPaw.15G002200' => 'cil', 'ClCG01G005770' => 'cla', 'ClCG01G017910' => 'cla', 'ClCG11G005290' => 'cla', 'COL.COLO4_09721' => 'col', 'COL.COLO4_09722' => 'col', 'COL.COLO4_16205' => 'col', 'Cpa.g.c42160' => 'cpa', 'Cpa.g.sc1.235' => 'cpa', 'Cpa.g.sc129.57' => 'cpa', 'Cpa.g.sc179.33' => 'cpa', 'Cpa.g.sc4.201' => 'cpa', 'CsaV3_5G028920' => 'csa', 'CsaV3_5G039060' => 'csa', 'CsaV3_6G044430' => 'csa', 'CSS0006423' => 'camsi', 'CSS0008216' => 'camsi', 'CSS0008376' => 'camsi', 'CSS0016620' => 'camsi', 'CSS0018350' => 'camsi', 'CSS0019307' => 'camsi', 'CSS0028126' => 'camsi', 'CSS0029331' => 'camsi', 'CSS0046282' => 'camsi', 'DCAR_007220' => 'dca', 'DCAR_007520' => 'dca', 'DCAR_010974' => 'dca', 'DCAR_021833' => 'dca', 'DCAR_025832' => 'dca', 'DCAR_030093' => 'dca', 'Dinv05807' => 'din', 'Dinv16523' => 'din', 'Dinv23061' => 'din', 'Dinv26969' => 'din', 'Dinv26970' => 'din', 'Dinv34858' => 'din', 'Dinv34859' => 'din', 'Duzib138G0922' => 'dzi', 'Duzib147G1298' => 'dzi', 'Duzib251G0529' => 'dzi', 'Duzib264G0128' => 'dzi', 'ECA232G1830' => 'eca', 'ECA234G0497' => 'eca', 'ECA238G3630' => 'eca', 'EL10Ac2g04618' => 'bvu', 'EL10Ac6g14522' => 'bvu', 'EL10Ac6g14944' => 'bvu', 'Eucgr.A00773' => 'egr', 'Eucgr.G02361' => 'egr', 'Eucgr.I00661' => 'egr', 'Eucgr.J01462' => 'egr', 'FAN02G0241' => 'fan', 'FAN05G5792' => 'fan', 'FAN07G2260' => 'fan', 'FAN09G4253' => 'fan', 'FAN12G3823' => 'fan', 'FAN14G3399' => 'fan', 'FAN17G1780' => 'fan', 'FAN19G2689' => 'fan', 'FAN22G2204' => 'fan', 'FAN23G0417' => 'fan', 'FAN26G2388' => 'fan', 'FAN28G2309' => 'fan', 'FvH4_1g18512' => 'fve', 'FvH4_4g28241' => 'fve', 'FvH4_6g45461' => 'fve', 'Glyma.01G090002' => 'gma', 'Glyma.01G090102' => 'gma', 'Glyma.01G196400' => 'gma', 'Glyma.02G101800' => 'gma', 'Glyma.05G109300' => 'gma', 'Glyma.08G256300' => 'gma', 'Glyma.11G045200' => 'gma', 'Glyma.17G157900' => 'gma', 'Glyma.18G280500' => 'gma', 'Gohir.A02G148800' => 'ghi', 'Gohir.A05G393701' => 'ghi', 'Gohir.A07G164400' => 'ghi', 'Gohir.A07G164500' => 'ghi', 'Gohir.A11G161100' => 'ghi', 'Gohir.A11G211100' => 'ghi', 'Gohir.A12G172400' => 'ghi', 'Gohir.A13G086580' => 'ghi', 'Gohir.D03G031500' => 'ghi', 'Gohir.D03G055400' => 'ghi', 'Gohir.D07G179800' => 'ghi', 'Gohir.D11G167400' => 'ghi', 'Gohir.D11G212000' => 'ghi', 'Gohir.D12G174900' => 'ghi', 'Gorai.001G200600' => 'gra', 'Gorai.003G033100' => 'gra', 'Gorai.007G178500' => 'gra', 'Gorai.007G227800' => 'gra', 'Gorai.008G187500' => 'gra', 'GSVIVG01007428001' => 'vvi', 'GSVIVG01011972001' => 'vvi', 'GSVIVG01031076001' => 'vvi', 'HanXRQChr07g0200201' => 'han', 'HanXRQChr09g0261551' => 'han', 'HanXRQChr14g0452321' => 'han', 'HanXRQChr14g0452361' => 'han', 'HanXRQChr16g0528821' => 'han', 'HanXRQChr17g0567751' => 'han', 'Haze_03970' => 'cav', 'Haze_14110' => 'cav', 'Haze_14112' => 'cav', 'Haze_17417' => 'cav', 'Hma1.2p1_0136F.1_g062050' => 'hma', 'Hma1.2p1_0477F.1_g161000' => 'hma', 'Hma1.2p1_0477F.1_g161010' => 'hma', 'Hma1.2p1_0477F.1_g161020' => 'hma', 'Hma1.2p1_0605F.1_g187860' => 'hma', 'HPP92_017692' => 'vpl', 'HPP92_021838' => 'vpl', 'HPP92_021839' => 'vpl', 'HPP92_024702' => 'vpl', 'Hund05774' => 'sun', 'Hund13740' => 'sun', 'Hund16591' => 'sun', 'Hund25112' => 'sun', 'Lalb_Chr04g0255011' => 'lal', 'Lalb_Chr09g0335511' => 'lal', 'Lalb_Chr16g0379031' => 'lal', 'Lalb_Chr17g0336541' => 'lal', 'Lj1g0026501' => 'lja', 'Lj2g0006914' => 'lja', 'Lj4A168T50' => 'lonja', 'Lj4g0025248' => 'lja', 'Lj6C767T7' => 'lonja', 'Lj6C767T8' => 'lonja', 'Lj7A9G80' => 'lonja', 'Lsat_1_v5_gn_2_86661' => 'lsa', 'Lsat_1_v5_gn_4_159441' => 'lsa', 'Lsat_1_v5_gn_4_19300' => 'lsa', 'Manes.01G107600' => 'mes', 'Manes.06G074000' => 'mes', 'Manes.12G118800' => 'mes', 'Manes.13G107600' => 'mes', 'Mapoly0160s0011' => 'mpo', 'MBI16_g11022_MAGBIO' => 'mbi', 'MBI16_g11023_MAGBIO' => 'mbi', 'MD02G1191400' => 'mdo', 'MD09G1082900' => 'mdo', 'MD13G1048500' => 'mdo', 'MD15G1302600' => 'mdo', 'MD16G1049800' => 'mdo', 'Medtr4g097580' => 'mtr', 'Medtr5g052150' => 'mtr', 'Medtr5g052200' => 'mtr', 'Medtr6g015270' => 'mtr', 'Medtr6g015285' => 'mtr', 'Medtr7g018610' => 'mtr', 'Medtr7g116170' => 'mtr', 'MELO3C005352.2' => 'cme', 'MELO3C007665.2' => 'cme', 'MELO3C022065.2' => 'cme', 'Migut.H00316' => 'egut', 'Migut.H00533' => 'egut', 'Migut.L01107' => 'egut', 'MSTRG.23648' => 'ama', 'MSTRG.23825' => 'ama', 'MSTRG.2942' => 'ama', 'MSTRG.810' => 'ama', 'Nitab4.5_0000597g0010' => 'nta', 'Nitab4.5_0002390g0010' => 'nta', 'Nitab4.5_0003461g0040' => 'nta', 'Nitab4.5_0003478g0030' => 'nta', 'Nitab4.5_0003990g0020' => 'nta', 'Nitab4.5_0004420g0060' => 'nta', 'Nitab4.5_0004487g0020' => 'nta', 'Nitab4.5_0009272g0010' => 'nta', 'Nn3g17678' => 'nnu', 'Nn4g23682' => 'nnu', 'Nn6g34551' => 'nnu', 'Oeu007110.3' => 'oeu', 'Oeu041875.1' => 'oeu', 'Oeu061811.2' => 'oeu', 'Os01g0767000' => 'osa', 'Os02g0709900' => 'osa', 'Os02g0710102' => 'osa', 'Peaxi162Scf00004g10118' => 'pax', 'Peaxi162Scf00096g01717' => 'pax', 'Peaxi162Scf00479g00119' => 'pax', 'Peaxi162Scf01056g00241' => 'pax', 'PGR004G0636' => 'pgr', 'PGR042G1271' => 'pgr', 'PGR119G1444' => 'pgr', 'PGSC0003DMG400003363' => 'stu', 'PGSC0003DMG400021400' => 'stu', 'PGSC0003DMG402010047' => 'stu', 'Phvul.003G025500' => 'pvu', 'Phvul.003G232200' => 'pvu', 'Phvul.008G020600' => 'pvu', 'Potri.008G114800' => 'ptr', 'Potri.012G034300' => 'ptr', 'Potri.015G024900' => 'ptr', 'Potri.017G111400' => 'ptr', 'Pp3c1_1360' => 'ppa', 'Pp3c2_34830' => 'ppa', 'Prupe.1G303700' => 'ppe', 'Prupe.3G240800' => 'ppe', 'Prupe.6G214100' => 'ppe', 'Psat1g067200' => 'psa', 'Psat3g191560' => 'psa', 'Psat4g080640' => 'psa', 'PSO017G3294' => 'pso', 'PSO017G3961' => 'pso', 'PSO017G4742' => 'pso', 'PSO063G3921' => 'pso', 'PSO170G4358' => 'pso', 'PSO478G2613' => 'pso', 'PSO832G1490' => 'pso', 'QL01p000940' => 'qlo', 'QL01p000944' => 'qlo', 'QL01p000954' => 'qlo', 'QL02p053039' => 'qlo', 'QL06p038381' => 'qlo', 'RcHm_v2.0_Chr2g0109151' => 'rch', 'RcHm_v2.0_Chr2g0163401' => 'rch', 'RcHm_v2.0_Chr4g0436081' => 'rch', 'RcHm_v2.0_Chr4g0436091' => 'rch', 'RcHm_v2.0_Chr4g0436101' => 'rch', 'RcHm_v2.0_Chr7g0226101' => 'rch', 'Rhsim06G0209200' => 'rsi', 'Rhsim08G0079900' => 'rsi', 'Rhsim10G0092900' => 'rsi', 'Rhsim12G0080700' => 'rsi', 'Sabra08G0087000' => 'sbr', 'Sabra12G0023500' => 'sbr', 'SalBow1G0002' => 'sbo', 'SalBow1G5670' => 'sbo', 'SalBow1G6161' => 'sbo', 'SalBow3G2766' => 'sbo', 'SalBow8G4999' => 'sbo', 'Sc11g0002990' => 'sci', 'Sc11g0008120' => 'sci', 'Sc16g0000890' => 'sci', 'Sed0000445' => 'sed', 'Sed0011516' => 'sed', 'Sed0013236' => 'sed', 'Sed0017705' => 'sed', 'Sed0021007' => 'sed', 'Sed0026492' => 'sed', 'SEGI_02593' => 'sgi', 'SEGI_18919' => 'sgi', 'SEGI_31543' => 'sgi', 'SGA_v2.0_scaffold121G33074' => 'sas', 'SGA_v2.0_scaffold204G41653' => 'sas', 'SGA_v2.0_scaffold335G49141' => 'sas', 'SGA_v2.0_scaffold36G14511' => 'sas', 'SMO223G0040' => 'smo', 'Solyc02g089800.3' => 'sly', 'Solyc02g091960.4' => 'sly', 'Solyc03g045050.4' => 'sly', 'Sopen02g034490' => 'spe', 'Sopen02g036530' => 'spe', 'Sopen03g009490' => 'spe', 'Sp1g11740' => 'spa', 'Sp2g28870' => 'spa', 'Sp5g22170' => 'spa', 'TAR371G0717' => 'tar', 'TAR381G1251' => 'tar', 'TAR622G0233' => 'tar', 'TAR622G0904' => 'tar', 'TAR622G0959' => 'tar', 'TAR625G0235' => 'tar', 'TAR629G0360' => 'tar', 'TAR629G1671' => 'tar', 'TAR629G1866' => 'tar', 'THA.LOC104805555' => 'tha', 'THA.LOC104815216' => 'tha', 'THA.LOC104822178' => 'tha', 'THA.LOC104822710' => 'tha', 'THA.LOC104825719' => 'tha', 'THA.LOC104826508' => 'tha', 'Thecc.01G078400' => 'tca', 'Thecc.02G363000' => 'tca', 'Thecc.04G140200' => 'tca', 'Thhalv10003578m.g' => 'esa', 'Thhalv10006601m.g' => 'esa', 'Thhalv10018034m.g' => 'esa', 'Thhalv10019562m.g' => 'esa', 'TPR.G10013' => 'tpr', 'TPR.G3699' => 'tpr', 'TPR.G4495' => 'tpr', 'TWI31G0763' => 'twi', 'TWI31G1272' => 'twi', 'TWI53G1363' => 'twi', 'TWI63G0078' => 'twi', 'TWI74G0426' => 'twi', 'TWI77G0068' => 'twi', 'TWI79G1631' => 'twi', 'unitig_0.g494' => 'ugi', 'unitig_22.g6546' => 'ugi', 'unitig_8.g3263' => 'ugi', 'unitig_8.g3264' => 'ugi', 'unitig_899.g15128' => 'ugi', 'vmacro01359' => 'vma', 'vmacro05373' => 'vma', 'vmacro05374' => 'vma', 'vmacro18103' => 'vma', 'VMungo0251G3305' => 'vmu', 'VMungo1215G1277' => 'vmu', 'VMungo1383G0213' => 'vmu', 'Zm00001eb152080' => 'zma', 'Zm00001eb188670' => 'zma', 'Zm00001eb252350' => 'zma', 'Zm00001eb288610' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001377', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001377' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001377', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '454', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001377' ) ), 'genes' => array( 'A01p04840' => 'bna', 'A02p14090' => 'bna', 'A02p15350' => 'bna', 'A06p08530' => 'bna', 'A07p33840' => 'bna', 'A07p35170' => 'bna', 'A09p09150' => 'bna', 'Aa31LG1G1390' => 'aar', 'Aa31LG1G16300' => 'aar', 'Aa31LG2G3600' => 'aar', 'Aa31LG2G3610' => 'aar', 'Aa31sc79G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5167' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.551' => 'aag', 'Actinidia11953' => 'ach', 'Actinidia13686' => 'ach', 'Actinidia13687' => 'ach', 'Actinidia13688' => 'ach', 'Actinidia14837' => 'ach', 'Actinidia14838' => 'ach', 'Actinidia14839' => 'ach', 'Actinidia16605' => 'ach', 'Actinidia17619' => 'ach', 'Actinidia26291' => 'ach', 'Actinidia26292' => 'ach', 'Actinidia36410' => 'ach', 'Actinidia36411' => 'ach', 'Actinidia38404' => 'ach', 'Ah.03g138000' => 'amhyb', 'Ah.10g037470' => 'amhyb', 'Ah.16g102090' => 'amhyb', 'AL1G24910' => 'aly', 'AL2G25750' => 'aly', 'AL2G27740' => 'aly', 'AL6G50880' => 'aly', 'AL8G43490' => 'aly', 'Aqoxy3G00643' => 'aox', 'Aqoxy3G02689_Aqoxy3G02690' => 'aox', 'Aqoxy3G03368' => 'aox', 'Aqoxy5G00825' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15YI41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CMW6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FD4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90HUEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98QD99' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AYA763' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP8NJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGXB7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0PK62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA1KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYT0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLH8ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN41X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL6B48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3TKD3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SERK2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8DCP7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPT71U' => 'arhy', 'AT1G13220' => 'ath', 'AT1G67230' => 'ath', 'AT1G68790' => 'ath', 'AT5G65770' => 'ath', 'AT5G65780' => 'ath', 'ATR0598G143' => 'atr', 'ATR0807G122' => 'atr', 'Atru.chr11.1383' => 'acertr', 'Atru.chr11.1384' => 'acertr', 'Atru.chr3.1079' => 'acertr', 'Atru.chr6.468' => 'acertr', 'Atru.chr6.469' => 'acertr', 'Atru.chr8.798' => 'acertr', 'AUR62002935' => 'cqu', 'AUR62003155' => 'cqu', 'AUR62007744' => 'cqu', 'AUR62007977' => 'cqu', 'AUR62008955' => 'cqu', 'BcaB03g15212' => 'bca', 'BcaB04g20027' => 'bca', 'BcaB05g24249' => 'bca', 'BcaB05g24250' => 'bca', 'BcaB05g24411' => 'bca', 'BcaC01g02835' => 'bca', 'BcaC03g14819' => 'bca', 'BcaC03g14987' => 'bca', 'BcaC04g23249' => 'bca', 'BcaC06g31708' => 'bca', 'BcaC08g46149' => 'bca', 'BolC2t08423H' => 'bol', 'BolC2t08598H' => 'bol', 'BolC3t18254H' => 'bol', 'BolC5t29759H' => 'bol', 'BolC6t39131H' => 'bol', 'BolC9t53964H' => 'bol', 'BraA02t06472Z' => 'bra', 'BraA02t06595Z' => 'bra', 'BraA06t24048Z' => 'bra', 'BraA07t31010Z' => 'bra', 'BraA09t36567Z' => 'bra', 'C02p22700' => 'bna', 'C02p25200' => 'bna', 'C02p41450' => 'bna', 'C03p59890' => 'bna', 'C05p10130' => 'bna', 'C05p31320' => 'bna', 'C06p43050' => 'bna', 'C09p10670' => 'bna', 'CAN.G1343.20' => 'can', 'CAN.G153.19' => 'can', 'CAN.G497.7' => 'can', 'CANSAT01G3006' => 'cansat', 'CANSAT11G1821' => 'cansat', 'CANSAT64G1104' => 'cansat', 'CARHR013600' => 'chi', 'CARHR059690' => 'chi', 'CARHR061610' => 'chi', 'CARHR279770' => 'chi', 'Carub.0001s1295' => 'cru', 'Carub.0002s1351' => 'cru', 'Carub.0002s1535' => 'cru', 'Carub.0008s2667' => 'cru', 'Ca_04307_v3' => 'car', 'Ca_22089_v3' => 'car', 'Ca_26149_v3' => 'car', 'Ca_26150_v3' => 'car', 'CBR_g27897' => 'cbr', 'Cc07_g05040' => 'ccan', 'Cc07_g07520' => 'ccan', 'Cc11_g10760' => 'ccan', 'CDE04G2677' => 'cde', 'CDE06G1107' => 'cde', 'CDE06G2305' => 'cde', 'CDE06G2647' => 'cde', 'CDE07G1053' => 'cde', 'CDE07G1824' => 'cde', 'CDE10G1132' => 'cde', 'CDE10G1177' => 'cde', 'Cfa007959' => 'cfa', 'Cfa009251' => 'cfa', 'Cfa018650' => 'cfa', 'Ciclev10013467m.g' => 'ccl', 'Ciclev10024751m.g' => 'ccl', 'Ciclev10030538m.g' => 'ccl', 'CiPaw.03G005400' => 'cil', 'CiPaw.04G003600' => 'cil', 'CiPaw.07G038400' => 'cil', 'CiPaw.08G149100' => 'cil', 'CiPaw.15G002200' => 'cil', 'ClCG01G005770' => 'cla', 'ClCG01G017910' => 'cla', 'ClCG11G005290' => 'cla', 'COL.COLO4_09721' => 'col', 'COL.COLO4_09722' => 'col', 'COL.COLO4_16205' => 'col', 'Cpa.g.c42160' => 'cpa', 'Cpa.g.sc1.235' => 'cpa', 'Cpa.g.sc129.57' => 'cpa', 'Cpa.g.sc179.33' => 'cpa', 'Cpa.g.sc4.201' => 'cpa', 'CsaV3_5G028920' => 'csa', 'CsaV3_5G039060' => 'csa', 'CsaV3_6G044430' => 'csa', 'CSS0006423' => 'camsi', 'CSS0008216' => 'camsi', 'CSS0008376' => 'camsi', 'CSS0016620' => 'camsi', 'CSS0018350' => 'camsi', 'CSS0019307' => 'camsi', 'CSS0028126' => 'camsi', 'CSS0029331' => 'camsi', 'CSS0046282' => 'camsi', 'DCAR_007220' => 'dca', 'DCAR_007520' => 'dca', 'DCAR_010974' => 'dca', 'DCAR_021833' => 'dca', 'DCAR_025832' => 'dca', 'DCAR_030093' => 'dca', 'Dinv05807' => 'din', 'Dinv16523' => 'din', 'Dinv23061' => 'din', 'Dinv26969' => 'din', 'Dinv26970' => 'din', 'Dinv34858' => 'din', 'Dinv34859' => 'din', 'Duzib138G0922' => 'dzi', 'Duzib147G1298' => 'dzi', 'Duzib251G0529' => 'dzi', 'Duzib264G0128' => 'dzi', 'ECA232G1830' => 'eca', 'ECA234G0497' => 'eca', 'ECA238G3630' => 'eca', 'EL10Ac2g04618' => 'bvu', 'EL10Ac6g14522' => 'bvu', 'EL10Ac6g14944' => 'bvu', 'Eucgr.A00773' => 'egr', 'Eucgr.G02361' => 'egr', 'Eucgr.I00661' => 'egr', 'Eucgr.J01462' => 'egr', 'FAN02G0241' => 'fan', 'FAN05G5792' => 'fan', 'FAN07G2260' => 'fan', 'FAN09G4253' => 'fan', 'FAN12G3823' => 'fan', 'FAN14G3399' => 'fan', 'FAN17G1780' => 'fan', 'FAN19G2689' => 'fan', 'FAN22G2204' => 'fan', 'FAN23G0417' => 'fan', 'FAN26G2388' => 'fan', 'FAN28G2309' => 'fan', 'FvH4_1g18512' => 'fve', 'FvH4_4g28241' => 'fve', 'FvH4_6g45461' => 'fve', 'Glyma.01G090002' => 'gma', 'Glyma.01G090102' => 'gma', 'Glyma.01G196400' => 'gma', 'Glyma.02G101800' => 'gma', 'Glyma.05G109300' => 'gma', 'Glyma.08G256300' => 'gma', 'Glyma.11G045200' => 'gma', 'Glyma.17G157900' => 'gma', 'Glyma.18G280500' => 'gma', 'Gohir.A02G148800' => 'ghi', 'Gohir.A05G393701' => 'ghi', 'Gohir.A07G164400' => 'ghi', 'Gohir.A07G164500' => 'ghi', 'Gohir.A11G161100' => 'ghi', 'Gohir.A11G211100' => 'ghi', 'Gohir.A12G172400' => 'ghi', 'Gohir.A13G086580' => 'ghi', 'Gohir.D03G031500' => 'ghi', 'Gohir.D03G055400' => 'ghi', 'Gohir.D07G179800' => 'ghi', 'Gohir.D11G167400' => 'ghi', 'Gohir.D11G212000' => 'ghi', 'Gohir.D12G174900' => 'ghi', 'Gorai.001G200600' => 'gra', 'Gorai.003G033100' => 'gra', 'Gorai.007G178500' => 'gra', 'Gorai.007G227800' => 'gra', 'Gorai.008G187500' => 'gra', 'GSVIVG01007428001' => 'vvi', 'GSVIVG01011972001' => 'vvi', 'GSVIVG01031076001' => 'vvi', 'HanXRQChr07g0200201' => 'han', 'HanXRQChr09g0261551' => 'han', 'HanXRQChr14g0452321' => 'han', 'HanXRQChr14g0452361' => 'han', 'HanXRQChr16g0528821' => 'han', 'HanXRQChr17g0567751' => 'han', 'Haze_03970' => 'cav', 'Haze_14110' => 'cav', 'Haze_14112' => 'cav', 'Haze_17417' => 'cav', 'Hma1.2p1_0136F.1_g062050' => 'hma', 'Hma1.2p1_0477F.1_g161000' => 'hma', 'Hma1.2p1_0477F.1_g161010' => 'hma', 'Hma1.2p1_0477F.1_g161020' => 'hma', 'Hma1.2p1_0605F.1_g187860' => 'hma', 'HPP92_017692' => 'vpl', 'HPP92_021838' => 'vpl', 'HPP92_021839' => 'vpl', 'HPP92_024702' => 'vpl', 'Hund05774' => 'sun', 'Hund13740' => 'sun', 'Hund16591' => 'sun', 'Hund25112' => 'sun', 'Lalb_Chr04g0255011' => 'lal', 'Lalb_Chr09g0335511' => 'lal', 'Lalb_Chr16g0379031' => 'lal', 'Lalb_Chr17g0336541' => 'lal', 'Lj1g0026501' => 'lja', 'Lj2g0006914' => 'lja', 'Lj4A168T50' => 'lonja', 'Lj4g0025248' => 'lja', 'Lj6C767T7' => 'lonja', 'Lj6C767T8' => 'lonja', 'Lj7A9G80' => 'lonja', 'Lsat_1_v5_gn_2_86661' => 'lsa', 'Lsat_1_v5_gn_4_159441' => 'lsa', 'Lsat_1_v5_gn_4_19300' => 'lsa', 'Manes.01G107600' => 'mes', 'Manes.06G074000' => 'mes', 'Manes.12G118800' => 'mes', 'Manes.13G107600' => 'mes', 'Mapoly0160s0011' => 'mpo', 'MBI16_g11022_MAGBIO' => 'mbi', 'MBI16_g11023_MAGBIO' => 'mbi', 'MD02G1191400' => 'mdo', 'MD09G1082900' => 'mdo', 'MD13G1048500' => 'mdo', 'MD15G1302600' => 'mdo', 'MD16G1049800' => 'mdo', 'Medtr4g097580' => 'mtr', 'Medtr5g052150' => 'mtr', 'Medtr5g052200' => 'mtr', 'Medtr6g015270' => 'mtr', 'Medtr6g015285' => 'mtr', 'Medtr7g018610' => 'mtr', 'Medtr7g116170' => 'mtr', 'MELO3C005352.2' => 'cme', 'MELO3C007665.2' => 'cme', 'MELO3C022065.2' => 'cme', 'Migut.H00316' => 'egut', 'Migut.H00533' => 'egut', 'Migut.L01107' => 'egut', 'MSTRG.23648' => 'ama', 'MSTRG.23825' => 'ama', 'MSTRG.2942' => 'ama', 'MSTRG.810' => 'ama', 'Nitab4.5_0000597g0010' => 'nta', 'Nitab4.5_0002390g0010' => 'nta', 'Nitab4.5_0003461g0040' => 'nta', 'Nitab4.5_0003478g0030' => 'nta', 'Nitab4.5_0003990g0020' => 'nta', 'Nitab4.5_0004420g0060' => 'nta', 'Nitab4.5_0004487g0020' => 'nta', 'Nitab4.5_0009272g0010' => 'nta', 'Nn3g17678' => 'nnu', 'Nn4g23682' => 'nnu', 'Nn6g34551' => 'nnu', 'Oeu007110.3' => 'oeu', 'Oeu041875.1' => 'oeu', 'Oeu061811.2' => 'oeu', 'Os01g0767000' => 'osa', 'Os02g0709900' => 'osa', 'Os02g0710102' => 'osa', 'Peaxi162Scf00004g10118' => 'pax', 'Peaxi162Scf00096g01717' => 'pax', 'Peaxi162Scf00479g00119' => 'pax', 'Peaxi162Scf01056g00241' => 'pax', 'PGR004G0636' => 'pgr', 'PGR042G1271' => 'pgr', 'PGR119G1444' => 'pgr', 'PGSC0003DMG400003363' => 'stu', 'PGSC0003DMG400021400' => 'stu', 'PGSC0003DMG402010047' => 'stu', 'Phvul.003G025500' => 'pvu', 'Phvul.003G232200' => 'pvu', 'Phvul.008G020600' => 'pvu', 'Potri.008G114800' => 'ptr', 'Potri.012G034300' => 'ptr', 'Potri.015G024900' => 'ptr', 'Potri.017G111400' => 'ptr', 'Pp3c1_1360' => 'ppa', 'Pp3c2_34830' => 'ppa', 'Prupe.1G303700' => 'ppe', 'Prupe.3G240800' => 'ppe', 'Prupe.6G214100' => 'ppe', 'Psat1g067200' => 'psa', 'Psat3g191560' => 'psa', 'Psat4g080640' => 'psa', 'PSO017G3294' => 'pso', 'PSO017G3961' => 'pso', 'PSO017G4742' => 'pso', 'PSO063G3921' => 'pso', 'PSO170G4358' => 'pso', 'PSO478G2613' => 'pso', 'PSO832G1490' => 'pso', 'QL01p000940' => 'qlo', 'QL01p000944' => 'qlo', 'QL01p000954' => 'qlo', 'QL02p053039' => 'qlo', 'QL06p038381' => 'qlo', 'RcHm_v2.0_Chr2g0109151' => 'rch', 'RcHm_v2.0_Chr2g0163401' => 'rch', 'RcHm_v2.0_Chr4g0436081' => 'rch', 'RcHm_v2.0_Chr4g0436091' => 'rch', 'RcHm_v2.0_Chr4g0436101' => 'rch', 'RcHm_v2.0_Chr7g0226101' => 'rch', 'Rhsim06G0209200' => 'rsi', 'Rhsim08G0079900' => 'rsi', 'Rhsim10G0092900' => 'rsi', 'Rhsim12G0080700' => 'rsi', 'Sabra08G0087000' => 'sbr', 'Sabra12G0023500' => 'sbr', 'SalBow1G0002' => 'sbo', 'SalBow1G5670' => 'sbo', 'SalBow1G6161' => 'sbo', 'SalBow3G2766' => 'sbo', 'SalBow8G4999' => 'sbo', 'Sc11g0002990' => 'sci', 'Sc11g0008120' => 'sci', 'Sc16g0000890' => 'sci', 'Sed0000445' => 'sed', 'Sed0011516' => 'sed', 'Sed0013236' => 'sed', 'Sed0017705' => 'sed', 'Sed0021007' => 'sed', 'Sed0026492' => 'sed', 'SEGI_02593' => 'sgi', 'SEGI_18919' => 'sgi', 'SEGI_31543' => 'sgi', 'SGA_v2.0_scaffold121G33074' => 'sas', 'SGA_v2.0_scaffold204G41653' => 'sas', 'SGA_v2.0_scaffold335G49141' => 'sas', 'SGA_v2.0_scaffold36G14511' => 'sas', 'SMO223G0040' => 'smo', 'Solyc02g089800.3' => 'sly', 'Solyc02g091960.4' => 'sly', 'Solyc03g045050.4' => 'sly', 'Sopen02g034490' => 'spe', 'Sopen02g036530' => 'spe', 'Sopen03g009490' => 'spe', 'Sp1g11740' => 'spa', 'Sp2g28870' => 'spa', 'Sp5g22170' => 'spa', 'TAR371G0717' => 'tar', 'TAR381G1251' => 'tar', 'TAR622G0233' => 'tar', 'TAR622G0904' => 'tar', 'TAR622G0959' => 'tar', 'TAR625G0235' => 'tar', 'TAR629G0360' => 'tar', 'TAR629G1671' => 'tar', 'TAR629G1866' => 'tar', 'THA.LOC104805555' => 'tha', 'THA.LOC104815216' => 'tha', 'THA.LOC104822178' => 'tha', 'THA.LOC104822710' => 'tha', 'THA.LOC104825719' => 'tha', 'THA.LOC104826508' => 'tha', 'Thecc.01G078400' => 'tca', 'Thecc.02G363000' => 'tca', 'Thecc.04G140200' => 'tca', 'Thhalv10003578m.g' => 'esa', 'Thhalv10006601m.g' => 'esa', 'Thhalv10018034m.g' => 'esa', 'Thhalv10019562m.g' => 'esa', 'TPR.G10013' => 'tpr', 'TPR.G3699' => 'tpr', 'TPR.G4495' => 'tpr', 'TWI31G0763' => 'twi', 'TWI31G1272' => 'twi', 'TWI53G1363' => 'twi', 'TWI63G0078' => 'twi', 'TWI74G0426' => 'twi', 'TWI77G0068' => 'twi', 'TWI79G1631' => 'twi', 'unitig_0.g494' => 'ugi', 'unitig_22.g6546' => 'ugi', 'unitig_8.g3263' => 'ugi', 'unitig_8.g3264' => 'ugi', 'unitig_899.g15128' => 'ugi', 'vmacro01359' => 'vma', 'vmacro05373' => 'vma', 'vmacro05374' => 'vma', 'vmacro18103' => 'vma', 'VMungo0251G3305' => 'vmu', 'VMungo1215G1277' => 'vmu', 'VMungo1383G0213' => 'vmu', 'Zm00001eb152080' => 'zma', 'Zm00001eb188670' => 'zma', 'Zm00001eb252350' => 'zma', 'Zm00001eb288610' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001377' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001377' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001377' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001377' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001377', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '454', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p04840' => 'bna', 'A02p14090' => 'bna', 'A02p15350' => 'bna', 'A06p08530' => 'bna', 'A07p33840' => 'bna', 'A07p35170' => 'bna', 'A09p09150' => 'bna', 'Aa31LG1G1390' => 'aar', 'Aa31LG1G16300' => 'aar', 'Aa31LG2G3600' => 'aar', 'Aa31LG2G3610' => 'aar', 'Aa31sc79G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5167' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.551' => 'aag', 'Actinidia11953' => 'ach', 'Actinidia13686' => 'ach', 'Actinidia13687' => 'ach', 'Actinidia13688' => 'ach', 'Actinidia14837' => 'ach', 'Actinidia14838' => 'ach', 'Actinidia14839' => 'ach', 'Actinidia16605' => 'ach', 'Actinidia17619' => 'ach', 'Actinidia26291' => 'ach', 'Actinidia26292' => 'ach', 'Actinidia36410' => 'ach', 'Actinidia36411' => 'ach', 'Actinidia38404' => 'ach', 'Ah.03g138000' => 'amhyb', 'Ah.10g037470' => 'amhyb', 'Ah.16g102090' => 'amhyb', 'AL1G24910' => 'aly', 'AL2G25750' => 'aly', 'AL2G27740' => 'aly', 'AL6G50880' => 'aly', 'AL8G43490' => 'aly', 'Aqoxy3G00643' => 'aox', 'Aqoxy3G02689_Aqoxy3G02690' => 'aox', 'Aqoxy3G03368' => 'aox', 'Aqoxy5G00825' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15YI41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CMW6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FD4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90HUEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98QD99' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AYA763' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP8NJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGXB7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0PK62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA1KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYT0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLH8ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN41X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL6B48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3TKD3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SERK2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8DCP7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPT71U' => 'arhy', 'AT1G13220' => 'ath', 'AT1G67230' => 'ath', 'AT1G68790' => 'ath', 'AT5G65770' => 'ath', 'AT5G65780' => 'ath', 'ATR0598G143' => 'atr', 'ATR0807G122' => 'atr', 'Atru.chr11.1383' => 'acertr', 'Atru.chr11.1384' => 'acertr', 'Atru.chr3.1079' => 'acertr', 'Atru.chr6.468' => 'acertr', 'Atru.chr6.469' => 'acertr', 'Atru.chr8.798' => 'acertr', 'AUR62002935' => 'cqu', 'AUR62003155' => 'cqu', 'AUR62007744' => 'cqu', 'AUR62007977' => 'cqu', 'AUR62008955' => 'cqu', 'BcaB03g15212' => 'bca', 'BcaB04g20027' => 'bca', 'BcaB05g24249' => 'bca', 'BcaB05g24250' => 'bca', 'BcaB05g24411' => 'bca', 'BcaC01g02835' => 'bca', 'BcaC03g14819' => 'bca', 'BcaC03g14987' => 'bca', 'BcaC04g23249' => 'bca', 'BcaC06g31708' => 'bca', 'BcaC08g46149' => 'bca', 'BolC2t08423H' => 'bol', 'BolC2t08598H' => 'bol', 'BolC3t18254H' => 'bol', 'BolC5t29759H' => 'bol', 'BolC6t39131H' => 'bol', 'BolC9t53964H' => 'bol', 'BraA02t06472Z' => 'bra', 'BraA02t06595Z' => 'bra', 'BraA06t24048Z' => 'bra', 'BraA07t31010Z' => 'bra', 'BraA09t36567Z' => 'bra', 'C02p22700' => 'bna', 'C02p25200' => 'bna', 'C02p41450' => 'bna', 'C03p59890' => 'bna', 'C05p10130' => 'bna', 'C05p31320' => 'bna', 'C06p43050' => 'bna', 'C09p10670' => 'bna', 'CAN.G1343.20' => 'can', 'CAN.G153.19' => 'can', 'CAN.G497.7' => 'can', 'CANSAT01G3006' => 'cansat', 'CANSAT11G1821' => 'cansat', 'CANSAT64G1104' => 'cansat', 'CARHR013600' => 'chi', 'CARHR059690' => 'chi', 'CARHR061610' => 'chi', 'CARHR279770' => 'chi', 'Carub.0001s1295' => 'cru', 'Carub.0002s1351' => 'cru', 'Carub.0002s1535' => 'cru', 'Carub.0008s2667' => 'cru', 'Ca_04307_v3' => 'car', 'Ca_22089_v3' => 'car', 'Ca_26149_v3' => 'car', 'Ca_26150_v3' => 'car', 'CBR_g27897' => 'cbr', 'Cc07_g05040' => 'ccan', 'Cc07_g07520' => 'ccan', 'Cc11_g10760' => 'ccan', 'CDE04G2677' => 'cde', 'CDE06G1107' => 'cde', 'CDE06G2305' => 'cde', 'CDE06G2647' => 'cde', 'CDE07G1053' => 'cde', 'CDE07G1824' => 'cde', 'CDE10G1132' => 'cde', 'CDE10G1177' => 'cde', 'Cfa007959' => 'cfa', 'Cfa009251' => 'cfa', 'Cfa018650' => 'cfa', 'Ciclev10013467m.g' => 'ccl', 'Ciclev10024751m.g' => 'ccl', 'Ciclev10030538m.g' => 'ccl', 'CiPaw.03G005400' => 'cil', 'CiPaw.04G003600' => 'cil', 'CiPaw.07G038400' => 'cil', 'CiPaw.08G149100' => 'cil', 'CiPaw.15G002200' => 'cil', 'ClCG01G005770' => 'cla', 'ClCG01G017910' => 'cla', 'ClCG11G005290' => 'cla', 'COL.COLO4_09721' => 'col', 'COL.COLO4_09722' => 'col', 'COL.COLO4_16205' => 'col', 'Cpa.g.c42160' => 'cpa', 'Cpa.g.sc1.235' => 'cpa', 'Cpa.g.sc129.57' => 'cpa', 'Cpa.g.sc179.33' => 'cpa', 'Cpa.g.sc4.201' => 'cpa', 'CsaV3_5G028920' => 'csa', 'CsaV3_5G039060' => 'csa', 'CsaV3_6G044430' => 'csa', 'CSS0006423' => 'camsi', 'CSS0008216' => 'camsi', 'CSS0008376' => 'camsi', 'CSS0016620' => 'camsi', 'CSS0018350' => 'camsi', 'CSS0019307' => 'camsi', 'CSS0028126' => 'camsi', 'CSS0029331' => 'camsi', 'CSS0046282' => 'camsi', 'DCAR_007220' => 'dca', 'DCAR_007520' => 'dca', 'DCAR_010974' => 'dca', 'DCAR_021833' => 'dca', 'DCAR_025832' => 'dca', 'DCAR_030093' => 'dca', 'Dinv05807' => 'din', 'Dinv16523' => 'din', 'Dinv23061' => 'din', 'Dinv26969' => 'din', 'Dinv26970' => 'din', 'Dinv34858' => 'din', 'Dinv34859' => 'din', 'Duzib138G0922' => 'dzi', 'Duzib147G1298' => 'dzi', 'Duzib251G0529' => 'dzi', 'Duzib264G0128' => 'dzi', 'ECA232G1830' => 'eca', 'ECA234G0497' => 'eca', 'ECA238G3630' => 'eca', 'EL10Ac2g04618' => 'bvu', 'EL10Ac6g14522' => 'bvu', 'EL10Ac6g14944' => 'bvu', 'Eucgr.A00773' => 'egr', 'Eucgr.G02361' => 'egr', 'Eucgr.I00661' => 'egr', 'Eucgr.J01462' => 'egr', 'FAN02G0241' => 'fan', 'FAN05G5792' => 'fan', 'FAN07G2260' => 'fan', 'FAN09G4253' => 'fan', 'FAN12G3823' => 'fan', 'FAN14G3399' => 'fan', 'FAN17G1780' => 'fan', 'FAN19G2689' => 'fan', 'FAN22G2204' => 'fan', 'FAN23G0417' => 'fan', 'FAN26G2388' => 'fan', 'FAN28G2309' => 'fan', 'FvH4_1g18512' => 'fve', 'FvH4_4g28241' => 'fve', 'FvH4_6g45461' => 'fve', 'Glyma.01G090002' => 'gma', 'Glyma.01G090102' => 'gma', 'Glyma.01G196400' => 'gma', 'Glyma.02G101800' => 'gma', 'Glyma.05G109300' => 'gma', 'Glyma.08G256300' => 'gma', 'Glyma.11G045200' => 'gma', 'Glyma.17G157900' => 'gma', 'Glyma.18G280500' => 'gma', 'Gohir.A02G148800' => 'ghi', 'Gohir.A05G393701' => 'ghi', 'Gohir.A07G164400' => 'ghi', 'Gohir.A07G164500' => 'ghi', 'Gohir.A11G161100' => 'ghi', 'Gohir.A11G211100' => 'ghi', 'Gohir.A12G172400' => 'ghi', 'Gohir.A13G086580' => 'ghi', 'Gohir.D03G031500' => 'ghi', 'Gohir.D03G055400' => 'ghi', 'Gohir.D07G179800' => 'ghi', 'Gohir.D11G167400' => 'ghi', 'Gohir.D11G212000' => 'ghi', 'Gohir.D12G174900' => 'ghi', 'Gorai.001G200600' => 'gra', 'Gorai.003G033100' => 'gra', 'Gorai.007G178500' => 'gra', 'Gorai.007G227800' => 'gra', 'Gorai.008G187500' => 'gra', 'GSVIVG01007428001' => 'vvi', 'GSVIVG01011972001' => 'vvi', 'GSVIVG01031076001' => 'vvi', 'HanXRQChr07g0200201' => 'han', 'HanXRQChr09g0261551' => 'han', 'HanXRQChr14g0452321' => 'han', 'HanXRQChr14g0452361' => 'han', 'HanXRQChr16g0528821' => 'han', 'HanXRQChr17g0567751' => 'han', 'Haze_03970' => 'cav', 'Haze_14110' => 'cav', 'Haze_14112' => 'cav', 'Haze_17417' => 'cav', 'Hma1.2p1_0136F.1_g062050' => 'hma', 'Hma1.2p1_0477F.1_g161000' => 'hma', 'Hma1.2p1_0477F.1_g161010' => 'hma', 'Hma1.2p1_0477F.1_g161020' => 'hma', 'Hma1.2p1_0605F.1_g187860' => 'hma', 'HPP92_017692' => 'vpl', 'HPP92_021838' => 'vpl', 'HPP92_021839' => 'vpl', 'HPP92_024702' => 'vpl', 'Hund05774' => 'sun', 'Hund13740' => 'sun', 'Hund16591' => 'sun', 'Hund25112' => 'sun', 'Lalb_Chr04g0255011' => 'lal', 'Lalb_Chr09g0335511' => 'lal', 'Lalb_Chr16g0379031' => 'lal', 'Lalb_Chr17g0336541' => 'lal', 'Lj1g0026501' => 'lja', 'Lj2g0006914' => 'lja', 'Lj4A168T50' => 'lonja', 'Lj4g0025248' => 'lja', 'Lj6C767T7' => 'lonja', 'Lj6C767T8' => 'lonja', 'Lj7A9G80' => 'lonja', 'Lsat_1_v5_gn_2_86661' => 'lsa', 'Lsat_1_v5_gn_4_159441' => 'lsa', 'Lsat_1_v5_gn_4_19300' => 'lsa', 'Manes.01G107600' => 'mes', 'Manes.06G074000' => 'mes', 'Manes.12G118800' => 'mes', 'Manes.13G107600' => 'mes', 'Mapoly0160s0011' => 'mpo', 'MBI16_g11022_MAGBIO' => 'mbi', 'MBI16_g11023_MAGBIO' => 'mbi', 'MD02G1191400' => 'mdo', 'MD09G1082900' => 'mdo', 'MD13G1048500' => 'mdo', 'MD15G1302600' => 'mdo', 'MD16G1049800' => 'mdo', 'Medtr4g097580' => 'mtr', 'Medtr5g052150' => 'mtr', 'Medtr5g052200' => 'mtr', 'Medtr6g015270' => 'mtr', 'Medtr6g015285' => 'mtr', 'Medtr7g018610' => 'mtr', 'Medtr7g116170' => 'mtr', 'MELO3C005352.2' => 'cme', 'MELO3C007665.2' => 'cme', 'MELO3C022065.2' => 'cme', 'Migut.H00316' => 'egut', 'Migut.H00533' => 'egut', 'Migut.L01107' => 'egut', 'MSTRG.23648' => 'ama', 'MSTRG.23825' => 'ama', 'MSTRG.2942' => 'ama', 'MSTRG.810' => 'ama', 'Nitab4.5_0000597g0010' => 'nta', 'Nitab4.5_0002390g0010' => 'nta', 'Nitab4.5_0003461g0040' => 'nta', 'Nitab4.5_0003478g0030' => 'nta', 'Nitab4.5_0003990g0020' => 'nta', 'Nitab4.5_0004420g0060' => 'nta', 'Nitab4.5_0004487g0020' => 'nta', 'Nitab4.5_0009272g0010' => 'nta', 'Nn3g17678' => 'nnu', 'Nn4g23682' => 'nnu', 'Nn6g34551' => 'nnu', 'Oeu007110.3' => 'oeu', 'Oeu041875.1' => 'oeu', 'Oeu061811.2' => 'oeu', 'Os01g0767000' => 'osa', 'Os02g0709900' => 'osa', 'Os02g0710102' => 'osa', 'Peaxi162Scf00004g10118' => 'pax', 'Peaxi162Scf00096g01717' => 'pax', 'Peaxi162Scf00479g00119' => 'pax', 'Peaxi162Scf01056g00241' => 'pax', 'PGR004G0636' => 'pgr', 'PGR042G1271' => 'pgr', 'PGR119G1444' => 'pgr', 'PGSC0003DMG400003363' => 'stu', 'PGSC0003DMG400021400' => 'stu', 'PGSC0003DMG402010047' => 'stu', 'Phvul.003G025500' => 'pvu', 'Phvul.003G232200' => 'pvu', 'Phvul.008G020600' => 'pvu', 'Potri.008G114800' => 'ptr', 'Potri.012G034300' => 'ptr', 'Potri.015G024900' => 'ptr', 'Potri.017G111400' => 'ptr', 'Pp3c1_1360' => 'ppa', 'Pp3c2_34830' => 'ppa', 'Prupe.1G303700' => 'ppe', 'Prupe.3G240800' => 'ppe', 'Prupe.6G214100' => 'ppe', 'Psat1g067200' => 'psa', 'Psat3g191560' => 'psa', 'Psat4g080640' => 'psa', 'PSO017G3294' => 'pso', 'PSO017G3961' => 'pso', 'PSO017G4742' => 'pso', 'PSO063G3921' => 'pso', 'PSO170G4358' => 'pso', 'PSO478G2613' => 'pso', 'PSO832G1490' => 'pso', 'QL01p000940' => 'qlo', 'QL01p000944' => 'qlo', 'QL01p000954' => 'qlo', 'QL02p053039' => 'qlo', 'QL06p038381' => 'qlo', 'RcHm_v2.0_Chr2g0109151' => 'rch', 'RcHm_v2.0_Chr2g0163401' => 'rch', 'RcHm_v2.0_Chr4g0436081' => 'rch', 'RcHm_v2.0_Chr4g0436091' => 'rch', 'RcHm_v2.0_Chr4g0436101' => 'rch', 'RcHm_v2.0_Chr7g0226101' => 'rch', 'Rhsim06G0209200' => 'rsi', 'Rhsim08G0079900' => 'rsi', 'Rhsim10G0092900' => 'rsi', 'Rhsim12G0080700' => 'rsi', 'Sabra08G0087000' => 'sbr', 'Sabra12G0023500' => 'sbr', 'SalBow1G0002' => 'sbo', 'SalBow1G5670' => 'sbo', 'SalBow1G6161' => 'sbo', 'SalBow3G2766' => 'sbo', 'SalBow8G4999' => 'sbo', 'Sc11g0002990' => 'sci', 'Sc11g0008120' => 'sci', 'Sc16g0000890' => 'sci', 'Sed0000445' => 'sed', 'Sed0011516' => 'sed', 'Sed0013236' => 'sed', 'Sed0017705' => 'sed', 'Sed0021007' => 'sed', 'Sed0026492' => 'sed', 'SEGI_02593' => 'sgi', 'SEGI_18919' => 'sgi', 'SEGI_31543' => 'sgi', 'SGA_v2.0_scaffold121G33074' => 'sas', 'SGA_v2.0_scaffold204G41653' => 'sas', 'SGA_v2.0_scaffold335G49141' => 'sas', 'SGA_v2.0_scaffold36G14511' => 'sas', 'SMO223G0040' => 'smo', 'Solyc02g089800.3' => 'sly', 'Solyc02g091960.4' => 'sly', 'Solyc03g045050.4' => 'sly', 'Sopen02g034490' => 'spe', 'Sopen02g036530' => 'spe', 'Sopen03g009490' => 'spe', 'Sp1g11740' => 'spa', 'Sp2g28870' => 'spa', 'Sp5g22170' => 'spa', 'TAR371G0717' => 'tar', 'TAR381G1251' => 'tar', 'TAR622G0233' => 'tar', 'TAR622G0904' => 'tar', 'TAR622G0959' => 'tar', 'TAR625G0235' => 'tar', 'TAR629G0360' => 'tar', 'TAR629G1671' => 'tar', 'TAR629G1866' => 'tar', 'THA.LOC104805555' => 'tha', 'THA.LOC104815216' => 'tha', 'THA.LOC104822178' => 'tha', 'THA.LOC104822710' => 'tha', 'THA.LOC104825719' => 'tha', 'THA.LOC104826508' => 'tha', 'Thecc.01G078400' => 'tca', 'Thecc.02G363000' => 'tca', 'Thecc.04G140200' => 'tca', 'Thhalv10003578m.g' => 'esa', 'Thhalv10006601m.g' => 'esa', 'Thhalv10018034m.g' => 'esa', 'Thhalv10019562m.g' => 'esa', 'TPR.G10013' => 'tpr', 'TPR.G3699' => 'tpr', 'TPR.G4495' => 'tpr', 'TWI31G0763' => 'twi', 'TWI31G1272' => 'twi', 'TWI53G1363' => 'twi', 'TWI63G0078' => 'twi', 'TWI74G0426' => 'twi', 'TWI77G0068' => 'twi', 'TWI79G1631' => 'twi', 'unitig_0.g494' => 'ugi', 'unitig_22.g6546' => 'ugi', 'unitig_8.g3263' => 'ugi', 'unitig_8.g3264' => 'ugi', 'unitig_899.g15128' => 'ugi', 'vmacro01359' => 'vma', 'vmacro05373' => 'vma', 'vmacro05374' => 'vma', 'vmacro18103' => 'vma', 'VMungo0251G3305' => 'vmu', 'VMungo1215G1277' => 'vmu', 'VMungo1383G0213' => 'vmu', 'Zm00001eb152080' => 'zma', 'Zm00001eb188670' => 'zma', 'Zm00001eb252350' => 'zma', 'Zm00001eb288610' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001377', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001377' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001377', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '454', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001377' ) ), 'genes' => array( 'A01p04840' => 'bna', 'A02p14090' => 'bna', 'A02p15350' => 'bna', 'A06p08530' => 'bna', 'A07p33840' => 'bna', 'A07p35170' => 'bna', 'A09p09150' => 'bna', 'Aa31LG1G1390' => 'aar', 'Aa31LG1G16300' => 'aar', 'Aa31LG2G3600' => 'aar', 'Aa31LG2G3610' => 'aar', 'Aa31sc79G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5167' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.551' => 'aag', 'Actinidia11953' => 'ach', 'Actinidia13686' => 'ach', 'Actinidia13687' => 'ach', 'Actinidia13688' => 'ach', 'Actinidia14837' => 'ach', 'Actinidia14838' => 'ach', 'Actinidia14839' => 'ach', 'Actinidia16605' => 'ach', 'Actinidia17619' => 'ach', 'Actinidia26291' => 'ach', 'Actinidia26292' => 'ach', 'Actinidia36410' => 'ach', 'Actinidia36411' => 'ach', 'Actinidia38404' => 'ach', 'Ah.03g138000' => 'amhyb', 'Ah.10g037470' => 'amhyb', 'Ah.16g102090' => 'amhyb', 'AL1G24910' => 'aly', 'AL2G25750' => 'aly', 'AL2G27740' => 'aly', 'AL6G50880' => 'aly', 'AL8G43490' => 'aly', 'Aqoxy3G00643' => 'aox', 'Aqoxy3G02689_Aqoxy3G02690' => 'aox', 'Aqoxy3G03368' => 'aox', 'Aqoxy5G00825' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15YI41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CMW6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FD4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90HUEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98QD99' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AYA763' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP8NJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGXB7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0PK62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA1KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYT0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLH8ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN41X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL6B48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3TKD3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SERK2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8DCP7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPT71U' => 'arhy', 'AT1G13220' => 'ath', 'AT1G67230' => 'ath', 'AT1G68790' => 'ath', 'AT5G65770' => 'ath', 'AT5G65780' => 'ath', 'ATR0598G143' => 'atr', 'ATR0807G122' => 'atr', 'Atru.chr11.1383' => 'acertr', 'Atru.chr11.1384' => 'acertr', 'Atru.chr3.1079' => 'acertr', 'Atru.chr6.468' => 'acertr', 'Atru.chr6.469' => 'acertr', 'Atru.chr8.798' => 'acertr', 'AUR62002935' => 'cqu', 'AUR62003155' => 'cqu', 'AUR62007744' => 'cqu', 'AUR62007977' => 'cqu', 'AUR62008955' => 'cqu', 'BcaB03g15212' => 'bca', 'BcaB04g20027' => 'bca', 'BcaB05g24249' => 'bca', 'BcaB05g24250' => 'bca', 'BcaB05g24411' => 'bca', 'BcaC01g02835' => 'bca', 'BcaC03g14819' => 'bca', 'BcaC03g14987' => 'bca', 'BcaC04g23249' => 'bca', 'BcaC06g31708' => 'bca', 'BcaC08g46149' => 'bca', 'BolC2t08423H' => 'bol', 'BolC2t08598H' => 'bol', 'BolC3t18254H' => 'bol', 'BolC5t29759H' => 'bol', 'BolC6t39131H' => 'bol', 'BolC9t53964H' => 'bol', 'BraA02t06472Z' => 'bra', 'BraA02t06595Z' => 'bra', 'BraA06t24048Z' => 'bra', 'BraA07t31010Z' => 'bra', 'BraA09t36567Z' => 'bra', 'C02p22700' => 'bna', 'C02p25200' => 'bna', 'C02p41450' => 'bna', 'C03p59890' => 'bna', 'C05p10130' => 'bna', 'C05p31320' => 'bna', 'C06p43050' => 'bna', 'C09p10670' => 'bna', 'CAN.G1343.20' => 'can', 'CAN.G153.19' => 'can', 'CAN.G497.7' => 'can', 'CANSAT01G3006' => 'cansat', 'CANSAT11G1821' => 'cansat', 'CANSAT64G1104' => 'cansat', 'CARHR013600' => 'chi', 'CARHR059690' => 'chi', 'CARHR061610' => 'chi', 'CARHR279770' => 'chi', 'Carub.0001s1295' => 'cru', 'Carub.0002s1351' => 'cru', 'Carub.0002s1535' => 'cru', 'Carub.0008s2667' => 'cru', 'Ca_04307_v3' => 'car', 'Ca_22089_v3' => 'car', 'Ca_26149_v3' => 'car', 'Ca_26150_v3' => 'car', 'CBR_g27897' => 'cbr', 'Cc07_g05040' => 'ccan', 'Cc07_g07520' => 'ccan', 'Cc11_g10760' => 'ccan', 'CDE04G2677' => 'cde', 'CDE06G1107' => 'cde', 'CDE06G2305' => 'cde', 'CDE06G2647' => 'cde', 'CDE07G1053' => 'cde', 'CDE07G1824' => 'cde', 'CDE10G1132' => 'cde', 'CDE10G1177' => 'cde', 'Cfa007959' => 'cfa', 'Cfa009251' => 'cfa', 'Cfa018650' => 'cfa', 'Ciclev10013467m.g' => 'ccl', 'Ciclev10024751m.g' => 'ccl', 'Ciclev10030538m.g' => 'ccl', 'CiPaw.03G005400' => 'cil', 'CiPaw.04G003600' => 'cil', 'CiPaw.07G038400' => 'cil', 'CiPaw.08G149100' => 'cil', 'CiPaw.15G002200' => 'cil', 'ClCG01G005770' => 'cla', 'ClCG01G017910' => 'cla', 'ClCG11G005290' => 'cla', 'COL.COLO4_09721' => 'col', 'COL.COLO4_09722' => 'col', 'COL.COLO4_16205' => 'col', 'Cpa.g.c42160' => 'cpa', 'Cpa.g.sc1.235' => 'cpa', 'Cpa.g.sc129.57' => 'cpa', 'Cpa.g.sc179.33' => 'cpa', 'Cpa.g.sc4.201' => 'cpa', 'CsaV3_5G028920' => 'csa', 'CsaV3_5G039060' => 'csa', 'CsaV3_6G044430' => 'csa', 'CSS0006423' => 'camsi', 'CSS0008216' => 'camsi', 'CSS0008376' => 'camsi', 'CSS0016620' => 'camsi', 'CSS0018350' => 'camsi', 'CSS0019307' => 'camsi', 'CSS0028126' => 'camsi', 'CSS0029331' => 'camsi', 'CSS0046282' => 'camsi', 'DCAR_007220' => 'dca', 'DCAR_007520' => 'dca', 'DCAR_010974' => 'dca', 'DCAR_021833' => 'dca', 'DCAR_025832' => 'dca', 'DCAR_030093' => 'dca', 'Dinv05807' => 'din', 'Dinv16523' => 'din', 'Dinv23061' => 'din', 'Dinv26969' => 'din', 'Dinv26970' => 'din', 'Dinv34858' => 'din', 'Dinv34859' => 'din', 'Duzib138G0922' => 'dzi', 'Duzib147G1298' => 'dzi', 'Duzib251G0529' => 'dzi', 'Duzib264G0128' => 'dzi', 'ECA232G1830' => 'eca', 'ECA234G0497' => 'eca', 'ECA238G3630' => 'eca', 'EL10Ac2g04618' => 'bvu', 'EL10Ac6g14522' => 'bvu', 'EL10Ac6g14944' => 'bvu', 'Eucgr.A00773' => 'egr', 'Eucgr.G02361' => 'egr', 'Eucgr.I00661' => 'egr', 'Eucgr.J01462' => 'egr', 'FAN02G0241' => 'fan', 'FAN05G5792' => 'fan', 'FAN07G2260' => 'fan', 'FAN09G4253' => 'fan', 'FAN12G3823' => 'fan', 'FAN14G3399' => 'fan', 'FAN17G1780' => 'fan', 'FAN19G2689' => 'fan', 'FAN22G2204' => 'fan', 'FAN23G0417' => 'fan', 'FAN26G2388' => 'fan', 'FAN28G2309' => 'fan', 'FvH4_1g18512' => 'fve', 'FvH4_4g28241' => 'fve', 'FvH4_6g45461' => 'fve', 'Glyma.01G090002' => 'gma', 'Glyma.01G090102' => 'gma', 'Glyma.01G196400' => 'gma', 'Glyma.02G101800' => 'gma', 'Glyma.05G109300' => 'gma', 'Glyma.08G256300' => 'gma', 'Glyma.11G045200' => 'gma', 'Glyma.17G157900' => 'gma', 'Glyma.18G280500' => 'gma', 'Gohir.A02G148800' => 'ghi', 'Gohir.A05G393701' => 'ghi', 'Gohir.A07G164400' => 'ghi', 'Gohir.A07G164500' => 'ghi', 'Gohir.A11G161100' => 'ghi', 'Gohir.A11G211100' => 'ghi', 'Gohir.A12G172400' => 'ghi', 'Gohir.A13G086580' => 'ghi', 'Gohir.D03G031500' => 'ghi', 'Gohir.D03G055400' => 'ghi', 'Gohir.D07G179800' => 'ghi', 'Gohir.D11G167400' => 'ghi', 'Gohir.D11G212000' => 'ghi', 'Gohir.D12G174900' => 'ghi', 'Gorai.001G200600' => 'gra', 'Gorai.003G033100' => 'gra', 'Gorai.007G178500' => 'gra', 'Gorai.007G227800' => 'gra', 'Gorai.008G187500' => 'gra', 'GSVIVG01007428001' => 'vvi', 'GSVIVG01011972001' => 'vvi', 'GSVIVG01031076001' => 'vvi', 'HanXRQChr07g0200201' => 'han', 'HanXRQChr09g0261551' => 'han', 'HanXRQChr14g0452321' => 'han', 'HanXRQChr14g0452361' => 'han', 'HanXRQChr16g0528821' => 'han', 'HanXRQChr17g0567751' => 'han', 'Haze_03970' => 'cav', 'Haze_14110' => 'cav', 'Haze_14112' => 'cav', 'Haze_17417' => 'cav', 'Hma1.2p1_0136F.1_g062050' => 'hma', 'Hma1.2p1_0477F.1_g161000' => 'hma', 'Hma1.2p1_0477F.1_g161010' => 'hma', 'Hma1.2p1_0477F.1_g161020' => 'hma', 'Hma1.2p1_0605F.1_g187860' => 'hma', 'HPP92_017692' => 'vpl', 'HPP92_021838' => 'vpl', 'HPP92_021839' => 'vpl', 'HPP92_024702' => 'vpl', 'Hund05774' => 'sun', 'Hund13740' => 'sun', 'Hund16591' => 'sun', 'Hund25112' => 'sun', 'Lalb_Chr04g0255011' => 'lal', 'Lalb_Chr09g0335511' => 'lal', 'Lalb_Chr16g0379031' => 'lal', 'Lalb_Chr17g0336541' => 'lal', 'Lj1g0026501' => 'lja', 'Lj2g0006914' => 'lja', 'Lj4A168T50' => 'lonja', 'Lj4g0025248' => 'lja', 'Lj6C767T7' => 'lonja', 'Lj6C767T8' => 'lonja', 'Lj7A9G80' => 'lonja', 'Lsat_1_v5_gn_2_86661' => 'lsa', 'Lsat_1_v5_gn_4_159441' => 'lsa', 'Lsat_1_v5_gn_4_19300' => 'lsa', 'Manes.01G107600' => 'mes', 'Manes.06G074000' => 'mes', 'Manes.12G118800' => 'mes', 'Manes.13G107600' => 'mes', 'Mapoly0160s0011' => 'mpo', 'MBI16_g11022_MAGBIO' => 'mbi', 'MBI16_g11023_MAGBIO' => 'mbi', 'MD02G1191400' => 'mdo', 'MD09G1082900' => 'mdo', 'MD13G1048500' => 'mdo', 'MD15G1302600' => 'mdo', 'MD16G1049800' => 'mdo', 'Medtr4g097580' => 'mtr', 'Medtr5g052150' => 'mtr', 'Medtr5g052200' => 'mtr', 'Medtr6g015270' => 'mtr', 'Medtr6g015285' => 'mtr', 'Medtr7g018610' => 'mtr', 'Medtr7g116170' => 'mtr', 'MELO3C005352.2' => 'cme', 'MELO3C007665.2' => 'cme', 'MELO3C022065.2' => 'cme', 'Migut.H00316' => 'egut', 'Migut.H00533' => 'egut', 'Migut.L01107' => 'egut', 'MSTRG.23648' => 'ama', 'MSTRG.23825' => 'ama', 'MSTRG.2942' => 'ama', 'MSTRG.810' => 'ama', 'Nitab4.5_0000597g0010' => 'nta', 'Nitab4.5_0002390g0010' => 'nta', 'Nitab4.5_0003461g0040' => 'nta', 'Nitab4.5_0003478g0030' => 'nta', 'Nitab4.5_0003990g0020' => 'nta', 'Nitab4.5_0004420g0060' => 'nta', 'Nitab4.5_0004487g0020' => 'nta', 'Nitab4.5_0009272g0010' => 'nta', 'Nn3g17678' => 'nnu', 'Nn4g23682' => 'nnu', 'Nn6g34551' => 'nnu', 'Oeu007110.3' => 'oeu', 'Oeu041875.1' => 'oeu', 'Oeu061811.2' => 'oeu', 'Os01g0767000' => 'osa', 'Os02g0709900' => 'osa', 'Os02g0710102' => 'osa', 'Peaxi162Scf00004g10118' => 'pax', 'Peaxi162Scf00096g01717' => 'pax', 'Peaxi162Scf00479g00119' => 'pax', 'Peaxi162Scf01056g00241' => 'pax', 'PGR004G0636' => 'pgr', 'PGR042G1271' => 'pgr', 'PGR119G1444' => 'pgr', 'PGSC0003DMG400003363' => 'stu', 'PGSC0003DMG400021400' => 'stu', 'PGSC0003DMG402010047' => 'stu', 'Phvul.003G025500' => 'pvu', 'Phvul.003G232200' => 'pvu', 'Phvul.008G020600' => 'pvu', 'Potri.008G114800' => 'ptr', 'Potri.012G034300' => 'ptr', 'Potri.015G024900' => 'ptr', 'Potri.017G111400' => 'ptr', 'Pp3c1_1360' => 'ppa', 'Pp3c2_34830' => 'ppa', 'Prupe.1G303700' => 'ppe', 'Prupe.3G240800' => 'ppe', 'Prupe.6G214100' => 'ppe', 'Psat1g067200' => 'psa', 'Psat3g191560' => 'psa', 'Psat4g080640' => 'psa', 'PSO017G3294' => 'pso', 'PSO017G3961' => 'pso', 'PSO017G4742' => 'pso', 'PSO063G3921' => 'pso', 'PSO170G4358' => 'pso', 'PSO478G2613' => 'pso', 'PSO832G1490' => 'pso', 'QL01p000940' => 'qlo', 'QL01p000944' => 'qlo', 'QL01p000954' => 'qlo', 'QL02p053039' => 'qlo', 'QL06p038381' => 'qlo', 'RcHm_v2.0_Chr2g0109151' => 'rch', 'RcHm_v2.0_Chr2g0163401' => 'rch', 'RcHm_v2.0_Chr4g0436081' => 'rch', 'RcHm_v2.0_Chr4g0436091' => 'rch', 'RcHm_v2.0_Chr4g0436101' => 'rch', 'RcHm_v2.0_Chr7g0226101' => 'rch', 'Rhsim06G0209200' => 'rsi', 'Rhsim08G0079900' => 'rsi', 'Rhsim10G0092900' => 'rsi', 'Rhsim12G0080700' => 'rsi', 'Sabra08G0087000' => 'sbr', 'Sabra12G0023500' => 'sbr', 'SalBow1G0002' => 'sbo', 'SalBow1G5670' => 'sbo', 'SalBow1G6161' => 'sbo', 'SalBow3G2766' => 'sbo', 'SalBow8G4999' => 'sbo', 'Sc11g0002990' => 'sci', 'Sc11g0008120' => 'sci', 'Sc16g0000890' => 'sci', 'Sed0000445' => 'sed', 'Sed0011516' => 'sed', 'Sed0013236' => 'sed', 'Sed0017705' => 'sed', 'Sed0021007' => 'sed', 'Sed0026492' => 'sed', 'SEGI_02593' => 'sgi', 'SEGI_18919' => 'sgi', 'SEGI_31543' => 'sgi', 'SGA_v2.0_scaffold121G33074' => 'sas', 'SGA_v2.0_scaffold204G41653' => 'sas', 'SGA_v2.0_scaffold335G49141' => 'sas', 'SGA_v2.0_scaffold36G14511' => 'sas', 'SMO223G0040' => 'smo', 'Solyc02g089800.3' => 'sly', 'Solyc02g091960.4' => 'sly', 'Solyc03g045050.4' => 'sly', 'Sopen02g034490' => 'spe', 'Sopen02g036530' => 'spe', 'Sopen03g009490' => 'spe', 'Sp1g11740' => 'spa', 'Sp2g28870' => 'spa', 'Sp5g22170' => 'spa', 'TAR371G0717' => 'tar', 'TAR381G1251' => 'tar', 'TAR622G0233' => 'tar', 'TAR622G0904' => 'tar', 'TAR622G0959' => 'tar', 'TAR625G0235' => 'tar', 'TAR629G0360' => 'tar', 'TAR629G1671' => 'tar', 'TAR629G1866' => 'tar', 'THA.LOC104805555' => 'tha', 'THA.LOC104815216' => 'tha', 'THA.LOC104822178' => 'tha', 'THA.LOC104822710' => 'tha', 'THA.LOC104825719' => 'tha', 'THA.LOC104826508' => 'tha', 'Thecc.01G078400' => 'tca', 'Thecc.02G363000' => 'tca', 'Thecc.04G140200' => 'tca', 'Thhalv10003578m.g' => 'esa', 'Thhalv10006601m.g' => 'esa', 'Thhalv10018034m.g' => 'esa', 'Thhalv10019562m.g' => 'esa', 'TPR.G10013' => 'tpr', 'TPR.G3699' => 'tpr', 'TPR.G4495' => 'tpr', 'TWI31G0763' => 'twi', 'TWI31G1272' => 'twi', 'TWI53G1363' => 'twi', 'TWI63G0078' => 'twi', 'TWI74G0426' => 'twi', 'TWI77G0068' => 'twi', 'TWI79G1631' => 'twi', 'unitig_0.g494' => 'ugi', 'unitig_22.g6546' => 'ugi', 'unitig_8.g3263' => 'ugi', 'unitig_8.g3264' => 'ugi', 'unitig_899.g15128' => 'ugi', 'vmacro01359' => 'vma', 'vmacro05373' => 'vma', 'vmacro05374' => 'vma', 'vmacro18103' => 'vma', 'VMungo0251G3305' => 'vmu', 'VMungo1215G1277' => 'vmu', 'VMungo1383G0213' => 'vmu', 'Zm00001eb152080' => 'zma', 'Zm00001eb188670' => 'zma', 'Zm00001eb252350' => 'zma', 'Zm00001eb288610' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001377' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001377' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001377' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001377' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001377', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '454', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p04840' => 'bna', 'A02p14090' => 'bna', 'A02p15350' => 'bna', 'A06p08530' => 'bna', 'A07p33840' => 'bna', 'A07p35170' => 'bna', 'A09p09150' => 'bna', 'Aa31LG1G1390' => 'aar', 'Aa31LG1G16300' => 'aar', 'Aa31LG2G3600' => 'aar', 'Aa31LG2G3610' => 'aar', 'Aa31sc79G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5167' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.551' => 'aag', 'Actinidia11953' => 'ach', 'Actinidia13686' => 'ach', 'Actinidia13687' => 'ach', 'Actinidia13688' => 'ach', 'Actinidia14837' => 'ach', 'Actinidia14838' => 'ach', 'Actinidia14839' => 'ach', 'Actinidia16605' => 'ach', 'Actinidia17619' => 'ach', 'Actinidia26291' => 'ach', 'Actinidia26292' => 'ach', 'Actinidia36410' => 'ach', 'Actinidia36411' => 'ach', 'Actinidia38404' => 'ach', 'Ah.03g138000' => 'amhyb', 'Ah.10g037470' => 'amhyb', 'Ah.16g102090' => 'amhyb', 'AL1G24910' => 'aly', 'AL2G25750' => 'aly', 'AL2G27740' => 'aly', 'AL6G50880' => 'aly', 'AL8G43490' => 'aly', 'Aqoxy3G00643' => 'aox', 'Aqoxy3G02689_Aqoxy3G02690' => 'aox', 'Aqoxy3G03368' => 'aox', 'Aqoxy5G00825' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15YI41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CMW6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FD4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90HUEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98QD99' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AYA763' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP8NJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGXB7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0PK62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA1KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYT0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLH8ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN41X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL6B48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3TKD3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SERK2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8DCP7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPT71U' => 'arhy', 'AT1G13220' => 'ath', 'AT1G67230' => 'ath', 'AT1G68790' => 'ath', 'AT5G65770' => 'ath', 'AT5G65780' => 'ath', 'ATR0598G143' => 'atr', 'ATR0807G122' => 'atr', 'Atru.chr11.1383' => 'acertr', 'Atru.chr11.1384' => 'acertr', 'Atru.chr3.1079' => 'acertr', 'Atru.chr6.468' => 'acertr', 'Atru.chr6.469' => 'acertr', 'Atru.chr8.798' => 'acertr', 'AUR62002935' => 'cqu', 'AUR62003155' => 'cqu', 'AUR62007744' => 'cqu', 'AUR62007977' => 'cqu', 'AUR62008955' => 'cqu', 'BcaB03g15212' => 'bca', 'BcaB04g20027' => 'bca', 'BcaB05g24249' => 'bca', 'BcaB05g24250' => 'bca', 'BcaB05g24411' => 'bca', 'BcaC01g02835' => 'bca', 'BcaC03g14819' => 'bca', 'BcaC03g14987' => 'bca', 'BcaC04g23249' => 'bca', 'BcaC06g31708' => 'bca', 'BcaC08g46149' => 'bca', 'BolC2t08423H' => 'bol', 'BolC2t08598H' => 'bol', 'BolC3t18254H' => 'bol', 'BolC5t29759H' => 'bol', 'BolC6t39131H' => 'bol', 'BolC9t53964H' => 'bol', 'BraA02t06472Z' => 'bra', 'BraA02t06595Z' => 'bra', 'BraA06t24048Z' => 'bra', 'BraA07t31010Z' => 'bra', 'BraA09t36567Z' => 'bra', 'C02p22700' => 'bna', 'C02p25200' => 'bna', 'C02p41450' => 'bna', 'C03p59890' => 'bna', 'C05p10130' => 'bna', 'C05p31320' => 'bna', 'C06p43050' => 'bna', 'C09p10670' => 'bna', 'CAN.G1343.20' => 'can', 'CAN.G153.19' => 'can', 'CAN.G497.7' => 'can', 'CANSAT01G3006' => 'cansat', 'CANSAT11G1821' => 'cansat', 'CANSAT64G1104' => 'cansat', 'CARHR013600' => 'chi', 'CARHR059690' => 'chi', 'CARHR061610' => 'chi', 'CARHR279770' => 'chi', 'Carub.0001s1295' => 'cru', 'Carub.0002s1351' => 'cru', 'Carub.0002s1535' => 'cru', 'Carub.0008s2667' => 'cru', 'Ca_04307_v3' => 'car', 'Ca_22089_v3' => 'car', 'Ca_26149_v3' => 'car', 'Ca_26150_v3' => 'car', 'CBR_g27897' => 'cbr', 'Cc07_g05040' => 'ccan', 'Cc07_g07520' => 'ccan', 'Cc11_g10760' => 'ccan', 'CDE04G2677' => 'cde', 'CDE06G1107' => 'cde', 'CDE06G2305' => 'cde', 'CDE06G2647' => 'cde', 'CDE07G1053' => 'cde', 'CDE07G1824' => 'cde', 'CDE10G1132' => 'cde', 'CDE10G1177' => 'cde', 'Cfa007959' => 'cfa', 'Cfa009251' => 'cfa', 'Cfa018650' => 'cfa', 'Ciclev10013467m.g' => 'ccl', 'Ciclev10024751m.g' => 'ccl', 'Ciclev10030538m.g' => 'ccl', 'CiPaw.03G005400' => 'cil', 'CiPaw.04G003600' => 'cil', 'CiPaw.07G038400' => 'cil', 'CiPaw.08G149100' => 'cil', 'CiPaw.15G002200' => 'cil', 'ClCG01G005770' => 'cla', 'ClCG01G017910' => 'cla', 'ClCG11G005290' => 'cla', 'COL.COLO4_09721' => 'col', 'COL.COLO4_09722' => 'col', 'COL.COLO4_16205' => 'col', 'Cpa.g.c42160' => 'cpa', 'Cpa.g.sc1.235' => 'cpa', 'Cpa.g.sc129.57' => 'cpa', 'Cpa.g.sc179.33' => 'cpa', 'Cpa.g.sc4.201' => 'cpa', 'CsaV3_5G028920' => 'csa', 'CsaV3_5G039060' => 'csa', 'CsaV3_6G044430' => 'csa', 'CSS0006423' => 'camsi', 'CSS0008216' => 'camsi', 'CSS0008376' => 'camsi', 'CSS0016620' => 'camsi', 'CSS0018350' => 'camsi', 'CSS0019307' => 'camsi', 'CSS0028126' => 'camsi', 'CSS0029331' => 'camsi', 'CSS0046282' => 'camsi', 'DCAR_007220' => 'dca', 'DCAR_007520' => 'dca', 'DCAR_010974' => 'dca', 'DCAR_021833' => 'dca', 'DCAR_025832' => 'dca', 'DCAR_030093' => 'dca', 'Dinv05807' => 'din', 'Dinv16523' => 'din', 'Dinv23061' => 'din', 'Dinv26969' => 'din', 'Dinv26970' => 'din', 'Dinv34858' => 'din', 'Dinv34859' => 'din', 'Duzib138G0922' => 'dzi', 'Duzib147G1298' => 'dzi', 'Duzib251G0529' => 'dzi', 'Duzib264G0128' => 'dzi', 'ECA232G1830' => 'eca', 'ECA234G0497' => 'eca', 'ECA238G3630' => 'eca', 'EL10Ac2g04618' => 'bvu', 'EL10Ac6g14522' => 'bvu', 'EL10Ac6g14944' => 'bvu', 'Eucgr.A00773' => 'egr', 'Eucgr.G02361' => 'egr', 'Eucgr.I00661' => 'egr', 'Eucgr.J01462' => 'egr', 'FAN02G0241' => 'fan', 'FAN05G5792' => 'fan', 'FAN07G2260' => 'fan', 'FAN09G4253' => 'fan', 'FAN12G3823' => 'fan', 'FAN14G3399' => 'fan', 'FAN17G1780' => 'fan', 'FAN19G2689' => 'fan', 'FAN22G2204' => 'fan', 'FAN23G0417' => 'fan', 'FAN26G2388' => 'fan', 'FAN28G2309' => 'fan', 'FvH4_1g18512' => 'fve', 'FvH4_4g28241' => 'fve', 'FvH4_6g45461' => 'fve', 'Glyma.01G090002' => 'gma', 'Glyma.01G090102' => 'gma', 'Glyma.01G196400' => 'gma', 'Glyma.02G101800' => 'gma', 'Glyma.05G109300' => 'gma', 'Glyma.08G256300' => 'gma', 'Glyma.11G045200' => 'gma', 'Glyma.17G157900' => 'gma', 'Glyma.18G280500' => 'gma', 'Gohir.A02G148800' => 'ghi', 'Gohir.A05G393701' => 'ghi', 'Gohir.A07G164400' => 'ghi', 'Gohir.A07G164500' => 'ghi', 'Gohir.A11G161100' => 'ghi', 'Gohir.A11G211100' => 'ghi', 'Gohir.A12G172400' => 'ghi', 'Gohir.A13G086580' => 'ghi', 'Gohir.D03G031500' => 'ghi', 'Gohir.D03G055400' => 'ghi', 'Gohir.D07G179800' => 'ghi', 'Gohir.D11G167400' => 'ghi', 'Gohir.D11G212000' => 'ghi', 'Gohir.D12G174900' => 'ghi', 'Gorai.001G200600' => 'gra', 'Gorai.003G033100' => 'gra', 'Gorai.007G178500' => 'gra', 'Gorai.007G227800' => 'gra', 'Gorai.008G187500' => 'gra', 'GSVIVG01007428001' => 'vvi', 'GSVIVG01011972001' => 'vvi', 'GSVIVG01031076001' => 'vvi', 'HanXRQChr07g0200201' => 'han', 'HanXRQChr09g0261551' => 'han', 'HanXRQChr14g0452321' => 'han', 'HanXRQChr14g0452361' => 'han', 'HanXRQChr16g0528821' => 'han', 'HanXRQChr17g0567751' => 'han', 'Haze_03970' => 'cav', 'Haze_14110' => 'cav', 'Haze_14112' => 'cav', 'Haze_17417' => 'cav', 'Hma1.2p1_0136F.1_g062050' => 'hma', 'Hma1.2p1_0477F.1_g161000' => 'hma', 'Hma1.2p1_0477F.1_g161010' => 'hma', 'Hma1.2p1_0477F.1_g161020' => 'hma', 'Hma1.2p1_0605F.1_g187860' => 'hma', 'HPP92_017692' => 'vpl', 'HPP92_021838' => 'vpl', 'HPP92_021839' => 'vpl', 'HPP92_024702' => 'vpl', 'Hund05774' => 'sun', 'Hund13740' => 'sun', 'Hund16591' => 'sun', 'Hund25112' => 'sun', 'Lalb_Chr04g0255011' => 'lal', 'Lalb_Chr09g0335511' => 'lal', 'Lalb_Chr16g0379031' => 'lal', 'Lalb_Chr17g0336541' => 'lal', 'Lj1g0026501' => 'lja', 'Lj2g0006914' => 'lja', 'Lj4A168T50' => 'lonja', 'Lj4g0025248' => 'lja', 'Lj6C767T7' => 'lonja', 'Lj6C767T8' => 'lonja', 'Lj7A9G80' => 'lonja', 'Lsat_1_v5_gn_2_86661' => 'lsa', 'Lsat_1_v5_gn_4_159441' => 'lsa', 'Lsat_1_v5_gn_4_19300' => 'lsa', 'Manes.01G107600' => 'mes', 'Manes.06G074000' => 'mes', 'Manes.12G118800' => 'mes', 'Manes.13G107600' => 'mes', 'Mapoly0160s0011' => 'mpo', 'MBI16_g11022_MAGBIO' => 'mbi', 'MBI16_g11023_MAGBIO' => 'mbi', 'MD02G1191400' => 'mdo', 'MD09G1082900' => 'mdo', 'MD13G1048500' => 'mdo', 'MD15G1302600' => 'mdo', 'MD16G1049800' => 'mdo', 'Medtr4g097580' => 'mtr', 'Medtr5g052150' => 'mtr', 'Medtr5g052200' => 'mtr', 'Medtr6g015270' => 'mtr', 'Medtr6g015285' => 'mtr', 'Medtr7g018610' => 'mtr', 'Medtr7g116170' => 'mtr', 'MELO3C005352.2' => 'cme', 'MELO3C007665.2' => 'cme', 'MELO3C022065.2' => 'cme', 'Migut.H00316' => 'egut', 'Migut.H00533' => 'egut', 'Migut.L01107' => 'egut', 'MSTRG.23648' => 'ama', 'MSTRG.23825' => 'ama', 'MSTRG.2942' => 'ama', 'MSTRG.810' => 'ama', 'Nitab4.5_0000597g0010' => 'nta', 'Nitab4.5_0002390g0010' => 'nta', 'Nitab4.5_0003461g0040' => 'nta', 'Nitab4.5_0003478g0030' => 'nta', 'Nitab4.5_0003990g0020' => 'nta', 'Nitab4.5_0004420g0060' => 'nta', 'Nitab4.5_0004487g0020' => 'nta', 'Nitab4.5_0009272g0010' => 'nta', 'Nn3g17678' => 'nnu', 'Nn4g23682' => 'nnu', 'Nn6g34551' => 'nnu', 'Oeu007110.3' => 'oeu', 'Oeu041875.1' => 'oeu', 'Oeu061811.2' => 'oeu', 'Os01g0767000' => 'osa', 'Os02g0709900' => 'osa', 'Os02g0710102' => 'osa', 'Peaxi162Scf00004g10118' => 'pax', 'Peaxi162Scf00096g01717' => 'pax', 'Peaxi162Scf00479g00119' => 'pax', 'Peaxi162Scf01056g00241' => 'pax', 'PGR004G0636' => 'pgr', 'PGR042G1271' => 'pgr', 'PGR119G1444' => 'pgr', 'PGSC0003DMG400003363' => 'stu', 'PGSC0003DMG400021400' => 'stu', 'PGSC0003DMG402010047' => 'stu', 'Phvul.003G025500' => 'pvu', 'Phvul.003G232200' => 'pvu', 'Phvul.008G020600' => 'pvu', 'Potri.008G114800' => 'ptr', 'Potri.012G034300' => 'ptr', 'Potri.015G024900' => 'ptr', 'Potri.017G111400' => 'ptr', 'Pp3c1_1360' => 'ppa', 'Pp3c2_34830' => 'ppa', 'Prupe.1G303700' => 'ppe', 'Prupe.3G240800' => 'ppe', 'Prupe.6G214100' => 'ppe', 'Psat1g067200' => 'psa', 'Psat3g191560' => 'psa', 'Psat4g080640' => 'psa', 'PSO017G3294' => 'pso', 'PSO017G3961' => 'pso', 'PSO017G4742' => 'pso', 'PSO063G3921' => 'pso', 'PSO170G4358' => 'pso', 'PSO478G2613' => 'pso', 'PSO832G1490' => 'pso', 'QL01p000940' => 'qlo', 'QL01p000944' => 'qlo', 'QL01p000954' => 'qlo', 'QL02p053039' => 'qlo', 'QL06p038381' => 'qlo', 'RcHm_v2.0_Chr2g0109151' => 'rch', 'RcHm_v2.0_Chr2g0163401' => 'rch', 'RcHm_v2.0_Chr4g0436081' => 'rch', 'RcHm_v2.0_Chr4g0436091' => 'rch', 'RcHm_v2.0_Chr4g0436101' => 'rch', 'RcHm_v2.0_Chr7g0226101' => 'rch', 'Rhsim06G0209200' => 'rsi', 'Rhsim08G0079900' => 'rsi', 'Rhsim10G0092900' => 'rsi', 'Rhsim12G0080700' => 'rsi', 'Sabra08G0087000' => 'sbr', 'Sabra12G0023500' => 'sbr', 'SalBow1G0002' => 'sbo', 'SalBow1G5670' => 'sbo', 'SalBow1G6161' => 'sbo', 'SalBow3G2766' => 'sbo', 'SalBow8G4999' => 'sbo', 'Sc11g0002990' => 'sci', 'Sc11g0008120' => 'sci', 'Sc16g0000890' => 'sci', 'Sed0000445' => 'sed', 'Sed0011516' => 'sed', 'Sed0013236' => 'sed', 'Sed0017705' => 'sed', 'Sed0021007' => 'sed', 'Sed0026492' => 'sed', 'SEGI_02593' => 'sgi', 'SEGI_18919' => 'sgi', 'SEGI_31543' => 'sgi', 'SGA_v2.0_scaffold121G33074' => 'sas', 'SGA_v2.0_scaffold204G41653' => 'sas', 'SGA_v2.0_scaffold335G49141' => 'sas', 'SGA_v2.0_scaffold36G14511' => 'sas', 'SMO223G0040' => 'smo', 'Solyc02g089800.3' => 'sly', 'Solyc02g091960.4' => 'sly', 'Solyc03g045050.4' => 'sly', 'Sopen02g034490' => 'spe', 'Sopen02g036530' => 'spe', 'Sopen03g009490' => 'spe', 'Sp1g11740' => 'spa', 'Sp2g28870' => 'spa', 'Sp5g22170' => 'spa', 'TAR371G0717' => 'tar', 'TAR381G1251' => 'tar', 'TAR622G0233' => 'tar', 'TAR622G0904' => 'tar', 'TAR622G0959' => 'tar', 'TAR625G0235' => 'tar', 'TAR629G0360' => 'tar', 'TAR629G1671' => 'tar', 'TAR629G1866' => 'tar', 'THA.LOC104805555' => 'tha', 'THA.LOC104815216' => 'tha', 'THA.LOC104822178' => 'tha', 'THA.LOC104822710' => 'tha', 'THA.LOC104825719' => 'tha', 'THA.LOC104826508' => 'tha', 'Thecc.01G078400' => 'tca', 'Thecc.02G363000' => 'tca', 'Thecc.04G140200' => 'tca', 'Thhalv10003578m.g' => 'esa', 'Thhalv10006601m.g' => 'esa', 'Thhalv10018034m.g' => 'esa', 'Thhalv10019562m.g' => 'esa', 'TPR.G10013' => 'tpr', 'TPR.G3699' => 'tpr', 'TPR.G4495' => 'tpr', 'TWI31G0763' => 'twi', 'TWI31G1272' => 'twi', 'TWI53G1363' => 'twi', 'TWI63G0078' => 'twi', 'TWI74G0426' => 'twi', 'TWI77G0068' => 'twi', 'TWI79G1631' => 'twi', 'unitig_0.g494' => 'ugi', 'unitig_22.g6546' => 'ugi', 'unitig_8.g3263' => 'ugi', 'unitig_8.g3264' => 'ugi', 'unitig_899.g15128' => 'ugi', 'vmacro01359' => 'vma', 'vmacro05373' => 'vma', 'vmacro05374' => 'vma', 'vmacro18103' => 'vma', 'VMungo0251G3305' => 'vmu', 'VMungo1215G1277' => 'vmu', 'VMungo1383G0213' => 'vmu', 'Zm00001eb152080' => 'zma', 'Zm00001eb188670' => 'zma', 'Zm00001eb252350' => 'zma', 'Zm00001eb288610' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001377', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001377' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001377', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '454', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001377' ) ), 'genes' => array( 'A01p04840' => 'bna', 'A02p14090' => 'bna', 'A02p15350' => 'bna', 'A06p08530' => 'bna', 'A07p33840' => 'bna', 'A07p35170' => 'bna', 'A09p09150' => 'bna', 'Aa31LG1G1390' => 'aar', 'Aa31LG1G16300' => 'aar', 'Aa31LG2G3600' => 'aar', 'Aa31LG2G3610' => 'aar', 'Aa31sc79G80' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5167' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.551' => 'aag', 'Actinidia11953' => 'ach', 'Actinidia13686' => 'ach', 'Actinidia13687' => 'ach', 'Actinidia13688' => 'ach', 'Actinidia14837' => 'ach', 'Actinidia14838' => 'ach', 'Actinidia14839' => 'ach', 'Actinidia16605' => 'ach', 'Actinidia17619' => 'ach', 'Actinidia26291' => 'ach', 'Actinidia26292' => 'ach', 'Actinidia36410' => 'ach', 'Actinidia36411' => 'ach', 'Actinidia38404' => 'ach', 'Ah.03g138000' => 'amhyb', 'Ah.10g037470' => 'amhyb', 'Ah.16g102090' => 'amhyb', 'AL1G24910' => 'aly', 'AL2G25750' => 'aly', 'AL2G27740' => 'aly', 'AL6G50880' => 'aly', 'AL8G43490' => 'aly', 'Aqoxy3G00643' => 'aox', 'Aqoxy3G02689_Aqoxy3G02690' => 'aox', 'Aqoxy3G03368' => 'aox', 'Aqoxy5G00825' => 'aox', 'arahy.Tifrunner.gnm1.ann1.15YI41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CMW6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4FD4U0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90HUEH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98QD99' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AYA763' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CP8NJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGXB7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0PK62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EA1KYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYT0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JLH8ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN41X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PL6B48' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q3TKD3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SERK2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8DCP7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XPT71U' => 'arhy', 'AT1G13220' => 'ath', 'AT1G67230' => 'ath', 'AT1G68790' => 'ath', 'AT5G65770' => 'ath', 'AT5G65780' => 'ath', 'ATR0598G143' => 'atr', 'ATR0807G122' => 'atr', 'Atru.chr11.1383' => 'acertr', 'Atru.chr11.1384' => 'acertr', 'Atru.chr3.1079' => 'acertr', 'Atru.chr6.468' => 'acertr', 'Atru.chr6.469' => 'acertr', 'Atru.chr8.798' => 'acertr', 'AUR62002935' => 'cqu', 'AUR62003155' => 'cqu', 'AUR62007744' => 'cqu', 'AUR62007977' => 'cqu', 'AUR62008955' => 'cqu', 'BcaB03g15212' => 'bca', 'BcaB04g20027' => 'bca', 'BcaB05g24249' => 'bca', 'BcaB05g24250' => 'bca', 'BcaB05g24411' => 'bca', 'BcaC01g02835' => 'bca', 'BcaC03g14819' => 'bca', 'BcaC03g14987' => 'bca', 'BcaC04g23249' => 'bca', 'BcaC06g31708' => 'bca', 'BcaC08g46149' => 'bca', 'BolC2t08423H' => 'bol', 'BolC2t08598H' => 'bol', 'BolC3t18254H' => 'bol', 'BolC5t29759H' => 'bol', 'BolC6t39131H' => 'bol', 'BolC9t53964H' => 'bol', 'BraA02t06472Z' => 'bra', 'BraA02t06595Z' => 'bra', 'BraA06t24048Z' => 'bra', 'BraA07t31010Z' => 'bra', 'BraA09t36567Z' => 'bra', 'C02p22700' => 'bna', 'C02p25200' => 'bna', 'C02p41450' => 'bna', 'C03p59890' => 'bna', 'C05p10130' => 'bna', 'C05p31320' => 'bna', 'C06p43050' => 'bna', 'C09p10670' => 'bna', 'CAN.G1343.20' => 'can', 'CAN.G153.19' => 'can', 'CAN.G497.7' => 'can', 'CANSAT01G3006' => 'cansat', 'CANSAT11G1821' => 'cansat', 'CANSAT64G1104' => 'cansat', 'CARHR013600' => 'chi', 'CARHR059690' => 'chi', 'CARHR061610' => 'chi', 'CARHR279770' => 'chi', 'Carub.0001s1295' => 'cru', 'Carub.0002s1351' => 'cru', 'Carub.0002s1535' => 'cru', 'Carub.0008s2667' => 'cru', 'Ca_04307_v3' => 'car', 'Ca_22089_v3' => 'car', 'Ca_26149_v3' => 'car', 'Ca_26150_v3' => 'car', 'CBR_g27897' => 'cbr', 'Cc07_g05040' => 'ccan', 'Cc07_g07520' => 'ccan', 'Cc11_g10760' => 'ccan', 'CDE04G2677' => 'cde', 'CDE06G1107' => 'cde', 'CDE06G2305' => 'cde', 'CDE06G2647' => 'cde', 'CDE07G1053' => 'cde', 'CDE07G1824' => 'cde', 'CDE10G1132' => 'cde', 'CDE10G1177' => 'cde', 'Cfa007959' => 'cfa', 'Cfa009251' => 'cfa', 'Cfa018650' => 'cfa', 'Ciclev10013467m.g' => 'ccl', 'Ciclev10024751m.g' => 'ccl', 'Ciclev10030538m.g' => 'ccl', 'CiPaw.03G005400' => 'cil', 'CiPaw.04G003600' => 'cil', 'CiPaw.07G038400' => 'cil', 'CiPaw.08G149100' => 'cil', 'CiPaw.15G002200' => 'cil', 'ClCG01G005770' => 'cla', 'ClCG01G017910' => 'cla', 'ClCG11G005290' => 'cla', 'COL.COLO4_09721' => 'col', 'COL.COLO4_09722' => 'col', 'COL.COLO4_16205' => 'col', 'Cpa.g.c42160' => 'cpa', 'Cpa.g.sc1.235' => 'cpa', 'Cpa.g.sc129.57' => 'cpa', 'Cpa.g.sc179.33' => 'cpa', 'Cpa.g.sc4.201' => 'cpa', 'CsaV3_5G028920' => 'csa', 'CsaV3_5G039060' => 'csa', 'CsaV3_6G044430' => 'csa', 'CSS0006423' => 'camsi', 'CSS0008216' => 'camsi', 'CSS0008376' => 'camsi', 'CSS0016620' => 'camsi', 'CSS0018350' => 'camsi', 'CSS0019307' => 'camsi', 'CSS0028126' => 'camsi', 'CSS0029331' => 'camsi', 'CSS0046282' => 'camsi', 'DCAR_007220' => 'dca', 'DCAR_007520' => 'dca', 'DCAR_010974' => 'dca', 'DCAR_021833' => 'dca', 'DCAR_025832' => 'dca', 'DCAR_030093' => 'dca', 'Dinv05807' => 'din', 'Dinv16523' => 'din', 'Dinv23061' => 'din', 'Dinv26969' => 'din', 'Dinv26970' => 'din', 'Dinv34858' => 'din', 'Dinv34859' => 'din', 'Duzib138G0922' => 'dzi', 'Duzib147G1298' => 'dzi', 'Duzib251G0529' => 'dzi', 'Duzib264G0128' => 'dzi', 'ECA232G1830' => 'eca', 'ECA234G0497' => 'eca', 'ECA238G3630' => 'eca', 'EL10Ac2g04618' => 'bvu', 'EL10Ac6g14522' => 'bvu', 'EL10Ac6g14944' => 'bvu', 'Eucgr.A00773' => 'egr', 'Eucgr.G02361' => 'egr', 'Eucgr.I00661' => 'egr', 'Eucgr.J01462' => 'egr', 'FAN02G0241' => 'fan', 'FAN05G5792' => 'fan', 'FAN07G2260' => 'fan', 'FAN09G4253' => 'fan', 'FAN12G3823' => 'fan', 'FAN14G3399' => 'fan', 'FAN17G1780' => 'fan', 'FAN19G2689' => 'fan', 'FAN22G2204' => 'fan', 'FAN23G0417' => 'fan', 'FAN26G2388' => 'fan', 'FAN28G2309' => 'fan', 'FvH4_1g18512' => 'fve', 'FvH4_4g28241' => 'fve', 'FvH4_6g45461' => 'fve', 'Glyma.01G090002' => 'gma', 'Glyma.01G090102' => 'gma', 'Glyma.01G196400' => 'gma', 'Glyma.02G101800' => 'gma', 'Glyma.05G109300' => 'gma', 'Glyma.08G256300' => 'gma', 'Glyma.11G045200' => 'gma', 'Glyma.17G157900' => 'gma', 'Glyma.18G280500' => 'gma', 'Gohir.A02G148800' => 'ghi', 'Gohir.A05G393701' => 'ghi', 'Gohir.A07G164400' => 'ghi', 'Gohir.A07G164500' => 'ghi', 'Gohir.A11G161100' => 'ghi', 'Gohir.A11G211100' => 'ghi', 'Gohir.A12G172400' => 'ghi', 'Gohir.A13G086580' => 'ghi', 'Gohir.D03G031500' => 'ghi', 'Gohir.D03G055400' => 'ghi', 'Gohir.D07G179800' => 'ghi', 'Gohir.D11G167400' => 'ghi', 'Gohir.D11G212000' => 'ghi', 'Gohir.D12G174900' => 'ghi', 'Gorai.001G200600' => 'gra', 'Gorai.003G033100' => 'gra', 'Gorai.007G178500' => 'gra', 'Gorai.007G227800' => 'gra', 'Gorai.008G187500' => 'gra', 'GSVIVG01007428001' => 'vvi', 'GSVIVG01011972001' => 'vvi', 'GSVIVG01031076001' => 'vvi', 'HanXRQChr07g0200201' => 'han', 'HanXRQChr09g0261551' => 'han', 'HanXRQChr14g0452321' => 'han', 'HanXRQChr14g0452361' => 'han', 'HanXRQChr16g0528821' => 'han', 'HanXRQChr17g0567751' => 'han', 'Haze_03970' => 'cav', 'Haze_14110' => 'cav', 'Haze_14112' => 'cav', 'Haze_17417' => 'cav', 'Hma1.2p1_0136F.1_g062050' => 'hma', 'Hma1.2p1_0477F.1_g161000' => 'hma', 'Hma1.2p1_0477F.1_g161010' => 'hma', 'Hma1.2p1_0477F.1_g161020' => 'hma', 'Hma1.2p1_0605F.1_g187860' => 'hma', 'HPP92_017692' => 'vpl', 'HPP92_021838' => 'vpl', 'HPP92_021839' => 'vpl', 'HPP92_024702' => 'vpl', 'Hund05774' => 'sun', 'Hund13740' => 'sun', 'Hund16591' => 'sun', 'Hund25112' => 'sun', 'Lalb_Chr04g0255011' => 'lal', 'Lalb_Chr09g0335511' => 'lal', 'Lalb_Chr16g0379031' => 'lal', 'Lalb_Chr17g0336541' => 'lal', 'Lj1g0026501' => 'lja', 'Lj2g0006914' => 'lja', 'Lj4A168T50' => 'lonja', 'Lj4g0025248' => 'lja', 'Lj6C767T7' => 'lonja', 'Lj6C767T8' => 'lonja', 'Lj7A9G80' => 'lonja', 'Lsat_1_v5_gn_2_86661' => 'lsa', 'Lsat_1_v5_gn_4_159441' => 'lsa', 'Lsat_1_v5_gn_4_19300' => 'lsa', 'Manes.01G107600' => 'mes', 'Manes.06G074000' => 'mes', 'Manes.12G118800' => 'mes', 'Manes.13G107600' => 'mes', 'Mapoly0160s0011' => 'mpo', 'MBI16_g11022_MAGBIO' => 'mbi', 'MBI16_g11023_MAGBIO' => 'mbi', 'MD02G1191400' => 'mdo', 'MD09G1082900' => 'mdo', 'MD13G1048500' => 'mdo', 'MD15G1302600' => 'mdo', 'MD16G1049800' => 'mdo', 'Medtr4g097580' => 'mtr', 'Medtr5g052150' => 'mtr', 'Medtr5g052200' => 'mtr', 'Medtr6g015270' => 'mtr', 'Medtr6g015285' => 'mtr', 'Medtr7g018610' => 'mtr', 'Medtr7g116170' => 'mtr', 'MELO3C005352.2' => 'cme', 'MELO3C007665.2' => 'cme', 'MELO3C022065.2' => 'cme', 'Migut.H00316' => 'egut', 'Migut.H00533' => 'egut', 'Migut.L01107' => 'egut', 'MSTRG.23648' => 'ama', 'MSTRG.23825' => 'ama', 'MSTRG.2942' => 'ama', 'MSTRG.810' => 'ama', 'Nitab4.5_0000597g0010' => 'nta', 'Nitab4.5_0002390g0010' => 'nta', 'Nitab4.5_0003461g0040' => 'nta', 'Nitab4.5_0003478g0030' => 'nta', 'Nitab4.5_0003990g0020' => 'nta', 'Nitab4.5_0004420g0060' => 'nta', 'Nitab4.5_0004487g0020' => 'nta', 'Nitab4.5_0009272g0010' => 'nta', 'Nn3g17678' => 'nnu', 'Nn4g23682' => 'nnu', 'Nn6g34551' => 'nnu', 'Oeu007110.3' => 'oeu', 'Oeu041875.1' => 'oeu', 'Oeu061811.2' => 'oeu', 'Os01g0767000' => 'osa', 'Os02g0709900' => 'osa', 'Os02g0710102' => 'osa', 'Peaxi162Scf00004g10118' => 'pax', 'Peaxi162Scf00096g01717' => 'pax', 'Peaxi162Scf00479g00119' => 'pax', 'Peaxi162Scf01056g00241' => 'pax', 'PGR004G0636' => 'pgr', 'PGR042G1271' => 'pgr', 'PGR119G1444' => 'pgr', 'PGSC0003DMG400003363' => 'stu', 'PGSC0003DMG400021400' => 'stu', 'PGSC0003DMG402010047' => 'stu', 'Phvul.003G025500' => 'pvu', 'Phvul.003G232200' => 'pvu', 'Phvul.008G020600' => 'pvu', 'Potri.008G114800' => 'ptr', 'Potri.012G034300' => 'ptr', 'Potri.015G024900' => 'ptr', 'Potri.017G111400' => 'ptr', 'Pp3c1_1360' => 'ppa', 'Pp3c2_34830' => 'ppa', 'Prupe.1G303700' => 'ppe', 'Prupe.3G240800' => 'ppe', 'Prupe.6G214100' => 'ppe', 'Psat1g067200' => 'psa', 'Psat3g191560' => 'psa', 'Psat4g080640' => 'psa', 'PSO017G3294' => 'pso', 'PSO017G3961' => 'pso', 'PSO017G4742' => 'pso', 'PSO063G3921' => 'pso', 'PSO170G4358' => 'pso', 'PSO478G2613' => 'pso', 'PSO832G1490' => 'pso', 'QL01p000940' => 'qlo', 'QL01p000944' => 'qlo', 'QL01p000954' => 'qlo', 'QL02p053039' => 'qlo', 'QL06p038381' => 'qlo', 'RcHm_v2.0_Chr2g0109151' => 'rch', 'RcHm_v2.0_Chr2g0163401' => 'rch', 'RcHm_v2.0_Chr4g0436081' => 'rch', 'RcHm_v2.0_Chr4g0436091' => 'rch', 'RcHm_v2.0_Chr4g0436101' => 'rch', 'RcHm_v2.0_Chr7g0226101' => 'rch', 'Rhsim06G0209200' => 'rsi', 'Rhsim08G0079900' => 'rsi', 'Rhsim10G0092900' => 'rsi', 'Rhsim12G0080700' => 'rsi', 'Sabra08G0087000' => 'sbr', 'Sabra12G0023500' => 'sbr', 'SalBow1G0002' => 'sbo', 'SalBow1G5670' => 'sbo', 'SalBow1G6161' => 'sbo', 'SalBow3G2766' => 'sbo', 'SalBow8G4999' => 'sbo', 'Sc11g0002990' => 'sci', 'Sc11g0008120' => 'sci', 'Sc16g0000890' => 'sci', 'Sed0000445' => 'sed', 'Sed0011516' => 'sed', 'Sed0013236' => 'sed', 'Sed0017705' => 'sed', 'Sed0021007' => 'sed', 'Sed0026492' => 'sed', 'SEGI_02593' => 'sgi', 'SEGI_18919' => 'sgi', 'SEGI_31543' => 'sgi', 'SGA_v2.0_scaffold121G33074' => 'sas', 'SGA_v2.0_scaffold204G41653' => 'sas', 'SGA_v2.0_scaffold335G49141' => 'sas', 'SGA_v2.0_scaffold36G14511' => 'sas', 'SMO223G0040' => 'smo', 'Solyc02g089800.3' => 'sly', 'Solyc02g091960.4' => 'sly', 'Solyc03g045050.4' => 'sly', 'Sopen02g034490' => 'spe', 'Sopen02g036530' => 'spe', 'Sopen03g009490' => 'spe', 'Sp1g11740' => 'spa', 'Sp2g28870' => 'spa', 'Sp5g22170' => 'spa', 'TAR371G0717' => 'tar', 'TAR381G1251' => 'tar', 'TAR622G0233' => 'tar', 'TAR622G0904' => 'tar', 'TAR622G0959' => 'tar', 'TAR625G0235' => 'tar', 'TAR629G0360' => 'tar', 'TAR629G1671' => 'tar', 'TAR629G1866' => 'tar', 'THA.LOC104805555' => 'tha', 'THA.LOC104815216' => 'tha', 'THA.LOC104822178' => 'tha', 'THA.LOC104822710' => 'tha', 'THA.LOC104825719' => 'tha', 'THA.LOC104826508' => 'tha', 'Thecc.01G078400' => 'tca', 'Thecc.02G363000' => 'tca', 'Thecc.04G140200' => 'tca', 'Thhalv10003578m.g' => 'esa', 'Thhalv10006601m.g' => 'esa', 'Thhalv10018034m.g' => 'esa', 'Thhalv10019562m.g' => 'esa', 'TPR.G10013' => 'tpr', 'TPR.G3699' => 'tpr', 'TPR.G4495' => 'tpr', 'TWI31G0763' => 'twi', 'TWI31G1272' => 'twi', 'TWI53G1363' => 'twi', 'TWI63G0078' => 'twi', 'TWI74G0426' => 'twi', 'TWI77G0068' => 'twi', 'TWI79G1631' => 'twi', 'unitig_0.g494' => 'ugi', 'unitig_22.g6546' => 'ugi', 'unitig_8.g3263' => 'ugi', 'unitig_8.g3264' => 'ugi', 'unitig_899.g15128' => 'ugi', 'vmacro01359' => 'vma', 'vmacro05373' => 'vma', 'vmacro05374' => 'vma', 'vmacro18103' => 'vma', 'VMungo0251G3305' => 'vmu', 'VMungo1215G1277' => 'vmu', 'VMungo1383G0213' => 'vmu', 'Zm00001eb152080' => 'zma', 'Zm00001eb188670' => 'zma', 'Zm00001eb252350' => 'zma', 'Zm00001eb288610' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001377' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001377' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001377' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001377' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151