Gene: Sopen03g009490

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g009490
  • Transcript Identifier Sopen03g009490.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 10724381-10733588 : positive

Gene Family Information

  • ID HOM05D001377
  • #Genes/#Species 454/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g009490.1

Descriptions

  • Description Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure. | LITTLE NUCLEI1 (LINC1) | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: nucleus organization | LOCATED IN: cytosol, nucleus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 13 growth stages | BEST Arabidopsis thaliana protein match is: nuclear matrix constituent protein-related
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006997
IEA
InterPronucleus organization
GO:0006974
ISO
PLAZA Integrative Orthologycellular response to DNA damage stimulus AT1G13220
GO:0097298
ISO
PLAZA Integrative Orthologyregulation of nucleus size AT1G67230

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G67230

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G68790
GO:0005652
ISO
PLAZA Integrative Orthologynuclear lamina DCAR_010974
GO:0000785
ISO
PLAZA Integrative Orthologychromatin AT1G67230
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT1G67230
GO:0005635
ISO
PLAZA Integrative Orthologynuclear envelope AT1G67230
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT1G68790
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT1G68790
GO:0016363
ISO
PLAZA Integrative Orthologynuclear matrix DCAR_010974
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G67230
GO:0034399
ISO
PLAZA Integrative Orthologynuclear periphery AT1G67230

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR040418 Protein crowded nuclei
Mapman id Description
20.4.3.1 Cytoskeleton organisation.nuclear dynamics.nuclear shape determination.lamin-like protein (CRWN)