Functional clusters

Information

  • Type Gene Ontology
  • Description transcription regulator activity

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Rosa chinensis RcHm_v2.0_Chr2 3 CH_rch_616 14 78 0.000163348
Rosa chinensis RcHm_v2.0_Chr2 3 CH_rch_777 13 75 0.00092186
Rhododendron simsii chr02 3 CH_rsi_150 10 14 0.00000000524754
Solanum tuberosum ST4.03ch10 3 CH_stu_275 7 7 0.00000302907
Rosa chinensis RcHm_v2.0_Chr2 4 CH_rch_616 14 78 0.000163348
Rosa chinensis RcHm_v2.0_Chr2 4 CH_rch_777 13 75 0.00092186
Rhododendron simsii chr02 4 CH_rsi_150 10 14 0.00000000524754
Solanum tuberosum ST4.03ch10 4 CH_stu_275 7 7 0.00000302907

Available child term results

Ontology identifier Description Number of clusters
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific 76
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific 2
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific 4
GO:0003700 DNA-binding transcription factor activity 132
GO:0003712 transcription coregulator activity 10
GO:0003713 transcription coactivator activity 24
GO:0003714 transcription corepressor activity 116

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001