Functional clusters
Information
- Type Gene Ontology
- Description DNA-binding transcription factor activity, RNA polymerase II-specific
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-5 | 3 | CH_aar_230 | 3 | 4 | 0.000531671 |
| Aethionema arabicum | LG-11 | 3 | CH_aar_69 | 5 | 9 | 0.0000000487982 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 3 | CH_arhy_451 | 3 | 3 | 0.0000333484 |
| Brassica carinata | ChrC06 | 3 | CH_bca_412 | 5 | 20 | 0.00000796671 |
| Brassica napus | A02 | 3 | CH_bna_383 | 5 | 24 | 0.0000226588 |
| Brassica napus | A01 | 3 | CH_bna_539 | 3 | 3 | 0.000290691 |
| Cannabis sativa | NC_044370.1 | 3 | CH_cansat_155 | 4 | 8 | 0.0000066283 |
| Cannabis sativa | NC_044372.1 | 3 | CH_cansat_359 | 4 | 23 | 0.000825608 |
| Cicer arietinum L. | Ca_LG5_v3 | 3 | CH_car_16 | 5 | 7 | 0.00000000379475 |
| Carya illinoinensis | Chr14 | 3 | CH_cil_190 | 4 | 4 | 0.0000000881711 |
| Carica papaya | supercontig_117 | 3 | CH_cpa_107 | 4 | 7 | 0.00000663322 |
| Carica papaya | supercontig_30 | 3 | CH_cpa_250 | 3 | 4 | 0.000456874 |
| Carica papaya | supercontig_173 | 3 | CH_cpa_75 | 5 | 13 | 0.000000391569 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2187 | 3 | CH_cqu_411 | 4 | 11 | 0.00024283 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4480 | 3 | CH_cqu_55 | 7 | 9 | 0.000000000000203037 |
| Capsella rubella | scaffold_4 | 3 | CH_cru_309 | 3 | 3 | 0.000438965 |
| Capsella rubella | scaffold_6 | 3 | CH_cru_73 | 5 | 5 | 0.0000000025947 |
| Eucalyptus grandis | Chr08 | 3 | CH_egr_785 | 3 | 4 | 0.000235744 |
| Eutrema salsugineum | scaffold_9 | 3 | CH_esa_50 | 5 | 5 | 0.00000000305303 |
| Gossypium hirsutum | D13 | 3 | CH_ghi_257 | 4 | 4 | 0.000000342061 |
| Gossypium hirsutum | A09 | 3 | CH_ghi_678 | 3 | 4 | 0.000947863 |
| Gossypium raimondii | Chr13 | 3 | CH_gra_156 | 4 | 5 | 0.00000187976 |
| Gossypium raimondii | Chr12 | 3 | CH_gra_279 | 3 | 3 | 0.000216064 |
| Helianthus annuus | HanXRQChr15 | 3 | CH_han_151 | 5 | 6 | 0.000000000317118 |
| Lotus japonicus | chr4 | 3 | CH_lja_2 | 12 | 12 | 2.00931e-29 |
| Magnolia biondii | Chr10 | 3 | CH_mbi_306 | 5 | 33 | 0.00000366628 |
| Magnolia biondii | Chr16 | 3 | CH_mbi_387 | 4 | 16 | 0.0000365602 |
| Malus domestica | Chr12 | 3 | CH_mdo_438 | 3 | 3 | 0.0000665583 |
| Olea europaea | chr15 | 3 | CH_oeu_86 | 6 | 42 | 0.00000078331 |
| Petunia axillaris | Peaxi162Scf00222 | 3 | CH_pax_281 | 3 | 5 | 0.000404446 |
| Prunus persica | Pp07 | 3 | CH_ppe_339 | 3 | 3 | 0.0000889813 |
| Prunus persica | Pp01 | 3 | CH_ppe_409 | 3 | 4 | 0.000355533 |
| Pisum sativum | chr5LG3 | 3 | CH_psa_41 | 6 | 9 | 0.00000000001018 |
| Phaseolus vulgaris | Chr06 | 3 | CH_pvu_88 | 5 | 7 | 0.00000000497328 |
| Schrenkiella parvula | ch3-1 | 3 | CH_spa_148 | 3 | 3 | 0.00023065 |
| Theobroma cacao | Chromosome_5 | 3 | CH_tca_343 | 3 | 4 | 0.000317648 |
| Tripterygium wilfordii | NC_052246.1 | 3 | CH_twi_30 | 6 | 6 | 0.000000000000492265 |
| Vigna mungo | CM024075.1 | 3 | CH_vmu_21 | 6 | 8 | 0.00000000000231133 |
| Aethionema arabicum | LG-5 | 4 | CH_aar_230 | 3 | 4 | 0.000531671 |
| Aethionema arabicum | LG-11 | 4 | CH_aar_69 | 5 | 9 | 0.0000000487982 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 4 | CH_arhy_451 | 3 | 3 | 0.0000333484 |
| Brassica carinata | ChrC06 | 4 | CH_bca_412 | 5 | 20 | 0.00000796671 |
| Brassica napus | A02 | 4 | CH_bna_383 | 5 | 24 | 0.0000226588 |
| Brassica napus | A01 | 4 | CH_bna_539 | 3 | 3 | 0.000290691 |
| Cannabis sativa | NC_044370.1 | 4 | CH_cansat_155 | 4 | 8 | 0.0000066283 |
| Cannabis sativa | NC_044372.1 | 4 | CH_cansat_359 | 4 | 23 | 0.000825608 |
| Cicer arietinum L. | Ca_LG5_v3 | 4 | CH_car_16 | 5 | 7 | 0.00000000379475 |
| Carya illinoinensis | Chr14 | 4 | CH_cil_190 | 4 | 4 | 0.0000000881711 |
| Carica papaya | supercontig_117 | 4 | CH_cpa_107 | 4 | 7 | 0.00000663322 |
| Carica papaya | supercontig_30 | 4 | CH_cpa_250 | 3 | 4 | 0.000456874 |
| Carica papaya | supercontig_173 | 4 | CH_cpa_75 | 5 | 13 | 0.000000391569 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2187 | 4 | CH_cqu_411 | 4 | 11 | 0.00024283 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4480 | 4 | CH_cqu_55 | 7 | 9 | 0.000000000000203037 |
| Capsella rubella | scaffold_4 | 4 | CH_cru_309 | 3 | 3 | 0.000438965 |
| Capsella rubella | scaffold_6 | 4 | CH_cru_73 | 5 | 5 | 0.0000000025947 |
| Eucalyptus grandis | Chr08 | 4 | CH_egr_785 | 3 | 4 | 0.000235744 |
| Eutrema salsugineum | scaffold_9 | 4 | CH_esa_50 | 5 | 5 | 0.00000000305303 |
| Gossypium hirsutum | D13 | 4 | CH_ghi_257 | 4 | 4 | 0.000000342061 |
| Gossypium hirsutum | A09 | 4 | CH_ghi_678 | 3 | 4 | 0.000947863 |
| Gossypium raimondii | Chr13 | 4 | CH_gra_156 | 4 | 5 | 0.00000187976 |
| Gossypium raimondii | Chr12 | 4 | CH_gra_279 | 3 | 3 | 0.000216064 |
| Helianthus annuus | HanXRQChr15 | 4 | CH_han_151 | 5 | 6 | 0.000000000317118 |
| Lotus japonicus | chr4 | 4 | CH_lja_2 | 12 | 12 | 2.00931e-29 |
| Magnolia biondii | Chr10 | 4 | CH_mbi_306 | 5 | 33 | 0.00000366628 |
| Magnolia biondii | Chr16 | 4 | CH_mbi_387 | 4 | 16 | 0.0000365602 |
| Malus domestica | Chr12 | 4 | CH_mdo_438 | 3 | 3 | 0.0000665583 |
| Olea europaea | chr15 | 4 | CH_oeu_86 | 6 | 42 | 0.00000078331 |
| Petunia axillaris | Peaxi162Scf00222 | 4 | CH_pax_281 | 3 | 5 | 0.000404446 |
| Prunus persica | Pp07 | 4 | CH_ppe_339 | 3 | 3 | 0.0000889813 |
| Prunus persica | Pp01 | 4 | CH_ppe_409 | 3 | 4 | 0.000355533 |
| Pisum sativum | chr5LG3 | 4 | CH_psa_41 | 6 | 9 | 0.00000000001018 |
| Phaseolus vulgaris | Chr06 | 4 | CH_pvu_88 | 5 | 7 | 0.00000000497328 |
| Schrenkiella parvula | ch3-1 | 4 | CH_spa_148 | 3 | 3 | 0.00023065 |
| Theobroma cacao | Chromosome_5 | 4 | CH_tca_343 | 3 | 4 | 0.000317648 |
| Tripterygium wilfordii | NC_052246.1 | 4 | CH_twi_30 | 6 | 6 | 0.000000000000492265 |
| Vigna mungo | CM024075.1 | 4 | CH_vmu_21 | 6 | 8 | 0.00000000000231133 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0001227 | DNA-binding transcription repressor activity, RNA polymerase II-specific | 2 |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | 4 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |