Functional clusters
Information
- Type Gene Ontology
- Description DNA-binding transcription factor activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group9 | 3 | CH_ach_35 | 11 | 19 | 0.0000000198131 |
| Brassica carinata | ChrC06 | 3 | CH_bca_851 | 15 | 79 | 0.000511776 |
| Brassica napus | C03 | 3 | CH_bna_540 | 7 | 11 | 0.000293354 |
| Brassica napus | A08 | 3 | CH_bna_93 | 11 | 14 | 0.000000000160394 |
| Camellia sinensis var. sinensis | Chr14 | 3 | CH_camsi_736 | 8 | 22 | 0.000421827 |
| Capsicum annuum | PGAv.1.6.scaffold532 | 3 | CH_can_243 | 7 | 9 | 0.0000100084 |
| Capsicum annuum | PGAv.1.6.scaffold566 | 3 | CH_can_401 | 5 | 5 | 0.000387263 |
| Capsicum annuum | PGAv.1.6.scaffold792 | 3 | CH_can_402 | 5 | 5 | 0.000387263 |
| Capsicum annuum | PGAv.1.6.scaffold379 | 3 | CH_can_47 | 15 | 19 | 3.10405e-16 |
| Capsicum annuum | PGAv.1.6.scaffold189 | 3 | CH_can_65 | 12 | 14 | 0.000000000000383566 |
| Capsicum annuum | PGAv.1.6.scaffold529 | 3 | CH_can_94 | 9 | 9 | 0.000000000218667 |
| Corylus avellana | 9 | 3 | CH_cav_234 | 8 | 16 | 0.0000545144 |
| Coffea canephora | chr6 | 3 | CH_ccan_279 | 6 | 62 | 0.000157098 |
| Ceratophyllum demersum | 7 | 3 | CH_cde_120 | 7 | 10 | 0.000129246 |
| Carpinus fangiana | Cfa05 | 3 | CH_cfa_278 | 5 | 5 | 0.000227814 |
| Daucus carota | DCARv2_Chr9 | 3 | CH_dca_20 | 17 | 24 | 4.62735e-16 |
| Daucus carota | DCARv2_Chr1 | 3 | CH_dca_30 | 14 | 17 | 0.0000000000000303391 |
| Davidia involucrata | GWHABJS00000018 | 3 | CH_din_123 | 9 | 14 | 0.000000208624 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 3 | CH_eca_371 | 7 | 16 | 0.000301706 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 3 | CH_eca_92 | 9 | 14 | 0.0000000185826 |
| Helianthus annuus | HanXRQChr17 | 3 | CH_han_149 | 17 | 50 | 0.000000000180959 |
| Helianthus annuus | HanXRQChr06 | 3 | CH_han_261 | 9 | 13 | 0.000000155142 |
| Helianthus annuus | HanXRQChr05 | 3 | CH_han_285 | 7 | 7 | 0.000000367264 |
| Helianthus annuus | HanXRQChr08 | 3 | CH_han_630 | 6 | 8 | 0.000386022 |
| Helianthus annuus | HanXRQChr07 | 3 | CH_han_672 | 5 | 5 | 0.000564944 |
| Lotus japonicus | chr1 | 3 | CH_lja_363 | 5 | 5 | 0.000738121 |
| Lonicera japonica | GWHAAZE00000001 | 3 | CH_lonja_183 | 8 | 8 | 0.0000000027962 |
| Lonicera japonica | GWHAAZE00000003 | 3 | CH_lonja_186 | 9 | 11 | 0.00000000340094 |
| Lonicera japonica | GWHAAZE00000003 | 3 | CH_lonja_227 | 17 | 80 | 0.000000126905 |
| Lonicera japonica | GWHAAZE00000003 | 3 | CH_lonja_38 | 28 | 62 | 6.5746e-25 |
| Lonicera japonica | GWHAAZE00000004 | 3 | CH_lonja_468 | 5 | 5 | 0.000226259 |
| Lonicera japonica | GWHAAZE00000001 | 3 | CH_lonja_570 | 8 | 22 | 0.00066909 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 3 | CH_lsa_221 | 10 | 21 | 0.000000900268 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 3 | CH_lsa_343 | 6 | 7 | 0.0000610968 |
| Magnolia biondii | Chr04 | 3 | CH_mbi_239 | 12 | 48 | 0.000000480562 |
| Medicago truncatula | chr6 | 3 | CH_mtr_220 | 12 | 29 | 0.0000000056437 |
| Medicago truncatula | chr2 | 3 | CH_mtr_405 | 7 | 10 | 0.0000060723 |
| Olea europaea | chr15 | 3 | CH_oeu_345 | 10 | 32 | 0.000567134 |
| Olea europaea | chr15 | 3 | CH_oeu_87 | 8 | 10 | 0.00000080654 |
| Petunia axillaris | Peaxi162Scf00071 | 3 | CH_pax_35 | 10 | 11 | 0.0000000000588937 |
| Prunus persica | Pp05 | 3 | CH_ppe_88 | 10 | 10 | 0.00000000000195672 |
| Pisum sativum | chr4LG4 | 3 | CH_psa_100 | 11 | 27 | 0.00000010223 |
| Pisum sativum | chr1LG6 | 3 | CH_psa_396 | 7 | 17 | 0.000981302 |
| Papaver somniferum | NC_039368.1 | 3 | CH_pso_13 | 20 | 28 | 1.81866e-26 |
| Papaver somniferum | NW_020625487.1 | 3 | CH_pso_80 | 12 | 19 | 0.000000000000222336 |
| Quercus lobata | 6 | 3 | CH_qlo_432 | 10 | 20 | 0.000000104758 |
| Quercus lobata | 6 | 3 | CH_qlo_575 | 8 | 14 | 0.00000416836 |
| Quercus lobata | 9 | 3 | CH_qlo_698 | 9 | 25 | 0.000049239 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_245 | 17 | 78 | 0.000000026352 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_307 | 16 | 78 | 0.00000034248 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_413 | 11 | 36 | 0.00000641873 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_535 | 14 | 80 | 0.0000648563 |
| Rhododendron simsii | chr03 | 3 | CH_rsi_311 | 10 | 28 | 0.0000182456 |
| Rhododendron simsii | chr05 | 3 | CH_rsi_519 | 7 | 15 | 0.000810283 |
| Salvia bowleyana | GWHASIU00000008 | 3 | CH_sbo_282 | 8 | 17 | 0.0000144948 |
| Simmondsia chinensis | GWHAASQ00000018 | 3 | CH_sci_51 | 8 | 9 | 0.0000000671292 |
| Sechium edule | LG04 | 3 | CH_sed_119 | 7 | 7 | 0.00000213441 |
| Sequoiadendron giganteum | chr7 | 3 | CH_sgi_1081 | 6 | 9 | 0.00014359 |
| Sequoiadendron giganteum | chr8 | 3 | CH_sgi_1309 | 5 | 6 | 0.000566479 |
| Sequoiadendron giganteum | chr3 | 3 | CH_sgi_364 | 10 | 13 | 0.0000000000589692 |
| Sequoiadendron giganteum | chr9 | 3 | CH_sgi_900 | 7 | 12 | 0.0000244527 |
| Selaginella moellendorffii | scaffold_15 | 3 | CH_smo_24 | 8 | 9 | 0.000000000380988 |
| Solanum tuberosum | ST4.03ch11 | 3 | CH_stu_149 | 12 | 19 | 0.00000000213264 |
| Solanum tuberosum | ST4.03ch10 | 3 | CH_stu_542 | 6 | 7 | 0.000311726 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 3 | CH_tpr_118 | 7 | 8 | 0.00000180073 |
| Zea mays | 1 | 3 | CH_zma_33 | 11 | 11 | 0.0000000000277493 |
| Actinidia chinensis | Lachesis_group9 | 4 | CH_ach_35 | 11 | 19 | 0.0000000198131 |
| Brassica carinata | ChrC06 | 4 | CH_bca_851 | 15 | 79 | 0.000511776 |
| Brassica napus | C03 | 4 | CH_bna_540 | 7 | 11 | 0.000293354 |
| Brassica napus | A08 | 4 | CH_bna_93 | 11 | 14 | 0.000000000160394 |
| Camellia sinensis var. sinensis | Chr14 | 4 | CH_camsi_736 | 8 | 22 | 0.000421827 |
| Capsicum annuum | PGAv.1.6.scaffold532 | 4 | CH_can_243 | 7 | 9 | 0.0000100084 |
| Capsicum annuum | PGAv.1.6.scaffold566 | 4 | CH_can_401 | 5 | 5 | 0.000387263 |
| Capsicum annuum | PGAv.1.6.scaffold792 | 4 | CH_can_402 | 5 | 5 | 0.000387263 |
| Capsicum annuum | PGAv.1.6.scaffold379 | 4 | CH_can_47 | 15 | 19 | 3.10405e-16 |
| Capsicum annuum | PGAv.1.6.scaffold189 | 4 | CH_can_65 | 12 | 14 | 0.000000000000383566 |
| Capsicum annuum | PGAv.1.6.scaffold529 | 4 | CH_can_94 | 9 | 9 | 0.000000000218667 |
| Corylus avellana | 9 | 4 | CH_cav_234 | 8 | 16 | 0.0000545144 |
| Coffea canephora | chr6 | 4 | CH_ccan_279 | 6 | 62 | 0.000157098 |
| Ceratophyllum demersum | 7 | 4 | CH_cde_120 | 7 | 10 | 0.000129246 |
| Carpinus fangiana | Cfa05 | 4 | CH_cfa_278 | 5 | 5 | 0.000227814 |
| Daucus carota | DCARv2_Chr9 | 4 | CH_dca_20 | 17 | 24 | 4.62735e-16 |
| Daucus carota | DCARv2_Chr1 | 4 | CH_dca_30 | 14 | 17 | 0.0000000000000303391 |
| Davidia involucrata | GWHABJS00000018 | 4 | CH_din_123 | 9 | 14 | 0.000000208624 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 4 | CH_eca_371 | 7 | 16 | 0.000301706 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 4 | CH_eca_92 | 9 | 14 | 0.0000000185826 |
| Helianthus annuus | HanXRQChr17 | 4 | CH_han_149 | 17 | 50 | 0.000000000180959 |
| Helianthus annuus | HanXRQChr06 | 4 | CH_han_261 | 9 | 13 | 0.000000155142 |
| Helianthus annuus | HanXRQChr05 | 4 | CH_han_285 | 7 | 7 | 0.000000367264 |
| Helianthus annuus | HanXRQChr08 | 4 | CH_han_630 | 6 | 8 | 0.000386022 |
| Helianthus annuus | HanXRQChr07 | 4 | CH_han_672 | 5 | 5 | 0.000564944 |
| Lotus japonicus | chr1 | 4 | CH_lja_363 | 5 | 5 | 0.000738121 |
| Lonicera japonica | GWHAAZE00000001 | 4 | CH_lonja_183 | 8 | 8 | 0.0000000027962 |
| Lonicera japonica | GWHAAZE00000003 | 4 | CH_lonja_186 | 9 | 11 | 0.00000000340094 |
| Lonicera japonica | GWHAAZE00000003 | 4 | CH_lonja_227 | 17 | 80 | 0.000000126905 |
| Lonicera japonica | GWHAAZE00000003 | 4 | CH_lonja_38 | 28 | 62 | 6.5746e-25 |
| Lonicera japonica | GWHAAZE00000004 | 4 | CH_lonja_468 | 5 | 5 | 0.000226259 |
| Lonicera japonica | GWHAAZE00000001 | 4 | CH_lonja_570 | 8 | 22 | 0.00066909 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 4 | CH_lsa_221 | 10 | 21 | 0.000000900268 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 4 | CH_lsa_343 | 6 | 7 | 0.0000610968 |
| Magnolia biondii | Chr04 | 4 | CH_mbi_239 | 12 | 48 | 0.000000480562 |
| Medicago truncatula | chr6 | 4 | CH_mtr_220 | 12 | 29 | 0.0000000056437 |
| Medicago truncatula | chr2 | 4 | CH_mtr_405 | 7 | 10 | 0.0000060723 |
| Olea europaea | chr15 | 4 | CH_oeu_345 | 10 | 32 | 0.000567134 |
| Olea europaea | chr15 | 4 | CH_oeu_87 | 8 | 10 | 0.00000080654 |
| Petunia axillaris | Peaxi162Scf00071 | 4 | CH_pax_35 | 10 | 11 | 0.0000000000588937 |
| Prunus persica | Pp05 | 4 | CH_ppe_88 | 10 | 10 | 0.00000000000195672 |
| Pisum sativum | chr4LG4 | 4 | CH_psa_100 | 11 | 27 | 0.00000010223 |
| Pisum sativum | chr1LG6 | 4 | CH_psa_396 | 7 | 17 | 0.000981302 |
| Papaver somniferum | NC_039368.1 | 4 | CH_pso_13 | 20 | 28 | 1.81866e-26 |
| Papaver somniferum | NW_020625487.1 | 4 | CH_pso_80 | 12 | 19 | 0.000000000000222336 |
| Quercus lobata | 6 | 4 | CH_qlo_432 | 10 | 20 | 0.000000104758 |
| Quercus lobata | 6 | 4 | CH_qlo_575 | 8 | 14 | 0.00000416836 |
| Quercus lobata | 9 | 4 | CH_qlo_698 | 9 | 25 | 0.000049239 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_245 | 17 | 78 | 0.000000026352 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_307 | 16 | 78 | 0.00000034248 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_413 | 11 | 36 | 0.00000641873 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_535 | 14 | 80 | 0.0000648563 |
| Rhododendron simsii | chr03 | 4 | CH_rsi_311 | 10 | 28 | 0.0000182456 |
| Rhododendron simsii | chr05 | 4 | CH_rsi_519 | 7 | 15 | 0.000810283 |
| Salvia bowleyana | GWHASIU00000008 | 4 | CH_sbo_282 | 8 | 17 | 0.0000144948 |
| Simmondsia chinensis | GWHAASQ00000018 | 4 | CH_sci_51 | 8 | 9 | 0.0000000671292 |
| Sechium edule | LG04 | 4 | CH_sed_119 | 7 | 7 | 0.00000213441 |
| Sequoiadendron giganteum | chr7 | 4 | CH_sgi_1081 | 6 | 9 | 0.00014359 |
| Sequoiadendron giganteum | chr8 | 4 | CH_sgi_1309 | 5 | 6 | 0.000566479 |
| Sequoiadendron giganteum | chr3 | 4 | CH_sgi_364 | 10 | 13 | 0.0000000000589692 |
| Sequoiadendron giganteum | chr9 | 4 | CH_sgi_900 | 7 | 12 | 0.0000244527 |
| Selaginella moellendorffii | scaffold_15 | 4 | CH_smo_24 | 8 | 9 | 0.000000000380988 |
| Solanum tuberosum | ST4.03ch11 | 4 | CH_stu_149 | 12 | 19 | 0.00000000213264 |
| Solanum tuberosum | ST4.03ch10 | 4 | CH_stu_542 | 6 | 7 | 0.000311726 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 4 | CH_tpr_118 | 7 | 8 | 0.00000180073 |
| Zea mays | 1 | 4 | CH_zma_33 | 11 | 11 | 0.0000000000277493 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | 76 |
| GO:0001227 | DNA-binding transcription repressor activity, RNA polymerase II-specific | 2 |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | 4 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |