Functional clusters
Information
- Type Gene Ontology
- Description transcription corepressor activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-4 | 3 | CH_aar_41 | 5 | 5 | 0.0000000000510793 |
| Acer truncatum | chr4 | 3 | CH_acertr_241 | 3 | 3 | 0.00000991516 |
| Arabidopsis lyrata | scaffold_1 | 3 | CH_aly_13 | 10 | 34 | 3.17866e-17 |
| Arabidopsis lyrata | scaffold_6 | 3 | CH_aly_220 | 3 | 3 | 0.0000750228 |
| Aquilegia oxysepala | CHR03 | 3 | CH_aox_18 | 6 | 12 | 0.00000000000266622 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 3 | CH_arhy_238 | 4 | 4 | 0.0000000156647 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 3 | CH_arhy_434 | 3 | 4 | 0.000023254 |
| Arabidopsis thaliana | Chr5 | 3 | CH_ath_222 | 4 | 9 | 0.00000172512 |
| Arabidopsis thaliana | Chr1 | 3 | CH_ath_68 | 6 | 17 | 0.0000000000655771 |
| Arabidopsis thaliana | Chr1 | 3 | CH_ath_90 | 5 | 9 | 0.00000000108788 |
| Brassica carinata | ChrB05 | 3 | CH_bca_36 | 6 | 6 | 0.0000000000000379106 |
| Brassica napus | C02 | 3 | CH_bna_126 | 5 | 8 | 0.00000000304105 |
| Brassica napus | C09 | 3 | CH_bna_263 | 4 | 7 | 0.00000222609 |
| Brassica oleracea | C2 | 3 | CH_bol_140 | 4 | 6 | 0.000000332569 |
| Brassica oleracea | C9 | 3 | CH_bol_55 | 5 | 6 | 0.0000000000978964 |
| Brassica rapa | A02 | 3 | CH_bra_206 | 3 | 4 | 0.000136386 |
| Brassica rapa | A07 | 3 | CH_bra_207 | 3 | 4 | 0.000136386 |
| Capsicum annuum | PGAv.1.6.scaffold206 | 3 | CH_can_56 | 6 | 6 | 0.0000000000000153376 |
| Coffea canephora | chr11 | 3 | CH_ccan_181 | 3 | 20 | 0.0000173627 |
| Cardamine hirsuta | Chr6 | 3 | CH_chi_205 | 3 | 3 | 0.0000391015 |
| Cardamine hirsuta | Chr1 | 3 | CH_chi_37 | 6 | 6 | 0.0000000000000393311 |
| Cardamine hirsuta | Chr2 | 3 | CH_chi_388 | 3 | 6 | 0.000780126 |
| Carica papaya | supercontig_83 | 3 | CH_cpa_189 | 3 | 5 | 0.000131205 |
| Capsella rubella | scaffold_6 | 3 | CH_cru_111 | 4 | 4 | 0.0000000614039 |
| Capsella rubella | scaffold_1 | 3 | CH_cru_32 | 8 | 27 | 0.000000000000180824 |
| Eutrema salsugineum | scaffold_5 | 3 | CH_esa_131 | 3 | 3 | 0.0000176058 |
| Fragaria vesca | Fvb6 | 3 | CH_fve_221 | 3 | 3 | 0.0000211354 |
| Gossypium hirsutum | D09 | 3 | CH_ghi_301 | 4 | 7 | 0.00000229487 |
| Glycine max | Gm08 | 3 | CH_gma_348 | 3 | 4 | 0.000149408 |
| Gossypium raimondii | Chr06 | 3 | CH_gra_67 | 5 | 5 | 0.0000000000407725 |
| Helianthus annuus | HanXRQChr17 | 3 | CH_han_495 | 3 | 4 | 0.0000818393 |
| Lupinus albus | Lalb_Chr02 | 3 | CH_lal_271 | 3 | 3 | 0.000120894 |
| Lupinus albus | Lalb_Chr05 | 3 | CH_lal_272 | 3 | 3 | 0.000120894 |
| Lupinus albus | Lalb_Chr07 | 3 | CH_lal_62 | 5 | 5 | 0.000000000238286 |
| Magnolia biondii | Chr15 | 3 | CH_mbi_244 | 6 | 71 | 0.000000499779 |
| Magnolia biondii | Chr01 | 3 | CH_mbi_425 | 3 | 4 | 0.0000574288 |
| Magnolia biondii | Chr04 | 3 | CH_mbi_426 | 3 | 4 | 0.0000574288 |
| Malus domestica | Chr05 | 3 | CH_mdo_210 | 4 | 5 | 0.000000110977 |
| Medicago truncatula | chr1 | 3 | CH_mtr_128 | 6 | 8 | 0.00000000000882412 |
| Medicago truncatula | chr3 | 3 | CH_mtr_214 | 6 | 17 | 0.00000000386078 |
| Medicago truncatula | chr4 | 3 | CH_mtr_50 | 8 | 10 | 2.33823e-17 |
| Punica granatum | NC_045129.1 | 3 | CH_pgr_241 | 3 | 4 | 0.0000597944 |
| Pisum sativum | chr2LG1 | 3 | CH_psa_42 | 8 | 52 | 0.0000000000148475 |
| Phaseolus vulgaris | Chr03 | 3 | CH_pvu_197 | 3 | 3 | 0.0000163896 |
| Quercus lobata | CM012294 | 3 | CH_qlo_20 | 11 | 13 | 2.23552e-29 |
| Sapria himalayana | scaffold3_21451142 | 3 | CH_shi_108 | 3 | 3 | 0.0000047525 |
| Sapria himalayana | scaffold24_7948270 | 3 | CH_shi_12 | 6 | 10 | 0.0000000000000782784 |
| Sapria himalayana | scaffold33_6547121 | 3 | CH_shi_126 | 3 | 4 | 0.0000190029 |
| Solanum lycopersicum | SL4.0ch11 | 3 | CH_sly_222 | 4 | 5 | 0.00000119665 |
| Solanum lycopersicum | SL4.0ch02 | 3 | CH_sly_42 | 7 | 7 | 8.51618e-16 |
| Schrenkiella parvula | ch3-2 | 3 | CH_spa_103 | 3 | 3 | 0.0000339783 |
| Schrenkiella parvula | ch5-6 | 3 | CH_spa_5 | 6 | 6 | 0.0000000000000323501 |
| Solanum pennellii | Spenn-ch02 | 3 | CH_spe_297 | 3 | 4 | 0.000064732 |
| Solanum tuberosum | ST4.03ch02 | 3 | CH_stu_354 | 3 | 3 | 0.0000360005 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_271 | 3 | CH_tpr_15 | 7 | 9 | 0.0000000000000171552 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 3 | CH_tpr_38 | 5 | 5 | 0.000000000237098 |
| Vitis vinifera | chr4 | 3 | CH_vvi_287 | 3 | 4 | 0.0000901958 |
| Zea mays | 3 | 3 | CH_zma_208 | 3 | 3 | 0.0000816697 |
| Aethionema arabicum | LG-4 | 4 | CH_aar_41 | 5 | 5 | 0.0000000000510793 |
| Acer truncatum | chr4 | 4 | CH_acertr_241 | 3 | 3 | 0.00000991516 |
| Arabidopsis lyrata | scaffold_1 | 4 | CH_aly_13 | 10 | 34 | 3.17866e-17 |
| Arabidopsis lyrata | scaffold_6 | 4 | CH_aly_220 | 3 | 3 | 0.0000750228 |
| Aquilegia oxysepala | CHR03 | 4 | CH_aox_18 | 6 | 12 | 0.00000000000266622 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 4 | CH_arhy_238 | 4 | 4 | 0.0000000156647 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 4 | CH_arhy_434 | 3 | 4 | 0.000023254 |
| Arabidopsis thaliana | Chr5 | 4 | CH_ath_222 | 4 | 9 | 0.00000172512 |
| Arabidopsis thaliana | Chr1 | 4 | CH_ath_68 | 6 | 17 | 0.0000000000655771 |
| Arabidopsis thaliana | Chr1 | 4 | CH_ath_90 | 5 | 9 | 0.00000000108788 |
| Brassica carinata | ChrB05 | 4 | CH_bca_36 | 6 | 6 | 0.0000000000000379106 |
| Brassica napus | C02 | 4 | CH_bna_126 | 5 | 8 | 0.00000000304105 |
| Brassica napus | C09 | 4 | CH_bna_263 | 4 | 7 | 0.00000222609 |
| Brassica oleracea | C2 | 4 | CH_bol_140 | 4 | 6 | 0.000000332569 |
| Brassica oleracea | C9 | 4 | CH_bol_55 | 5 | 6 | 0.0000000000978964 |
| Brassica rapa | A02 | 4 | CH_bra_206 | 3 | 4 | 0.000136386 |
| Brassica rapa | A07 | 4 | CH_bra_207 | 3 | 4 | 0.000136386 |
| Capsicum annuum | PGAv.1.6.scaffold206 | 4 | CH_can_56 | 6 | 6 | 0.0000000000000153376 |
| Coffea canephora | chr11 | 4 | CH_ccan_181 | 3 | 20 | 0.0000173627 |
| Cardamine hirsuta | Chr6 | 4 | CH_chi_205 | 3 | 3 | 0.0000391015 |
| Cardamine hirsuta | Chr1 | 4 | CH_chi_37 | 6 | 6 | 0.0000000000000393311 |
| Cardamine hirsuta | Chr2 | 4 | CH_chi_388 | 3 | 6 | 0.000780126 |
| Carica papaya | supercontig_83 | 4 | CH_cpa_189 | 3 | 5 | 0.000131205 |
| Capsella rubella | scaffold_6 | 4 | CH_cru_111 | 4 | 4 | 0.0000000614039 |
| Capsella rubella | scaffold_1 | 4 | CH_cru_32 | 8 | 27 | 0.000000000000180824 |
| Eutrema salsugineum | scaffold_5 | 4 | CH_esa_131 | 3 | 3 | 0.0000176058 |
| Fragaria vesca | Fvb6 | 4 | CH_fve_221 | 3 | 3 | 0.0000211354 |
| Gossypium hirsutum | D09 | 4 | CH_ghi_301 | 4 | 7 | 0.00000229487 |
| Glycine max | Gm08 | 4 | CH_gma_348 | 3 | 4 | 0.000149408 |
| Gossypium raimondii | Chr06 | 4 | CH_gra_67 | 5 | 5 | 0.0000000000407725 |
| Helianthus annuus | HanXRQChr17 | 4 | CH_han_495 | 3 | 4 | 0.0000818393 |
| Lupinus albus | Lalb_Chr02 | 4 | CH_lal_271 | 3 | 3 | 0.000120894 |
| Lupinus albus | Lalb_Chr05 | 4 | CH_lal_272 | 3 | 3 | 0.000120894 |
| Lupinus albus | Lalb_Chr07 | 4 | CH_lal_62 | 5 | 5 | 0.000000000238286 |
| Magnolia biondii | Chr15 | 4 | CH_mbi_244 | 6 | 71 | 0.000000499779 |
| Magnolia biondii | Chr01 | 4 | CH_mbi_425 | 3 | 4 | 0.0000574288 |
| Magnolia biondii | Chr04 | 4 | CH_mbi_426 | 3 | 4 | 0.0000574288 |
| Malus domestica | Chr05 | 4 | CH_mdo_210 | 4 | 5 | 0.000000110977 |
| Medicago truncatula | chr1 | 4 | CH_mtr_128 | 6 | 8 | 0.00000000000882412 |
| Medicago truncatula | chr3 | 4 | CH_mtr_214 | 6 | 17 | 0.00000000386078 |
| Medicago truncatula | chr4 | 4 | CH_mtr_50 | 8 | 10 | 2.33823e-17 |
| Punica granatum | NC_045129.1 | 4 | CH_pgr_241 | 3 | 4 | 0.0000597944 |
| Pisum sativum | chr2LG1 | 4 | CH_psa_42 | 8 | 52 | 0.0000000000148475 |
| Phaseolus vulgaris | Chr03 | 4 | CH_pvu_197 | 3 | 3 | 0.0000163896 |
| Quercus lobata | CM012294 | 4 | CH_qlo_20 | 11 | 13 | 2.23552e-29 |
| Sapria himalayana | scaffold3_21451142 | 4 | CH_shi_108 | 3 | 3 | 0.0000047525 |
| Sapria himalayana | scaffold24_7948270 | 4 | CH_shi_12 | 6 | 10 | 0.0000000000000782784 |
| Sapria himalayana | scaffold33_6547121 | 4 | CH_shi_126 | 3 | 4 | 0.0000190029 |
| Solanum lycopersicum | SL4.0ch11 | 4 | CH_sly_222 | 4 | 5 | 0.00000119665 |
| Solanum lycopersicum | SL4.0ch02 | 4 | CH_sly_42 | 7 | 7 | 8.51618e-16 |
| Schrenkiella parvula | ch3-2 | 4 | CH_spa_103 | 3 | 3 | 0.0000339783 |
| Schrenkiella parvula | ch5-6 | 4 | CH_spa_5 | 6 | 6 | 0.0000000000000323501 |
| Solanum pennellii | Spenn-ch02 | 4 | CH_spe_297 | 3 | 4 | 0.000064732 |
| Solanum tuberosum | ST4.03ch02 | 4 | CH_stu_354 | 3 | 3 | 0.0000360005 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_271 | 4 | CH_tpr_15 | 7 | 9 | 0.0000000000000171552 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 4 | CH_tpr_38 | 5 | 5 | 0.000000000237098 |
| Vitis vinifera | chr4 | 4 | CH_vvi_287 | 3 | 4 | 0.0000901958 |
| Zea mays | 3 | 4 | CH_zma_208 | 3 | 3 | 0.0000816697 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |