Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Phaseolus vulgaris Chr08 1 CH_pvu_177 4 5 0.000000885419
Phaseolus vulgaris Chr08 2 CH_pvu_177 4 5 0.000000885419

Available child term results

Ontology identifier Description Number of clusters
17.1.1.1.1 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.rRNA transcription.rDNA chromatin transcription factor (NCL) 12
17.1.1.1.2 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.rRNA transcription.rDNA transcriptional regulator (NOF1) 8
17.1.1.1.3 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.rRNA transcription.rDNA transcriptional regulator (MAS2) 5
17.1.1.2.1.1 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.methylation.rRNA adenosine dimethylase (DIM1A) 2
17.1.1.2.1.4 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.methylation.rRNA guanosine methyltransferase (RID2/Bud23/WBSCR22) 6
17.1.1.2.1.5.1 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.methyltransferase component Nop1/fibrillarin 12
17.1.1.2.1.5.3 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.snoRNP scaffold component Nop58 10
17.1.1.2.1.5.4 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.component Snu13 8
17.1.1.2.2.1.1 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) rRNA pseudouridylation complex.pseudouridine synthase component Nap57/CBF5 16
17.1.1.2.2.1.2 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) rRNA pseudouridylation complex.core component Gar1 2
17.1.1.2.2.1.3 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) rRNA pseudouridylation complex.core component Nop10 2
17.1.1.2.2.1.4 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) rRNA pseudouridylation complex.non-core component Nhp2/Naf1 4
17.1.1.2.2.2 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.pseudouridylation.rRNA pseudouridine synthase (RsuA) 2
17.1.1.3 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.rRNA processing factor (APUM23) 10
17.1.1.4 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.rRNA processing factor (IRP1) 4
17.1.1.5 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.rRNA processing factor (RRP1) 2
17.1.1.6 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.RNA helicase (ROK1) 6
17.1.1.7 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.RNA endonuclease (FCF1) 4
17.1.1.8.1 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.ITS1 rRNA removal.assembly factor (BRX1) 2
17.1.1.8.2 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.ITS1 rRNA removal.pre-rRNA cleavage factor (SLX9) 10
17.1.1.8.3 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.ITS1 rRNA removal.pre-rRNA processing endonuclease (NOB1) 8
17.1.1.9.1 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.ITS2 rRNA removal.pre-rRNA cleavage factor (LAS1) 4
17.1.1.9.2 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.ITS2 rRNA removal.polynucleotide kinase (GRC3) 7
17.1.1.9.3 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.ITS2 rRNA removal.rRNA processing factor (APUM24) 10

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001