Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
Aa31LG5G16490 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.613 Anthoceros agrestis
Actinidia23492 Actinidia chinensis
Actinidia23493 Actinidia chinensis
Actinidia40166 Actinidia chinensis
Ah.04g154480 Amaranthus hybridus
AL3G16830 Arabidopsis lyrata
AL6G30790 Arabidopsis lyrata
Aqoxy1G03114 Aquilegia oxysepala
Aqoxy2G03333 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6R1BCK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CDG6HX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I4QQIE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JYJ007 Arachis hypogaea
AT3G06010 Arabidopsis thaliana
AT5G19310 Arabidopsis thaliana
ATR0626G379 Amborella trichopoda
Atru.chr4.2520 Acer truncatum
AUR62038085 Chenopodium quinoa
AUR62038161 Chenopodium quinoa
BcaC09g47872 Brassica carinata
BolC1t05642H Brassica oleracea
BraA01t04455Z Brassica rapa
CAN.G69.9 Capsicum annuum
CANSAT78G1321 Cannabis sativa
CARHR080510 Cardamine hirsuta
CARHR193660 Cardamine hirsuta
Carub.0003s0543 Capsella rubella
Carub.0006s1764 Capsella rubella
Ca_10932_v3 Cicer arietinum L.
Ca_24384_v3 Cicer arietinum L.
CBR_g29561 Chara braunii
Cc03_g03400 Coffea canephora
CDE04G0057 Ceratophyllum demersum
Cfa015609 Carpinus fangiana
Cfa023384 Carpinus fangiana
Ciclev10004335m.g Citrus clementina
CiPaw.01G162800 Carya illinoinensis
CiPaw.02G094700 Carya illinoinensis
ClCG06G005980 Citrullus lanatus
COL.COLO4_06204 Corchorus olitorius
Cpa.g.sc1278.1 Carica papaya
CsaV3_6G038290 Cucumis sativus L.
CSS0022730 Camellia sinensis var. sinensis
CSS0044999 Camellia sinensis var. sinensis
DCAR_002397 Daucus carota
DCAR_011798 Daucus carota
DCAR_019497 Daucus carota
DCAR_027167 Daucus carota
Dinv38416 Davidia involucrata
Dinv44505 Davidia involucrata
Duzib151G0379 Durio zibethinus
Duzib212G0338 Durio zibethinus
ECA234G3449 Erigeron canadensis
EL10As3g23347 Beta vulgaris
Eucgr.B01100 Eucalyptus grandis
FAN07G1560 Fragaria x ananassa
FAN12G2172 Fragaria x ananassa
FAN17G1856 Fragaria x ananassa
FAN22G2243 Fragaria x ananassa
FvH4_4g14970 Fragaria vesca
Glyma.10G250500 Glycine max
Glyma.11G004100 Glycine max
Glyma.20G143200 Glycine max
Gohir.A10G118000 Gossypium hirsutum
Gohir.D10G148800 Gossypium hirsutum
Gorai.011G166100 Gossypium raimondii
GSVIVG01017921001 Vitis vinifera
HanXRQChr09g0247211 Helianthus annuus
HanXRQChr09g0247251 Helianthus annuus
Haze_00933 Corylus avellana
Haze_26723 Corylus avellana
HPP92_009639 Vanilla planifolia
Hund12165 Selenicereus undatus
Lalb_Chr02g0144671 Lupinus albus
Lj1g0024868 Lotus japonicus
Lj3A741T68 Lonicera japonica
Lj5g0020197 Lotus japonicus
Lj6C597G4 Lonicera japonica
Lsat_1_v5_gn_7_66780 Lactuca sativa
Manes.03G181600 Manihot esculenta
Manes.15G026000 Manihot esculenta
Mapoly0030s0101 Marchantia polymorpha
MCO11G011 Micromonas commoda
MD13G1186900 Malus domestica
MD16G1187800 Malus domestica
Medtr1g105050 Medicago truncatula
Medtr5g005840 Medicago truncatula
MELO3C014493.2 Cucumis melo
Migut.G00313 Erythranthe guttata
MSTRG.10001 Avicennia marina
MSTRG.4011 Avicennia marina
Nitab4.5_0000144g0090 Nicotiana tabacum
Nitab4.5_0000180g0040 Nicotiana tabacum
Nn1g02228 Nelumbo nucifera
Nn4g26250 Nelumbo nucifera
Oeu034364.1 Olea europaea
Oeu042797.1 Olea europaea
Os05g0144300 Oryza sativa ssp. japonica
Peaxi162Scf00437g00634 Petunia axillaris
PGR142G0455 Punica granatum
PGR142G2257 Punica granatum
Phvul.007G054000 Phaseolus vulgaris
Potri.008G149900 Populus trichocarpa
Potri.010G091200 Populus trichocarpa
Pp3c27_3890 Physcomitrium patens
PRCOL_00001825 Prasinoderma coloniale
Prupe.1G154600 Prunus persica
Psat4g211240 Pisum sativum
Psat6g209840 Pisum sativum
PSO170G0309 Papaver somniferum
PSO302G0005 Papaver somniferum
PSO566G0247 Papaver somniferum
QL06p003521 Quercus lobata
RcHm_v2.0_Chr4g0417121 Rosa chinensis
Rhsim02G0022300 Rhododendron simsii
Rhsim04G0204200 Rhododendron simsii
Sabra08G0114000 Salix brachista
Sabra10G0052000 Salix brachista
SalBow2G2646 Salvia bowleyana
Sc19g0004350 Simmondsia chinensis
Sed0009592 Sechium edule
SEGI_40932 Sequoiadendron giganteum
SGA_v2.0_scaffold39G15292 Striga asiatica
SHI00411 Sapria himalayana
SMO141G0237 Selaginella moellendorffii
Solyc01g079690.4 Solanum lycopersicum
Sopen01g031470 Solanum pennellii
Sp3g04950 Schrenkiella parvula
Sp6g25110 Schrenkiella parvula
TAR636G2934 Trochodendron aralioides
THA.LOC104818783 Tarenaya hassleriana
Thecc.04G226600 Theobroma cacao
Thhalv10015665m.g Eutrema salsugineum
Thhalv10019947m.g Eutrema salsugineum
TPR.G37980 Trifolium pratense
TPR.G5483 Trifolium pratense
TWI73G0072 Tripterygium wilfordii
unitig_749.g14068 Utricularia gibba
vmacro15323 Vaccinium macrocarpon
VMungo0720G1811 Vigna mungo
Zm00001eb108690 Zea mays
Zm00001eb417900 Zea mays

User provided reference genes

Program Settings