Gene: AT5G19310

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G19310
  • Transcript Identifier AT5G19310.1
  • Gene Type Coding gene
  • Location Chr5 : 6498906-6503432 : positive

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G19310.1
  • symbol CHR23
  • Alias AtCHR23
  • full_name chromatin remodeling 23
  • uniprot F4K128

Descriptions

  • Description homeotic protein regulator
  • Computational description Homeotic gene regulator; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT3G06010.1); Has 29243 Blast hits to 22828 proteins in 2261 species: Archae - 168; Bacteria - 6495; Metazoa - 7843; Fungi - 5018; Plants - 2070; Viruses - 244; Other Eukaryotes - 7405 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043044
IBA
GOA DatabaseATP-dependent chromatin remodeling
GO:0040008
IEA
GOA Databaseregulation of growth
GO:0006325
IEA
GOA Databasechromatin organization
GO:0032508
IEA
GOA DatabaseDNA duplex unwinding
GO:0045944
IBA
Gene Ontologypositive regulation of transcription by RNA polymerase II1
GO:0006338
IBA
Gene Ontologychromatin remodeling1
GO:0010231
IMP
Gene Ontologymaintenance of seed dormancy2
GO:0009826
IMP
Gene Ontologyunidimensional cell growth3
GO:0010492
IMP
Gene Ontologymaintenance of shoot apical meristem identity4
GO:0010078
IMP
Gene Ontologymaintenance of root meristem identity4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008094
IBA
Gene OntologyATPase, acting on DNA1
GO:0042393
IEA
Gene Ontologyhistone binding
GO:0042393
IEA
InterProhistone binding
GO:0070615
IEA
GOA Databasenucleosome-dependent ATPase activity
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003678
IEA
Gene OntologyDNA helicase activity
GO:0003677
IBA
Gene OntologyDNA binding1
GO:0031490
IDA
Gene Ontologychromatin DNA binding4
GO:0140658
IEA
Gene OntologyATPase-dependent chromatin remodeler activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR000330 SNF2, N-terminal
IPR038718 SNF2-like, N-terminal domain superfamily
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR029295 Snf2, ATP coupling domain
Mapman id Description
12.4.1.1.1 Chromatin organisation.nucleosome remodeling.SWI/SNF chromatin remodeling complexes.core modules.ATPase component SYD/BRM/MINU