Gene: AT3G06010

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G06010
  • Transcript Identifier AT3G06010.1
  • Gene Type Coding gene
  • Location Chr3 : 1802435-1807284 : negative

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G06010.1
  • symbol ATCHR12
  • uniprot F4J9M5

Descriptions

  • Description SNF2/Brahma-type chromatin-remodeling protein CHR12
  • Computational description ATCHR12; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to water deprivation, response to salt stress, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT5G19310.1); Has 23556 Blast hits to 19403 proteins in 2220 species: Archae - 141; Bacteria - 6122; Metazoa - 5759; Fungi - 4503; Plants - 1859; Viruses - 268; Other Eukaryotes - 4904 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006338
IBA
Gene Ontologychromatin remodeling1
GO:0043044
IBA
GOA DatabaseATP-dependent chromatin remodeling
GO:0040008
IEA
GOA Databaseregulation of growth
GO:0006325
IEA
GOA Databasechromatin organization
GO:0032508
IEA
GOA DatabaseDNA duplex unwinding
GO:0045944
IBA
Gene Ontologypositive regulation of transcription by RNA polymerase II1
GO:0010231
IMP
Gene Ontologymaintenance of seed dormancy2
GO:0010492
IMP
Gene Ontologymaintenance of shoot apical meristem identity3
GO:0010078
IMP
Gene Ontologymaintenance of root meristem identity3
GO:0009651
IMP
Gene Ontologyresponse to salt stress4
GO:0009414
IMP
Gene Ontologyresponse to water deprivation4
GO:0009408
IMP
Gene Ontologyresponse to heat4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Os05g0144300
GO:0042393
IEA
Gene Ontologyhistone binding
GO:0042393
IEA
InterProhistone binding
GO:0070615
IEA
GOA Databasenucleosome-dependent ATPase activity
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003678
IEA
Gene OntologyDNA helicase activity
GO:0008094
IBA
Gene OntologyATPase, acting on DNA1
GO:0003677
IBA
Gene OntologyDNA binding1
GO:0140658
IEA
Gene OntologyATPase-dependent chromatin remodeler activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038718 SNF2-like, N-terminal domain superfamily
IPR000330 SNF2, N-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001650 Helicase, C-terminal
IPR029295 Snf2, ATP coupling domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
12.4.1.1.1 Chromatin organisation.nucleosome remodeling.SWI/SNF chromatin remodeling complexes.core modules.ATPase component SYD/BRM/MINU