Gene: Pp3c27_3890

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c27_3890
  • Transcript Identifier Pp3c27_3890V3.2
  • Gene Type Coding gene
  • Location Chr27 : 2162866-2167445 : positive

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c27_3890V3.2
  • pacid 32951542
  • alias Phpat.027G017100
  • alias Phypa_40536
  • alias Pp1s54_314V6
  • uniprot A9S7V7

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045944
IBA
GOA Databasepositive regulation of transcription by RNA polymerase II
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT3G06010
GO:0010078
ISO
PLAZA Integrative Orthologymaintenance of root meristem identity AT5G19310
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT3G06010
GO:0009408
ISO
PLAZA Integrative Orthologyresponse to heat AT3G06010
GO:0009826
ISO
PLAZA Integrative Orthologyunidimensional cell growth AT5G19310
GO:0010231
ISO
PLAZA Integrative Orthologymaintenance of seed dormancy AT5G19310
GO:0010492
ISO
PLAZA Integrative Orthologymaintenance of shoot apical meristem identity AT5G19310
GO:0043044
IBA
GOA DatabaseATP-dependent chromatin remodeling

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Os05g0144300
GO:0031490
ISO
PLAZA Integrative Orthologychromatin DNA binding AT5G19310
GO:0042393
IEA
GOA Databasehistone binding
GO:0042393
IEA
InterProhistone binding
GO:0003677
IBA
GOA DatabaseDNA binding
GO:0008094
IBA
GOA DatabaseATPase, acting on DNA
GO:0070615
IEA
GOA Databasenucleosome-dependent ATPase activity
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029295 Snf2, ATP coupling domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR000330 SNF2, N-terminal
IPR038718 SNF2-like, N-terminal domain superfamily
IPR001650 Helicase, C-terminal
Mapman id Description
12.4.1.1.1 Chromatin organisation.nucleosome remodeling.SWI/SNF chromatin remodeling complexes.core modules.ATPase component SYD/BRM/MINU