Gene: Sopen01g031470

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g031470
  • Transcript Identifier Sopen01g031470.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 88974440-88990053 : negative

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g031470.1

Descriptions

  • Description Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein. AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress. | ATCHR12 | FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding | INVOLVED IN: response to water deprivation, response to salt stress, response to heat | LOCATED IN: cellular_component unknown | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 9 growth stages | CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain , SNF2-related | BEST Arabidopsis thaliana protein match is: Homeotic gene regulator
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010492
ISO
PLAZA Integrative Orthologymaintenance of shoot apical meristem identity AT5G19310
GO:0010231
ISO
PLAZA Integrative Orthologymaintenance of seed dormancy AT5G19310
GO:0009826
ISO
PLAZA Integrative Orthologyunidimensional cell growth AT5G19310
GO:0009408
ISO
PLAZA Integrative Orthologyresponse to heat AT3G06010
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT3G06010
GO:0010078
ISO
PLAZA Integrative Orthologymaintenance of root meristem identity AT5G19310
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT3G06010

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042393
IEA
InterProhistone binding
GO:0005524
IEA
InterProATP binding
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0031490
ISO
PLAZA Integrative Orthologychromatin DNA binding AT5G19310
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Os05g0144300

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus Os05g0144300

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
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InterPro Description
IPR029295 Snf2, ATP coupling domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001650 Helicase, C-terminal
IPR000330 SNF2, N-terminal
IPR038718 SNF2-like, N-terminal domain superfamily
Mapman id Description
12.4.1.1.1 Chromatin organisation.nucleosome remodeling.SWI/SNF chromatin remodeling complexes.core modules.ATPase component SYD/BRM/MINU