Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p14690 Brassica napus
A08p35980 Brassica napus
A10p05100 Brassica napus
A10p23630 Brassica napus
Aa31LG11G14290 Aethionema arabicum
Aa31LG5G5950 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2319 Anthoceros agrestis
Actinidia11169 Actinidia chinensis
Actinidia24406 Actinidia chinensis
Actinidia33004 Actinidia chinensis
Ah.06g191410 Amaranthus hybridus
AL1G16440 Arabidopsis lyrata
AL4G25980 Arabidopsis lyrata
AL6G26110 Arabidopsis lyrata
Aqoxy3G00633 Aquilegia oxysepala
Aqoxy3G00636 Aquilegia oxysepala
Aqoxy4G00233 Aquilegia oxysepala
Aqoxy6G03072 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.D09E4Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ECK8LG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F3ECJ7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HKX9QT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NXZ6PK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V0L876 Arachis hypogaea
AT1G06430 Arabidopsis thaliana
AT2G30950 Arabidopsis thaliana
AT5G15250 Arabidopsis thaliana
ATR0317G110 Amborella trichopoda
ATR0564G045 Amborella trichopoda
ATR0564G391 Amborella trichopoda
Atru.chr6.2755 Acer truncatum
AUR62004729 Chenopodium quinoa
AUR62024043 Chenopodium quinoa
AUR62037524 Chenopodium quinoa
AUR62040431 Chenopodium quinoa
BcaB02g06795 Brassica carinata
BcaB02g10354 Brassica carinata
BcaB03g13417 Brassica carinata
BcaB08g35176 Brassica carinata
BcaB08g36913 Brassica carinata
BcaC02g11181 Brassica carinata
BcaC04g18965 Brassica carinata
BcaC05g24271 Brassica carinata
BcaC07g36810 Brassica carinata
BolC4t23486H Brassica oleracea
BolC5t29241H Brassica oleracea
BolC8t47052H Brassica oleracea
BolC9t59025H Brassica oleracea
BraA05t20398Z Brassica rapa
BraA08t35505Z Brassica rapa
BraA10t42775Z Brassica rapa
BraA10t44428Z Brassica rapa
C04p19540 Brassica napus
C05p04690 Brassica napus
C08p02580 Brassica napus
C09p61890 Brassica napus
CAN.G1360.9 Capsicum annuum
CAN.G809.79 Capsicum annuum
CANSAT64G1095 Cannabis sativa
CANSAT64G2416 Cannabis sativa
CARHR006040 Cardamine hirsuta
CARHR124470 Cardamine hirsuta
Carub.0001s0578 Capsella rubella
Carub.0004s1217 Capsella rubella
Carub.0006s1343 Capsella rubella
Ca_02005_v3 Cicer arietinum L.
Ca_06769_v3 Cicer arietinum L.
Ca_18250_v3 Cicer arietinum L.
CBR_g36283 Chara braunii
Cc05_g08640 Coffea canephora
Cc07_g12510 Coffea canephora
CDE05G2327 Ceratophyllum demersum
CDE05G2363 Ceratophyllum demersum
Cfa007558 Carpinus fangiana
Cfa022926 Carpinus fangiana
Ciclev10011227m.g Citrus clementina
Ciclev10014471m.g Citrus clementina
CiPaw.03G026100 Carya illinoinensis
CiPaw.04G134700 Carya illinoinensis
ClCG07G002570 Citrullus lanatus
ClCG09G018210 Citrullus lanatus
COL.COLO4_04929 Corchorus olitorius
COL.COLO4_10971 Corchorus olitorius
Cpa.g.sc140.49 Carica papaya
Cre17.g720050 Chlamydomonas reinhardtii
CsaV3_5G038040 Cucumis sativus L.
CsaV3_7G005790 Cucumis sativus L.
CSS0004769 Camellia sinensis var. sinensis
CSS0021220 Camellia sinensis var. sinensis
CSS0025086 Camellia sinensis var. sinensis
CSS0028048 Camellia sinensis var. sinensis
CSS0029386 Camellia sinensis var. sinensis
CSS0033124 Camellia sinensis var. sinensis
CSS0041542 Camellia sinensis var. sinensis
CSS0045434 Camellia sinensis var. sinensis
DCAR_003385 Daucus carota
DCAR_009779 Daucus carota
Dinv06194 Davidia involucrata
Dinv08368 Davidia involucrata
Duzib251G0760 Durio zibethinus
ECA233G5492 Erigeron canadensis
ECA238G3618 Erigeron canadensis
EL10Ac1g01811 Beta vulgaris
EL10Ac9g20989 Beta vulgaris
Eucgr.A01933 Eucalyptus grandis
Eucgr.J01348 Eucalyptus grandis
FAN02G2241 Fragaria x ananassa
FAN02G2883 Fragaria x ananassa
FAN05G0026 Fragaria x ananassa
FAN05G0418 Fragaria x ananassa
FAN05G3451 Fragaria x ananassa
FAN09G3290 Fragaria x ananassa
FAN14G1671 Fragaria x ananassa
FAN14G2221 Fragaria x ananassa
FAN14G4195 Fragaria x ananassa
FvH4_6g27780 Fragaria vesca
FvH4_6g48450 Fragaria vesca
Glyma.05G132000 Glycine max
Glyma.08G086600 Glycine max
Glyma.09G052600 Glycine max
Glyma.15G158900 Glycine max
Glyma.18G259700 Glycine max
Gohir.A01G022900 Gossypium hirsutum
Gohir.A05G366700 Gossypium hirsutum
Gohir.D01G020900 Gossypium hirsutum
Gohir.D04G048400 Gossypium hirsutum
Gorai.002G023400 Gossypium raimondii
Gorai.012G053900 Gossypium raimondii
GSVIVG01011397001 Vitis vinifera
GSVIVG01020760001 Vitis vinifera
HanXRQChr12g0365611 Helianthus annuus
HanXRQChr17g0559211 Helianthus annuus
HanXRQChr17g0559641 Helianthus annuus
Haze_13433 Corylus avellana
Haze_14523 Corylus avellana
Hma1.2p1_0085F.1_g044020 Hydrangea macrophylla
Hma1.2p1_0178F.1_g078470 Hydrangea macrophylla
HPP92_025467 Vanilla planifolia
HPP92_025468 Vanilla planifolia
Hund06854 Selenicereus undatus
Hund07766 Selenicereus undatus
Lalb_Chr07g0188411 Lupinus albus
Lj1A675G57 Lonicera japonica
Lj1g0018306 Lotus japonicus
Lj4A249T59 Lonicera japonica
Lj4g0026870 Lotus japonicus
Lj6g0018697 Lotus japonicus
Lj8A99T67 Lonicera japonica
Lsat_1_v5_gn_2_72240 Lactuca sativa
Lsat_1_v5_gn_8_142340 Lactuca sativa
Manes.02G046700 Manihot esculenta
Manes.02G089700 Manihot esculenta
Mapoly0169s0024 Marchantia polymorpha
MBI04_g09490_MAGBIO Magnolia biondii
MBI05_g29539_MAGBIO Magnolia biondii
MCO01G129 Micromonas commoda
MCO14G307 Micromonas commoda
MCO15G698 Micromonas commoda
MD09G1051800 Malus domestica
MD09G1234500 Malus domestica
MD17G1263600 Malus domestica
Medtr2g438140 Medicago truncatula
Medtr4g094662 Medicago truncatula
Medtr7g010800 Medicago truncatula
MELO3C018713.2 Cucumis melo
MELO3C021988.2 Cucumis melo
Migut.M00237 Erythranthe guttata
MSTRG.15078 Avicennia marina
Nitab4.5_0000108g0050 Nicotiana tabacum
Nitab4.5_0000249g0010 Nicotiana tabacum
Nitab4.5_0005922g0030 Nicotiana tabacum
Nitab4.5_0006392g0050 Nicotiana tabacum
Nn3g17250 Nelumbo nucifera
Nn6g34474 Nelumbo nucifera
Oeu004367.1 Olea europaea
Oeu004372.1 Olea europaea
Oeu004374.1 Olea europaea
Oeu004404.1 Olea europaea
Oeu024436.1 Olea europaea
Oeu058863.1 Olea europaea
Os06g0229000 Oryza sativa ssp. japonica
Os06g0229066 Oryza sativa ssp. japonica
Os06g0669400 Oryza sativa ssp. japonica
Peaxi162Scf00229g00412 Petunia axillaris
Peaxi162Scf00344g01718 Petunia axillaris
Peaxi162Scf00469g00627 Petunia axillaris
PGR042G2979 Punica granatum
PGR083G1179 Punica granatum
PGSC0003DMG400017311 Solanum tuberosum
PGSC0003DMG400017730 Solanum tuberosum
Phvul.002G190900 Phaseolus vulgaris
Phvul.008G040800 Phaseolus vulgaris
Phvul.009G241100 Phaseolus vulgaris
Potri.002G215100 Populus trichocarpa
Potri.002G220366 Populus trichocarpa
Potri.014G139500 Populus trichocarpa
Potri.017G084000 Populus trichocarpa
Pp3c12_22830 Physcomitrium patens
Pp3c20_5760 Physcomitrium patens
Pp3c23_14660 Physcomitrium patens
Pp3c23_14665 Physcomitrium patens
Pp3c24_15420 Physcomitrium patens
PRCOL_00003779 Prasinoderma coloniale
PRCOL_00004074 Prasinoderma coloniale
Prupe.3G112700 Prunus persica
Prupe.3G266900 Prunus persica
Psat1g149440 Pisum sativum
Psat7g088320 Pisum sativum
PSO170G5871 Papaver somniferum
PSO782G5203 Papaver somniferum
QL02p082338 Quercus lobata
QL08p042510 Quercus lobata
RcHm_v2.0_Chr2g0131061 Rosa chinensis
RcHm_v2.0_Chr2g0168361 Rosa chinensis
Rhsim06G0127100 Rhododendron simsii
Rhsim10G0187700 Rhododendron simsii
Rhsim10G0188100 Rhododendron simsii
Sabra02G0167300 Salix brachista
Sabra14G0105200 Salix brachista
SalBow5G0522 Salvia bowleyana
SalBow7G3505 Salvia bowleyana
Sc20g0000880 Simmondsia chinensis
Sc21g0003990 Simmondsia chinensis
Sed0001406 Sechium edule
SEGI_04240 Sequoiadendron giganteum
SEGI_05011 Sequoiadendron giganteum
SGA_v2.0_scaffold4G02110 Striga asiatica
SMO143G0330 Selaginella moellendorffii
SMO164G0126 Selaginella moellendorffii
Solyc02g081550.3 Solanum lycopersicum
Solyc07g055320.4 Solanum lycopersicum
Sopen02g026180 Solanum pennellii
Sopen07g026900 Solanum pennellii
Sp1g05190 Schrenkiella parvula
Sp4g13440 Schrenkiella parvula
TAR371G0649 Trochodendron aralioides
TAR624G0516 Trochodendron aralioides
TAR626G1830 Trochodendron aralioides
THA.LOC104826230 Tarenaya hassleriana
Thecc.02G213800 Theobroma cacao
Thecc.04G082700 Theobroma cacao
Thhalv10006971m.g Eutrema salsugineum
Thhalv10016003m.g Eutrema salsugineum
Thhalv10016334m.g Eutrema salsugineum
TPR.G15080 Trifolium pratense
TPR.G15083 Trifolium pratense
TPR.G28798 Trifolium pratense
TPR.G2919 Trifolium pratense
TPR.G33586 Trifolium pratense
TWI23G1254 Tripterygium wilfordii
TWI59G0450 Tripterygium wilfordii
TWI60G1097 Tripterygium wilfordii
unitig_746.g26664 Utricularia gibba
unitig_899.g15332 Utricularia gibba
vmacro12401 Vaccinium macrocarpon
vmacro20432 Vaccinium macrocarpon
VMungo0251G1687 Vigna mungo
VMungo1309G0177 Vigna mungo
VMungo1383G3435 Vigna mungo
Zm00001eb274190 Zea mays
Zm00001eb279710 Zea mays
Zm00001eb389930 Zea mays

User provided reference genes

Program Settings