Gene: Carub.0001s0578
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0001s0578
- Transcript Identifier Carub.0001s0578.1
- Gene Type Coding gene
- Location scaffold_1 : 2024390-2026697 : negative
Gene Family Information
- ID HOM05D000181
- #Genes/#Species 2101/100
- Phylogenetic origin
- ID ORTHO05D002783
- #Genes/#Species 262/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id Carub.0001s0578.v1.1
- pacid 39230375
- synonym Carubv10011447m.g
Descriptions
- Description PTHR23076//PTHR23076:SF60 - METALLOPROTEASE M41 FTSH // SUBFAMILY NOT NAMED
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006508 | IEA | InterPro | proteolysis | |
| GO:0010304 | ISO | PLAZA Integrative Orthology | PSII associated light-harvesting complex II catabolic process | AT1G06430 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0016887 | IEA | InterPro | ATP hydrolysis activity | |
| GO:0004176 | IEA | InterPro | ATP-dependent peptidase activity | |
| GO:0004222 | IEA | InterPro | metalloendopeptidase activity | |
| GO:0008270 | IEA | InterPro | zinc ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016020 | IEA | InterPro | membrane | |
| GO:0016021 | IEA | InterPro | integral component of membrane | |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT1G06430 |
| GO:0009941 | ISO | PLAZA Integrative Orthology | chloroplast envelope | AT1G06430 |
| GO:0009534 | ISO | PLAZA Integrative Orthology | chloroplast thylakoid | AT1G06430 |
| GO:0009535 | ISO | PLAZA Integrative Orthology | chloroplast thylakoid membrane | AT1G06430 |
| GO:0009579 | ISO | PLAZA Integrative Orthology | thylakoid | AT1G06430 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR003959 | ATPase, AAA-type, core |
| IPR037219 | Peptidase M41-like |
| IPR005936 | Peptidase, FtsH |
| IPR011546 | Peptidase M41, FtsH extracellular |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR000642 | Peptidase M41 |
| IPR003593 | AAA+ ATPase domain |
| IPR041569 | AAA ATPase, AAA+ lid domain |
| Mapman id | Description |
|---|---|
| 1.1.1.4.2 | Photosynthesis.photophosphorylation.photosystem II.repair and reassembly cycle.protease (FtsH2/8) |
| 19.4.5.8.2.1 | Protein homeostasis.proteolysis.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.component FtsH1/2/5/6/8 |