Gene: Sopen07g026900

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen07g026900
  • Transcript Identifier Sopen07g026900.1
  • Gene Type Coding gene
  • Location Spenn-ch07 : 72655083-72657808 : positive

Gene Family Information

  • ID HOM05D000181
  • #Genes/#Species 2101/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen07g026900.1

Descriptions

  • Description Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity. | VARIEGATED 2 (VAR2) | FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding | INVOLVED IN: photoinhibition, oxygen and reactive oxygen species metabolic process, thylakoid membrane organization, PSII associated light-harvesting complex II catabolic process, protein catabolic process | LOCATED IN: in 6 components | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH , ATPase, AAA type, core , ATPase, AAA-type, core , ATPase, AAA-type, conserved site , Peptidase M41 , Peptidase M41, FtsH extracellular | BEST Arabidopsis thaliana protein match is: FTSH protease 8
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010205
ISO
PLAZA Integrative Orthologyphotoinhibition AT2G30950
GO:0010304
ISO
PLAZA Integrative OrthologyPSII associated light-harvesting complex II catabolic process AT1G06430
GO:0010206
ISO
PLAZA Integrative Orthologyphotosystem II repair AT2G30950
GO:0010027
ISO
PLAZA Integrative Orthologythylakoid membrane organization AT2G30950
GO:0048564
ISO
PLAZA Integrative Orthologyphotosystem I assembly AT2G30950
GO:0072593
ISO
PLAZA Integrative Orthologyreactive oxygen species metabolic process AT2G30950
GO:0009658
ISO
PLAZA Integrative Orthologychloroplast organization AT2G30950
GO:0030163
ISO
PLAZA Integrative Orthologyprotein catabolic process AT2G30950
GO:0006508
IEA
InterProproteolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004176
IEA
InterProATP-dependent peptidase activity
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0005524
IEA
InterProATP binding
GO:0004222
IEA
InterPrometalloendopeptidase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009535
ISO
PLAZA Integrative Orthologychloroplast thylakoid membrane AT1G06430
GO:0031977
ISO
PLAZA Integrative Orthologythylakoid lumen AT2G30950
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT1G06430
GO:0009579
ISO
PLAZA Integrative Orthologythylakoid AT1G06430
GO:0009534
ISO
PLAZA Integrative Orthologychloroplast thylakoid AT1G06430
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT1G06430
GO:0016020
IEA
InterPromembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR041569 AAA ATPase, AAA+ lid domain
IPR003593 AAA+ ATPase domain
IPR037219 Peptidase M41-like
IPR003959 ATPase, AAA-type, core
IPR005936 Peptidase, FtsH
IPR000642 Peptidase M41
IPR027417 P-loop containing nucleoside triphosphate hydrolase
Mapman id Description
1.1.1.4.2 Photosynthesis.photophosphorylation.photosystem II.repair and reassembly cycle.protease (FtsH2/8)
19.4.5.8.2.1 Protein homeostasis.proteolysis.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.component FtsH1/2/5/6/8