Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p28170 Brassica napus
A05p43070 Brassica napus
A06p47570 Brassica napus
Aa31LG5G14850 Aethionema arabicum
Aa31LG5G3280 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2687 Anthoceros agrestis
Actinidia04678 Actinidia chinensis
Actinidia09520 Actinidia chinensis
Actinidia30132 Actinidia chinensis
Actinidia39990 Actinidia chinensis
Ah.02g118320 Amaranthus hybridus
Ah.08g218230 Amaranthus hybridus
Ah.13g076670 Amaranthus hybridus
AL1G13660 Arabidopsis lyrata
AL2G20430 Arabidopsis lyrata
AL8G16110 Arabidopsis lyrata
Aqoxy2G03743 Aquilegia oxysepala
Aqoxy5G00153 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.68RZIY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6R0DDZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FB4BVM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K131WV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K3KASK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P6V57K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W86IKX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YP76SE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZB9HG3 Arachis hypogaea
AT1G04050 Arabidopsis thaliana
AT3G04380 Arabidopsis thaliana
AT5G43990 Arabidopsis thaliana
ATR0736G166 Amborella trichopoda
ATR0736G174 Amborella trichopoda
ATR0787G208 Amborella trichopoda
ATR1025G001 Amborella trichopoda
ATR1025G002 Amborella trichopoda
Atru.chr2.1053 Acer truncatum
Atru.chr5.1822 Acer truncatum
Atru.chr5.1823 Acer truncatum
Atru.chr5.3447 Acer truncatum
AUR62000625 Chenopodium quinoa
AUR62006978 Chenopodium quinoa
AUR62008788 Chenopodium quinoa
AUR62025454 Chenopodium quinoa
AUR62025455 Chenopodium quinoa
BcaB04g19337 Brassica carinata
BcaB07g30548 Brassica carinata
BcaC01g04377 Brassica carinata
BcaC03g16622 Brassica carinata
BcaC05g30199 Brassica carinata
BcaC05g30227 Brassica carinata
BcaC06g31665 Brassica carinata
BcaC06g34606 Brassica carinata
BolC2t10499H Brassica oleracea
BolC3t16348H Brassica oleracea
BolC5t34936H Brassica oleracea
BolC7t43183H Brassica oleracea
BraA02t07852Z Brassica rapa
BraA05t23051Z Brassica rapa
BraA06t27625Z Brassica rapa
C02p44550 Brassica napus
C03p40800 Brassica napus
C05p62820 Brassica napus
C07p26560 Brassica napus
CAN.G1487.2 Capsicum annuum
CAN.G220.78 Capsicum annuum
CAN.G771.39 Capsicum annuum
CAN.G941.29 Capsicum annuum
CANSAT01G3020 Cannabis sativa
CANSAT54G0731 Cannabis sativa
CARHR003400 Cardamine hirsuta
CARHR078560 Cardamine hirsuta
CARHR179330 Cardamine hirsuta
Carub.0001s0321 Capsella rubella
Carub.0003s0359 Capsella rubella
Carub.0008s0456 Capsella rubella
Ca_08736_v3 Cicer arietinum L.
Ca_09651_v3 Cicer arietinum L.
Ca_10022_v3 Cicer arietinum L.
Ca_29586_v3 Cicer arietinum L.
CBR_g28480 Chara braunii
CBR_g34703 Chara braunii
Cc01_g17860 Coffea canephora
Cc01_g17870 Coffea canephora
Cc03_g06220 Coffea canephora
Cc03_g06230 Coffea canephora
Cc08_g06310 Coffea canephora
Cc09_g02870 Coffea canephora
CDE05G1476 Ceratophyllum demersum
CDE05G1865 Ceratophyllum demersum
CDE08G0750 Ceratophyllum demersum
CDE08G1534 Ceratophyllum demersum
Cfa006374 Carpinus fangiana
Cfa014776 Carpinus fangiana
Ciclev10018896m.g Citrus clementina
Ciclev10027963m.g Citrus clementina
Ciclev10030747m.g Citrus clementina
CiPaw.03G270100 Carya illinoinensis
CiPaw.04G190100 Carya illinoinensis
CiPaw.07G073900 Carya illinoinensis
ClCG06G001460 Citrullus lanatus
ClCG11G010430 Citrullus lanatus
COL.COLO4_10579 Corchorus olitorius
COL.COLO4_15515 Corchorus olitorius
COL.COLO4_17608 Corchorus olitorius
COL.COLO4_26719 Corchorus olitorius
COL.COLO4_36727 Corchorus olitorius
Cpa.g.sc165.20 Carica papaya
Cpa.g.sc51.1 Carica papaya
Cpa.g.sc51.2 Carica papaya
Cpa.g.sc87.19 Carica papaya
Cre17.g732901 Chlamydomonas reinhardtii
CsaV3_2G009930 Cucumis sativus L.
CsaV3_6G007420 Cucumis sativus L.
CSS0013114 Camellia sinensis var. sinensis
CSS0020820 Camellia sinensis var. sinensis
CSS0025855 Camellia sinensis var. sinensis
CSS0027145 Camellia sinensis var. sinensis
CSS0031500 Camellia sinensis var. sinensis
CSS0035527 Camellia sinensis var. sinensis
CSS0037082 Camellia sinensis var. sinensis
CSS0045777 Camellia sinensis var. sinensis
DCAR_004684 Daucus carota
DCAR_012580 Daucus carota
DCAR_024288 Daucus carota
Dinv02909 Davidia involucrata
Dinv16394 Davidia involucrata
Dinv25028 Davidia involucrata
Dinv27107 Davidia involucrata
Dinv34666 Davidia involucrata
Dinv34667 Davidia involucrata
Duzib132G1265 Durio zibethinus
Duzib138G0819 Durio zibethinus
Duzib211G0287 Durio zibethinus
ECA236G2323 Erigeron canadensis
ECA238G1878 Erigeron canadensis
ECA247G3020 Erigeron canadensis
EL10Ac4g09749 Beta vulgaris
EL10Ac7g17673 Beta vulgaris
Eucgr.C01189 Eucalyptus grandis
Eucgr.D02001 Eucalyptus grandis
Eucgr.K01433 Eucalyptus grandis
FAN02G3509 Fragaria x ananassa
FAN05G0097 Fragaria x ananassa
FAN05G3363 Fragaria x ananassa
FAN09G3744 Fragaria x ananassa
FAN12G4086 Fragaria x ananassa
FAN14G4353 Fragaria x ananassa
FAN14G5550 Fragaria x ananassa
FAN15G3455 Fragaria x ananassa
FAN17G2334 Fragaria x ananassa
FAN20G0010 Fragaria x ananassa
FAN20G0783 Fragaria x ananassa
FAN20G2690 Fragaria x ananassa
FAN22G0344 Fragaria x ananassa
FAN23G0544 Fragaria x ananassa
FAN24G0471 Fragaria x ananassa
FAN24G0771 Fragaria x ananassa
FAN25G3698 Fragaria x ananassa
FAN27G1521 Fragaria x ananassa
FAN27G3134 Fragaria x ananassa
FAN28G1206 Fragaria x ananassa
FvH4_2g02250 Fragaria vesca
FvH4_2g20650 Fragaria vesca
FvH4_4g04470 Fragaria vesca
FvH4_5g31170 Fragaria vesca
FvH4_6g01620 Fragaria vesca
Glyma.03G166800 Glycine max
Glyma.03G249800 Glycine max
Glyma.10G040100 Glycine max
Glyma.10G165500 Glycine max
Glyma.13G126600 Glycine max
Glyma.19G167900 Glycine max
Glyma.19G247400 Glycine max
Glyma.20G227500 Glycine max
Gohir.A08G191866 Gossypium hirsutum
Gohir.A11G133200 Gossypium hirsutum
Gohir.A13G103500 Gossypium hirsutum
Gohir.D08G209900 Gossypium hirsutum
Gohir.D09G059250 Gossypium hirsutum
Gohir.D11G139300 Gossypium hirsutum
Gohir.D13G106500 Gossypium hirsutum
Gorai.004G222200 Gossypium raimondii
Gorai.006G073800 Gossypium raimondii
Gorai.007G149600 Gossypium raimondii
Gorai.013G119500 Gossypium raimondii
GSVIVG01023397001 Vitis vinifera
GSVIVG01027907001 Vitis vinifera
GSVIVG01028411001 Vitis vinifera
HanXRQChr01g0028441 Helianthus annuus
HanXRQChr06g0172551 Helianthus annuus
HanXRQChr10g0280661 Helianthus annuus
HanXRQChr14g0451351 Helianthus annuus
HanXRQChr14g0451361 Helianthus annuus
HanXRQChr15g0468241 Helianthus annuus
Haze_04405 Corylus avellana
Haze_11451 Corylus avellana
Haze_24694 Corylus avellana
Hma1.2p1_0112F.1_g054660 Hydrangea macrophylla
Hma1.2p1_0273F.1_g109260 Hydrangea macrophylla
Hma1.2p1_1336F.1_g276470 Hydrangea macrophylla
Hma1.2p1_1702F.1_g298300 Hydrangea macrophylla
Hma1.2p1_3058F.1_g332170 Hydrangea macrophylla
HPP92_025830 Vanilla planifolia
Hund05480 Selenicereus undatus
Hund07183 Selenicereus undatus
Hund18281 Selenicereus undatus
Hund18282 Selenicereus undatus
Lalb_Chr02g0149031 Lupinus albus
Lalb_Chr06g0170701 Lupinus albus
Lalb_Chr20g0113661 Lupinus albus
Lj1C73G4 Lonicera japonica
Lj1g0018773 Lotus japonicus
Lj2A44T78 Lonicera japonica
Lj2C1143T10 Lonicera japonica
Lj3A649G56 Lonicera japonica
Lj3A649T61 Lonicera japonica
Lj5g0022094 Lotus japonicus
Lj5g0023081 Lotus japonicus
Lsat_1_v5_gn_2_10360 Lactuca sativa
Lsat_1_v5_gn_2_94520 Lactuca sativa
Lsat_1_v5_gn_8_92080 Lactuca sativa
Lsat_1_v5_gn_9_11421 Lactuca sativa
Manes.08G140400 Manihot esculenta
Manes.12G036100 Manihot esculenta
Manes.13G040300 Manihot esculenta
Mapoly0004s0038 Marchantia polymorpha
MBI07_g12936_MAGBIO Magnolia biondii
MBI10_g30715_MAGBIO Magnolia biondii
MD00G1060700 Malus domestica
MD02G1265700 Malus domestica
MD04G1231900 Malus domestica
MD12G1043600 Malus domestica
MD12G1250000 Malus domestica
Medtr1g064770 Medicago truncatula
Medtr1g069570 Medicago truncatula
Medtr1g080340 Medicago truncatula
Medtr7g098390 Medicago truncatula
Medtr8g106570 Medicago truncatula
MELO3C008647.2 Cucumis melo
MELO3C022387.2 Cucumis melo
Migut.D00470 Erythranthe guttata
Migut.F02037 Erythranthe guttata
Migut.G00477 Erythranthe guttata
Migut.N02227 Erythranthe guttata
Migut.O00088 Erythranthe guttata
MSTRG.12519 Avicennia marina
MSTRG.18349 Avicennia marina
MSTRG.9864 Avicennia marina
Nitab4.5_0000194g0300 Nicotiana tabacum
Nitab4.5_0000326g0290 Nicotiana tabacum
Nitab4.5_0000845g0130 Nicotiana tabacum
Nitab4.5_0002538g0040 Nicotiana tabacum
Nitab4.5_0002751g0030 Nicotiana tabacum
Nitab4.5_0003167g0090 Nicotiana tabacum
Nitab4.5_0003342g0010 Nicotiana tabacum
Nitab4.5_0003342g0030 Nicotiana tabacum
Nitab4.5_0009671g0030 Nicotiana tabacum
Nn1g02947 Nelumbo nucifera
Nn3g19763 Nelumbo nucifera
Oeu001253.1 Olea europaea
Oeu001254.1 Olea europaea
Oeu002294.1 Olea europaea
Oeu028901.1 Olea europaea
Oeu039654.1 Olea europaea
Oeu052077.3 Olea europaea
Os02g0496700 Oryza sativa ssp. japonica
Os02g0621100 Oryza sativa ssp. japonica
Os04g0692900 Oryza sativa ssp. japonica
Peaxi162Scf00033g03023 Petunia axillaris
Peaxi162Scf00043g02919 Petunia axillaris
Peaxi162Scf00043g02925 Petunia axillaris
Peaxi162Scf00517g00031 Petunia axillaris
Peaxi162Scf01157g00110 Petunia axillaris
PGR004G1360 Punica granatum
PGR004G2531 Punica granatum
PGR044G1458 Punica granatum
PGSC0003DMG400014693 Solanum tuberosum
PGSC0003DMG400017150 Solanum tuberosum
PGSC0003DMG400020151 Solanum tuberosum
Phvul.001G164300 Phaseolus vulgaris
Phvul.006G104500 Phaseolus vulgaris
Phvul.007G189700 Phaseolus vulgaris
Potri.002G257400 Populus trichocarpa
Potri.009G138600 Populus trichocarpa
Potri.013G048100 Populus trichocarpa
Potri.014G192500 Populus trichocarpa
Pp3c3_14470 Physcomitrium patens
Pp3c3_17380 Physcomitrium patens
Prupe.1G047100 Prunus persica
Prupe.2G058800 Prunus persica
Prupe.6G351300 Prunus persica
Prupe.8G216300 Prunus persica
Psat0s2171g0120 Pisum sativum
Psat2g081960 Pisum sativum
Psat3g055160 Pisum sativum
Psat6g062880 Pisum sativum
Psat6g143800 Pisum sativum
PSO017G3969 Papaver somniferum
PSO017G6872 Papaver somniferum
PSO063G6429 Papaver somniferum
PSO151G0231 Papaver somniferum
PSO339G2780 Papaver somniferum
PSO339G3977 Papaver somniferum
PSO356G0053 Papaver somniferum
PSO675G3487 Papaver somniferum
PSO801G0367 Papaver somniferum
PSO832G2412 Papaver somniferum
QL03p029707 Quercus lobata
QL06p020826 Quercus lobata
QL06p020848 Quercus lobata
RcHm_v2.0_Chr3g0449441 Rosa chinensis
RcHm_v2.0_Chr4g0395181 Rosa chinensis
RcHm_v2.0_Chr6g0245941 Rosa chinensis
RcHm_v2.0_Chr6g0286831 Rosa chinensis
RcHm_v2.0_Chr7g0228041 Rosa chinensis
Rhsim01G0261000 Rhododendron simsii
Rhsim05G0171700 Rhododendron simsii
Rhsim13G0039700 Rhododendron simsii
Sabra02G0195800 Salix brachista
Sabra09G0107300 Salix brachista
Sabra13G0044100 Salix brachista
SalBow4G2105 Salvia bowleyana
Sc06g0006720 Simmondsia chinensis
Sc17g0002720 Simmondsia chinensis
Sed0000832 Sechium edule
Sed0005606 Sechium edule
Sed0009313 Sechium edule
Sed0009375 Sechium edule
SEGI_36355 Sequoiadendron giganteum
SEGI_37824 Sequoiadendron giganteum
SEGI_38958 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00645 Striga asiatica
SGA_v2.0_scaffold62G21458 Striga asiatica
SGA_v2.0_scaffold67G22698 Striga asiatica
SGA_v2.0_scaffold92G28291 Striga asiatica
SHI26765 Sapria himalayana
SHI26767 Sapria himalayana
SMO347G0523 Selaginella moellendorffii
Solyc06g008130.4 Solanum lycopersicum
Solyc06g083760.3 Solanum lycopersicum
Solyc09g072890.2 Solanum lycopersicum
Solyc09g090630.3 Solanum lycopersicum
Sopen06g002990 Solanum pennellii
Sopen06g035170 Solanum pennellii
Sopen09g028690 Solanum pennellii
Sopen09g028710 Solanum pennellii
Sopen09g033570 Solanum pennellii
Sp2g08820 Schrenkiella parvula
Sp3g03280 Schrenkiella parvula
TAR365G0137 Trochodendron aralioides
TAR633G0279 Trochodendron aralioides
TAR633G0794 Trochodendron aralioides
TAR633G1057 Trochodendron aralioides
TAR633G1757 Trochodendron aralioides
THA.LOC104801129 Tarenaya hassleriana
THA.LOC104820765 Tarenaya hassleriana
Thecc.01G251600 Theobroma cacao
Thecc.05G268100 Theobroma cacao
Thhalv10003157m.g Eutrema salsugineum
Thhalv10007184m.g Eutrema salsugineum
Thhalv10008536m.g Eutrema salsugineum
Thhalv10020577m.g Eutrema salsugineum
TPR.G31890 Trifolium pratense
TPR.G5674 Trifolium pratense
TWI12G1257 Tripterygium wilfordii
TWI18G0707 Tripterygium wilfordii
TWI32G0065 Tripterygium wilfordii
TWI60G1581 Tripterygium wilfordii
TWI79G0715 Tripterygium wilfordii
TWI79G1576 Tripterygium wilfordii
unitig_26.g10130 Utricularia gibba
unitig_37.g12286 Utricularia gibba
unitig_60.g25730 Utricularia gibba
vmacro02707 Vaccinium macrocarpon
vmacro14800 Vaccinium macrocarpon
vmacro14801 Vaccinium macrocarpon
vmacro19985 Vaccinium macrocarpon
VMungo0540G2393 Vigna mungo
VMungo0720G3037 Vigna mungo
VMungo1383G0273 Vigna mungo
VMungo1383G1125 Vigna mungo
Zm00001eb038540 Zea mays
Zm00001eb076530 Zea mays
Zm00001eb175610 Zea mays
Zm00001eb185000 Zea mays

User provided reference genes

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